TCONS_00040869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040869
Unique NameTCONS_00040869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040869 ID=TCONS_00040869|Name=TCONS_00040869|organism=Clytia hemisphaerica|type=transcript|length=732bp
TATCGACAAGGGTTGGTGTCAGGAAGTTTCATCACCTTATCCTGATGGTC
AAAATTGGTATATCCCCCATCATGGAGTTTACCACcccacaaaacaaaag
ataAGAGTAGTGTTTGATTGTAGCTCTTCATATAAAGGTGTTTGTATGAA
TAAAGAATTGATGCAGGGTCCTGATCTGACTAATAATCTGTTTGGTGTGC
TTGTAAGATTTCGTCAAGAGTTTGTTGCATTTACTGCAGATATTGAAGca
ttgttttttcaaatttacatcCCTGAGTCTCAACGTCggtttcatcaatt
tttgtgGTGGAGGGATGGTGATTTCTCCAAAGATCCTGTTTGCTATGAAA
TGAACACTCATCTCCAAGGTAGTACCTCTTCGCTAGTTGTAGCAATTTTG
CTCTGAAACAAACAGCTTCTGCAGGTGAAAATGAGTTTGGAATTCAGGCT
GCCAACAcactaagaaaaaatttttacgtTGATGATTTGCTGAAATCTAC
TGAGAGTGTTGAGTCTGCAAAGTTTCTTATTTCAGACGTTTCTAGTATGT
GTAATTATGGAGGTTttcatttaacaaaatttacTTCGAATTTTCCAGAG
GCGTTAGAGTCTGTTCCtccaaaagaaattaaagaGTGCAAATCTACTGA
ACGTGTGCTAGGTGTTTTGTGGTCCCTAGAAGATGATGTTTTCCAGTTCA
AAGCTCCTTCTAAAGTTTTCTCAAGATCTCGT
Run BLAST on NCBI

transcript from alignment at sc0002607:16364..17095

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040869 ID=TCONS_00040869|Name=TCONS_00040869|organism=Clytia hemisphaerica|type=transcript|length=732bp|location=Sequence derived from alignment at sc0002607:16364..17095 (Clytia hemisphaerica)
ACGAGATCTTGAGAAAACTTTAGAAGGAGCTTTGAACTGGAAAACATCAT
CTTCTAGGGACCACAAAACACCTAGCACACGTTCAGTAGATTTGCACtct
ttaatttcttttggaGGAACAGACTCTAACGCCTCTGGAAAATTCGAAgt
aaattttgttaaatgaaAACCTCCATAATTACACATACTAGAAACGTCTG
AAATAAGAAACTTTGCAGACTCAACACTCTCAGTAGATTTCAGCAAATCA
TCAacgtaaaaattttttcttagtgTGTTGGCAGCCTGAATTCCAAACTC
ATTTTCACCTGCAGAAGCTGTTTGTTTCAGAGCAAAATTGCTACAACTAG
CGAAGAGGTACTACCTTGGAGATGAGTGTTCATTTCATAGCAAACAGGAT
CTTTGGAGAAATCACCATCCCTCCACcacaaaaattgatgaaaccGACGT
TGAGACTCAGGgatgtaaatttgaaaaaacaatgCTTCAATATCTGCAGT
AAATGCAACAAACTCTTGACGAAATCTTACAAGCACACCAAACAGATTAT
TAGTCAGATCAGGACCCTGCATCAATTCTTTATTCATACAAACACCTTTA
TATGAAGAGCTACAATCAAACACTACTCTtatcttttgttttgtgggGTG
GTAAACTCCATGATGGGGGATATACCAATTTTGACCATCAGGATAAGGTG
ATGAAACTTCCTGACACCAACCCTTGTCGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024935XLOC_024935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040869-exon-sc0002607-1491911889:16364..17095TCONS_00040869-exon-sc0002607-1491911889:16364..17095Clytia hemisphaericaexon
TCONS_00040869-exon-sc0002607-1510915933:16364..17095TCONS_00040869-exon-sc0002607-1510915933:16364..17095Clytia hemisphaericaexon
TCONS_00040869-exon-sc0002607-1575043694:16364..17095TCONS_00040869-exon-sc0002607-1575043694:16364..17095Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002607supercontigsc0002607:16364..17095 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.07334	3.0811	1.39694	0.526001	0.0914794	0	0.0872127	0	0.0571633	0.432366	0.137452	0.104899	0.18046	0.234262	0	0.1466	0.0509235	0.156585	0.576881	0.577724	0.154072	0.0959728	0.777784	1.24657	0.655484	0.591944	0.0930153	0	0.527041	0.306841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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