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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040867 ID=TCONS_00040867|Name=TCONS_00040867|organism=Clytia hemisphaerica|type=transcript|length=1376bp
CTGCTCAGTGTAGAAATCGAAGAACTTGtgttgtttgtaacaaaagacaT
CCTACAACTCTTCATGGTTTGAGAATTGAGCGTAGACCACCTGCTGATGA
TTCTAAGAAAACAGATTGTGATGTTAGACCTTCGCCTCCAGTACCACGAC
CAAGGCCTGATATAGCTAAGTTTGATGATTCGAAATCAAAACCTGAAACA
AAAAGTACTAAAGGAGGTGTTAAATGTGGAGTTCTGAATAACAGTGCTAA
TAAAAATCTCAGTATGTGTGTTGTACCAGTTCTTCTTCGACATGATCATT
CAAAGTCTGATATTGTAACATATGCTCTTCTTGATACCTGTTCTCAAGCT
TGCTTTATTTCTGACGAAATTGTTTCTTTGATGTCATTGAAAACTATAAG
TACTGATTTGAGCATTAACACGATAACATCTGTCAAGTCAGAGAAGTGTC
AAGTGGCTTCTGGATTAAGAGTGAAAGGTCTTCATGCTGGTGATGGTAGT
TGGTTATCTCTGCCGAAGTGTTTTAGTAAACCTAATATCCCTGTTGATTC
CAGTGAGATTCCGACAGCTGACTCTATAAAAGAATGGCCTTATCTTAAAT
CTATTGAAAATGAGCTTCCTAATACAACGTTTTTAAAGGTTGGAATTCTG
ATTGGTGCTAATTGTTTGAAAGCTATCGAACCTTTAAAAGTTATACCAAG
TCAGGATGATGGTCCCTTTGCCTTTAAAACTAAGCTTGGTTGGTGTGTTG
TCGGACCTATCAGTTCGTCAAGGTCATCAGATGCTATTTCTTGTTGCAGA
GTCATGGTTAATGATCATGGTAGATCGAACCATCTTGTTGTTGAGGAAAC
ACAGGTTAAAGACTCTGGAATTGAAAATatgctaaaaaatatttttgata
tagAAAGTGTTCCTGAAACTAAGTTATATACTGAGTACGAATCTTTTTCT
CAAGATGATTTACACTTTCTAGAGATTGTTGAAAATCGTTCTGAATTCAT
TGATGGACACTACCATGTACCTCTGCCCTTTCGTAACGAAAATATTAGCT
TTCCAGATAATCGTCCTCTAGCTCTGAAAAGGTTGAGTTTGCtgaagaaa
aagtttgaatcttcttcaaaattttactcTGACTATGTTGCCTTTATGAA
CAACATTATCGACAAGGGTTGGTGTCAGGAAGTTTCATCACCTTATCCTG
ATGGTCAAAATTGGCACATCCCCCATCATGGAGTTTaccaaccaacaaaa
caaaatataagaGTAGTGTTTGATTGTAGCTCTTCATATAAAGGTGTTTG
TATGAATAAAGAATTGATGCAGGGTCCTGATCTGACTAATCATCTGATTG
GTGTGCTTATAAGATTTCGTCAAGAG Run BLAST on NCBI protein sequence of TCONS_00040867-protein >TCONS_00040867-protein ID=TCONS_00040867-protein|Name=TCONS_00040867-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
AQCRNRRTCVVCNKRHPTTLHGLRIERRPPADDSKKTDCDVRPSPPVPRP
RPDIAKFDDSKSKPETKSTKGGVKCGVLNNSANKNLSMCVVPVLLRHDHS
KSDIVTYALLDTCSQACFISDEIVSLMSLKTISTDLSINTITSVKSEKCQ
VASGLRVKGLHAGDGSWLSLPKCFSKPNIPVDSSEIPTADSIKEWPYLKS
IENELPNTTFLKVGILIGANCLKAIEPLKVIPSQDDGPFAFKTKLGWCVV
GPISSSRSSDAISCCRVMVNDHGRSNHLVVEETQVKDSGIENMLKNIFDI
ESVPETKLYTEYESFSQDDLHFLEIVENRSEFIDGHYHVPLPFRNENISF
PDNRPLALKRLSLLKKKFESSSKFYSDYVAFMNNIIDKGWCQEVSSPYPD
GQNWHIPHHGVYQPTKQNIRVVFDCSSSYKGVCMNKELMQGPDLTNHLIG
VLIRFRQE Run BLAST on NCBI transcript from alignment at sc0002607:4950..6325 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040867 ID=TCONS_00040867|Name=TCONS_00040867|organism=Clytia hemisphaerica|type=transcript|length=1376bp|location=Sequence derived from alignment at sc0002607:4950..6325 (Clytia hemisphaerica)
CTCTTGACGAAATCTTATAAGCACACCAATCAGATGATTAGTCAGATCAG
GACCCTGCATCAATTCTTTATTCATACAAACACCTTTATATGAAGAGCTA
CAATCAAACACTACtcttatattttgttttgttggttggtAAACTCCATG
ATGGGGGATGTGCCAATTTTGACCATCAGGATAAGGTGATGAAACTTCCT
GACACCAACCCTTGTCGATAATGTTGTTCATAAAGGCAACATAGTCAgag
taaaattttgaagaagattcaaactttttcttcaGCAAACTCAACCTTTT
CAGAGCTAGAGGACGATTATCTGGAAAGCTAATATTTTCGTTACGAAAGG
GCAGAGGTACATGGTAGTGTCCATCAATGAATTCAGAACGATTTTCAACA
ATCTCTAGAAAGTGTAAATCATCTTGAGAAAAAGATTCGTACTCAGTATA
TAACTTAGTTTCAGGAACACTTTctatatcaaaaatattttttagcatAT
TTTCAATTCCAGAGTCTTTAACCTGTGTTTCCTCAACAACAAGATGGTTC
GATCTACCATGATCATTAACCATGACTCTGCAACAAGAAATAGCATCTGA
TGACCTTGACGAACTGATAGGTCCGACAACACACCAACCAAGCTTAGTTT
TAAAGGCAAAGGGACCATCATCCTGACTTGGTATAACTTTTAAAGGTTCG
ATAGCTTTCAAACAATTAGCACCAATCAGAATTCCAACCTTTAAAAACGT
TGTATTAGGAAGCTCATTTTCAATAGATTTAAGATAAGGCCATTCTTTTA
TAGAGTCAGCTGTCGGAATCTCACTGGAATCAACAGGGATATTAGGTTTA
CTAAAACACTTCGGCAGAGATAACCAACTACCATCACCAGCATGAAGACC
TTTCACTCTTAATCCAGAAGCCACTTGACACTTCTCTGACTTGACAGATG
TTATCGTGTTAATGCTCAAATCAGTACTTATAGTTTTCAATGACATCAAA
GAAACAATTTCGTCAGAAATAAAGCAAGCTTGAGAACAGGTATCAAGAAG
AGCATATGTTACAATATCAGACTTTGAATGATCATGTCGAAGAAGAACTG
GTACAACACACATACTGAGATTTTTATTAGCACTGTTATTCAGAACTCCA
CATTTAACACCTCCTTTAGTACTTTTTGTTTCAGGTTTTGATTTCGAATC
ATCAAACTTAGCTATATCAGGCCTTGGTCGTGGTACTGGAGGCGAAGGTC
TAACATCACAATCTGTTTTCTTAGAATCATCAGCAGGTGGTCTACGCTCA
ATTCTCAAACCATGAAGAGTTGTAGGAtgtcttttgttacaaacaacaCA
AGTTCTTCGATTTCTACACTGAGCAG Coding sequence (CDS) from alignment at sc0002607:4950..6325 >TCONS_00040867 ID=TCONS_00040867|Name=TCONS_00040867|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at sc0002607:4950..6325 (Clytia hemisphaerica)
CTCTTGACGAAATCTTATAAGCACACCAATCAGATGATTAGTCAGATCAG
GACCCTGCATCAATTCTTTATTCATACAAACACCTTTATATGAAGAGCTA
CAATCAAACACTACtcttatattttgttttgttggttggtAAACTCCATG
ATGGGGGATGTGCCAATTTTGACCATCAGGATAAGGTGATGAAACTTCCT
GACACCAACCCTTGTCGATAATGTTGTTCATAAAGGCAACATAGTCAgag
taaaattttgaagaagattcaaactttttcttcaGCAAACTCAACCTTTT
CAGAGCTAGAGGACGATTATCTGGAAAGCTAATATTTTCGTTACGAAAGG
GCAGAGGTACATGGTAGTGTCCATCAATGAATTCAGAACGATTTTCAACA
ATCTCTAGAAAGTGTAAATCATCTTGAGAAAAAGATTCGTACTCAGTATA
TAACTTAGTTTCAGGAACACTTTctatatcaaaaatattttttagcatAT
TTTCAATTCCAGAGTCTTTAACCTGTGTTTCCTCAACAACAAGATGGTTC
GATCTACCATGATCATTAACCATGACTCTGCAACAAGAAATAGCATCTGA
TGACCTTGACGAACTGATAGGTCCGACAACACACCAACCAAGCTTAGTTT
TAAAGGCAAAGGGACCATCATCCTGACTTGGTATAACTTTTAAAGGTTCG
ATAGCTTTCAAACAATTAGCACCAATCAGAATTCCAACCTTTAAAAACGT
TGTATTAGGAAGCTCATTTTCAATAGATTTAAGATAAGGCCATTCTTTTA
TAGAGTCAGCTGTCGGAATCTCACTGGAATCAACAGGGATATTAGGTTTA
CTAAAACACTTCGGCAGAGATAACCAACTACCATCACCAGCATGAAGACC
TTTCACTCTTAATCCAGAAGCCACTTGACACTTCTCTGACTTGACAGATG
TTATCGTGTTAATGCTCAAATCAGTACTTATAGTTTTCAATGACATCAAA
GAAACAATTTCGTCAGAAATAAAGCAAGCTTGAGAACAGGTATCAAGAAG
AGCATATGTTACAATATCAGACTTTGAATGATCATGTCGAAGAAGAACTG
GTACAACACACATACTGAGATTTTTATTAGCACTGTTATTCAGAACTCCA
CATTTAACACCTCCTTTAGTACTTTTTGTTTCAGGTTTTGATTTCGAATC
ATCAAACTTAGCTATATCAGGCCTTGGTCGTGGTACTGGAGGCGAAGGTC
TAACATCACAATCTGTTTTCTTAGAATCATCAGCAGGTGGTCTACGCTCA
ATTCTCAAACCATGAAGAGTTGTAGGAtgtcttttgttacaaacaacaCA
AGTTCTTCGATTTCTACACTGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040867-exon-sc0002607-1491911889:4950..6325 | TCONS_00040867-exon-sc0002607-1491911889:4950..6325 | Clytia hemisphaerica | exon |
| TCONS_00040867-exon-sc0002607-1510915933:4950..6325 | TCONS_00040867-exon-sc0002607-1510915933:4950..6325 | Clytia hemisphaerica | exon |
| TCONS_00040867-exon-sc0002607-1575043694:4950..6325 | TCONS_00040867-exon-sc0002607-1575043694:4950..6325 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002607 | supercontig | sc0002607:4950..6325 . |
Blast
The following BLAST results are available for this feature:
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