TCONS_00040879 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040879
Unique NameTCONS_00040879
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040879 ID=TCONS_00040879|Name=TCONS_00040879|organism=Clytia hemisphaerica|type=transcript|length=252bp
GTAATAATATGCCAGCATCACTTTAGAAGCCAATGCTAGGCCTTTATGTA
ACGGGACCTTGCATAGACAGGCACCAGCCAAAAAAAGAGAGAACGAATCA
TCGTCTTGGATGATGACTATTTGAGTTATCTTCGAAACAACATCAAGTTT
GGCaggattctaaaaaagaaaaattatggtGGTAGATTGAgggaatacac
gcttttttataagaatatcagggtgaaaattggccaaatcgtaagaatat
cC
Run BLAST on NCBI

transcript from alignment at sc0002611:19331..19582

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040879 ID=TCONS_00040879|Name=TCONS_00040879|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at sc0002611:19331..19582 (Clytia hemisphaerica)
Ggatattcttacgatttggccaattttcaccctgatattcttataaaaaa
gcgtgtattcccTCAATCTACCaccataatttttcttttttagaatcctG
CCAAACTTGATGTTGTTTCGAAGATAACTCAAATAGTCATCATCCAAGAC
GATGATTCGTTCTCTCTTTTTTTGGCTGGTGCCTGTCTATGCAAGGTCCC
GTTACATAAAGGCCTAGCATTGGCTTCTAAAGTGATGCTGGCATATTATT
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024945XLOC_024945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040879-exon-sc0002611-1491911889:19331..19582TCONS_00040879-exon-sc0002611-1491911889:19331..19582Clytia hemisphaericaexon
TCONS_00040879-exon-sc0002611-1510915933:19331..19582TCONS_00040879-exon-sc0002611-1510915933:19331..19582Clytia hemisphaericaexon
TCONS_00040879-exon-sc0002611-1575043694:19331..19582TCONS_00040879-exon-sc0002611-1575043694:19331..19582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002611supercontigsc0002611:19331..19582 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.782479	0	0.949539	3.31535	1.80618	1.4857	0.955029	2.68346	0	0	0	0.436944	0.98807	0	0	0	0	0	0	0	0.721369	1.06967	0	0	0	0.725743	1.01044	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top