TCONS_00040860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040860
Unique NameTCONS_00040860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1038

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040860 ID=TCONS_00040860|Name=TCONS_00040860|organism=Clytia hemisphaerica|type=transcript|length=1038bp
CATTTGCAGTTTAGTGAAACGGAGCAGTAGCAGTGGGATGAAACCTCAAG
CAAAAGTGTATAATATTCCTGATGGCACAACAGAGGACGAAATCACTGCC
TTGTTTGGAAATGTTGGAATCTGTACAGGTTGCAAGATTTTGCCTTGTAG
GGAAGGAAAAGATGTCACCCTTggCTTTGTCCATTTTCAATCAGAGGAAG
AGGTTGATAAAGCAGCTCAGATGTACCATGATTATGATTTCAAAGGTTCA
CGTCTCAGAGTTGAAGGTTCTGGTGGCTCTTTTCCCTCTAGaCAATCTGA
TTCTTCACAATCTCGACCTATGGGAAGAGGAGCACAACTTCTTGCAAATG
TCAACGCGATGAacggaggtggtggaggtgatTTTCCACAAAGAAGAGAA
AGAGGTCCTCAAGCGAAAGTGTTTGGAATACCAGAAGGGACCTCTCAGga
tgagttgaaagattttttctctcCTGCTGGAAACGTCACGAATACAAAGG
TTTTACCTCTACGTGAAGGAAAAGATACACATCTGGGgTTCATTGAGTTT
TCCAACGATAGTGAAGTGCAAGCTGCTGTTGACCAGTTCGATGGACAAga
tttcaaagggtctaatctgAAAGTTATGGTTGGTCAAACTAGCGGTGGCA
GCGGTGGAGGTTCAAGTTTTCAAAATAGCAGCTGGAATAGCAGTTCAATT
GCACCTACGAGTAGAATCCCTAGATTCGGCGACAGATCgaATGGTGGTGG
TGGTATGGACGGTGGTATTCAATTAGATGCAAATTTCGACATGAATGGTG
GCATGATGGGAGATGACATGATGATGAACCGCCCTCCACCCGTCAACTAC
ATCCCTCCTCCACCTCCCGAAACTGAagatgaaatctttcagcttgGGAT
AAATGagggaataaattttgaaaagtatttCAACATTCCTGTTGAAATTA
CAGGAGCAAATGCGCCGAAACCAGTCAATAACTTTGCTGAGGCCCAACTC
AACCATGTAAGACAACTTTTCCAAGAAATATTCCCAAG
Run BLAST on NCBI

transcript from alignment at sc0002604:14459..19734+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040860 ID=TCONS_00040860|Name=TCONS_00040860|organism=Clytia hemisphaerica|type=transcript|length=5276bp|location=Sequence derived from alignment at sc0002604:14459..19734+ (Clytia hemisphaerica)
CATTTGCAGTTTAGTGAAACGGTTCGAGTTTGTTGGTTTTTAACATCAAA
AGATATGTAACCTAGGCCAACGACTTAATAAAATAGATGGACCAAGAACT
TCATACAGTGGCTCTtagaaatcttttgttttctattcattttgtattct
ttcatctTGCCGTCTTTCCCCCGTCCGCGTAAGtcatattacaaagaaat
tagaatttttacaagcatctctaaatggtgtaaaatcaattatatcaaat
ttctactgaccataaacataattttcgattttttttgctaacATCAGATC
GCATCTTTAATGATCTTTctcacaagatatttttcaatatttttcgacaA
CACTGTTGCCTTTTTCAGcgcattttctttaagaacataaaaaattttga
aagactcTAACTAAGAAAATAAACGTGCGTTCATTGTGCGTTCTTAAGAT
AGAAAACACAAACACTATCCAAatacaaatgttataattttaacaatgtt
tactagtttttaagcctaaaagtttgacttgaaattaagaacatattcac
aaaatttaggtcatgtgatcaatatcaaccaatagctaatcttaaaaaaa
tgcttttgcacgcggaatgacattttaatgatgcaaaaaatcattaaatt
ttttatcattcttacgCGGATCCTTTCAATAGGATACTGGTCTATCTATT
TTTTTAGGTCGTTGCCTAGGCCTAGCTCAAAGTCCTTTATAAATTCTAGA
AATTTTGACAATGTTCCTCAAAATTGGGCAGAAAATGAGTCCTCTAAGAC
AATGAAATCTtggtttttggaaattttctggGGATAGCGCAAACCTTCAT
CAAAATCTTTATCTCCTGATCTACCCTTTAAAGATCAAGTCTGTCGAAAT
ATGCTTTCAAGCTCTCGAATCTTCAAAGATGAACTTTACCAACCTTTAAA
AACAATTTAGCTAATCAGACTGTTTGCCCTTAAAGTTTGCAGTTAAATGA
GCCCTAAAgctcaaatttttcaaagagaaGGCAAGGTTTAGAAATATTCT
ATACTTTTGGACTCATCTTTGAGTATTTAAAGGGTAGACGGGTTGACAGC
AAAATTGTCTTGAGAAGTTAGTAAAGTTCATcatttgtagtgtttttgtg
acgtcataactcaagctaccattttgaaaattttgattttttttgaaaat
tatttacttTACTAGCCACAGTTTCAGAATCACCAAAAACCGATTCCTCA
TTTCgatttgagaaagcatggttctatatcaaaTCTTTTTAAGTGCAGTT
cccaaaattgtcaaaaacttcaaattgacATAAATCCTTCATTATGGGTT
TTCAGACataaatattttgggattttactcagttcattgcATTGTACtta
aaaacatatcaaaaatgaaaaaagtttcaaactattggacctgcCCAAAA
CTGCCTCATTCTtgaaaaactggctcttaactATTAAGAAGTTTCTTTAT
CGTCAATTTTTATATTGTCTCATCTTTTTCTAACAGGAGCAGTAGCAGTG
GGATGAAACCTCAAGCAAAAGTGTATAATATTCCTGATGGCACAACAGAG
GTAActtttttcttcctctttttaTTCATCACTTAGTTATTGGCATTTTT
TAGTTGACAATCAAGGCTGTTGGGCTTAATTATTTGTGTATTTTAGTAAC
TGAATGTTTATTCCTTGTCAAATAATGTGACTCTGACTCTTTTTGCTATA
CTGTTGGTGAGAGAGCCAAATGCACCTACACCCCCCTCCTCATCACATTA
TAAAATATCAATTATTCTTTGTCNCAAATGCACCTACACACCCCTCCTCA
TCACATTATAAAATATCAATTATTCTTTGTCttcttttgtgaaaaagaga
atTCCCAAAAGTCACTATATGTAAAATAAGTGCAGGTTTAGGGTATggta
aatcaataaaaaatagtCTAAAGTAGAGCACTTGTGCGACATTCAAAGTA
GAGGACTTGTGAGACAGAAAATTTCTTGAACTTAGCTGAATAATACTCAC
AACGCTGAATGAACTTTGCAAAATGagcttttaatgttttttatttatca
gGACGAAATCACTGCCTTGTTTGGAAATGTTGGAATCTGTACAGGTTGCA
AGATTTTGCCTTGTAGGGAAGGAAAAGATGTCACCCTTgggtaaatattt
cttttgaagTTGCAAGtacattatttttattttacttcagcagttttgaa
tttaaattcaAATAGATTGTTTCGACAAATTTTCAActaatttttatata
tttttttgagatTGACTTTGTAACAACAATGTGTATTATTTTAGGTGCAT
ACCATTtagccaaaaaaaaacaaaaaagtgaaacagaggGTTTAGCGAGC
GTATTGATTCATCTAAAAGTTTACCTAAACAGACGATCAAAGCCAACGGt
ctttttttctgtgttttcttcGTTCGCTAAACCAAGGGTTTAGCCAACAG
TCAGcaccatttgattttttgttttgctaaacCATTATTCTGACCAAGCA
CAACACCTCCTTTACGCTGGTTCACCAAGCGCACGCATGCATATGCCCTA
AgctttaataattttttcagCTAGGTTACTATTTTGAAATTCGTTGCTGT
GACTTCAGgcctttaaattcaaaatagtAGCGTGAGAAGTGTAAGATCTT
AGAAATCGAATTAGCAATGCAATAGATTCTTTGTTtaggtaaacaaaccc
aaaccattAGTGAAACAGTTTTgcttttttggttttgaacattaaaaggt
atacaacctttatttttttccattttgcaatatattttgaaGTTATGATC
ATCCTCaggctgaaaacaaaagtaactagccgtattgtataagggttgcg
aagcgatccagactctacctcaattcgcaagttgctagcaaaataatagc
gagcacctcactactaaaaaccgggatttttcatctcgtttcttagtgag
ttccactttgacgatttttgaaaaatagaagcctttcaagtgttttgacg
caaattcgattatttNNtgcgggtgacgtctagtataggctagcaaaata
agagacactctaaaaatccctctaataaagccgctataagagcagagaca
gggtcgtaagagcgttgaaatttaagaacatacaaacattgataaaaaag
ttctaAATATCTTCTTTTAGCTTTGTCCATTTTCAATCAGAGGAAGAGGT
TGATAAAGCAGCTCAGATGTACCATGATTATGATTTCAAAGGTTCACGTC
TCAGAGTTGAAGGTTCTGGTGGCTCTTTTCCCTCTAGGTAATTTAtgcca
aaaattttctttctttattaatAAGGACATATATCCTCAGCCTGGGTTTA
CCTTAAGTGTATATTTTCGCATGCACTTAATTTTgcaagtttttcaaaaa
cacaaaaatcttaaaataaatacactggaaaactttcaaaataggCCAAG
ATAGCGAAATTTTTGCAagtagaaaagaaaaatgaattttttttaaaggc
aTCAGTGATGGTTTGTTACAATATTGATAGTATTTTTGCATCTGATATGT
TAagattcatgaaatttttggtAACCTCTAGTGTTTCGACCCTCAACACT
TGTAAAAGTTTGTTCCAATGTGCTGCTGCTTGAAGGTtaatataaaatat
tttgtacATTGTGCATTGTACATTGTTCccccaaatatttgaaacatctt
TAGTCCCCACCTTTTTTGGGCTTTTTGGAGGGTGTAACCCCCAACTAGCA
AGAGGGCTGACACTATGAAGGAAGAAGGAAAGCACAATGTCAACAAGAAa
tggttattttttcttcagaCAATCTGATTCTTCACAATCTCGACCTATGG
GAAGAGGAGCACAACTTCTTGCAAATGTCAACGCGATGAacggaggtggt
ggaggtgatTTTCCACAAAGAAGAGAAAGAGGTCCTCAAGCGAAAGTGTT
TGGAATACCAGAAGGGACCTCTCAGGTATCTTTTAAGTCTTTCTCAGTTA
TAagttttaaaaagatttaaatCAAGCTTTTCAATAATGTACAAAGACAT
GTTCATGGCATACTTGCCGTAATAACCTTTCTTAGATGCTTAGgataaaa
aacaatcgaaaCCCTTTTTTAATAGAAACCCTgactatttttcaattttt
aggatgagttgaaagattttttctctcCTGCTGGAAACGTCACGAATACA
AAGGTTTTACCTCTACGTGAAGGAAAAGATACACATCTGGGGTAAGCTCA
TTTCTCTCAAATCTTAGAACTTAGATGTTTTTTATAGTACTTTATCAAAA
GGCAGCAAGAAAAAAGAAAGCTCACAACTAGTTTTATTTAacgctttttt
tctaaaaacaggTTCATTGAGTTTTCCAACGATAGTGAAGTGCAAGCTGC
TGTTGACCAGTTCGATGGACAAgatttcaaagggtctaatctgAAAGTTA
TGGTTGGTCAAACTAGCGGTGGCAGCGGTGGAGGTTCAAGTTTTCAAAAT
AGCAGCTGGAATAGCAGTTCAATTGCACCTACGAGTAGAATCCCTAGATT
CGGCGACAGATCGTAAGTCTTGTTTTTTCCCTCCTCTCTTTCAAGATAAT
TCTTTCAGATGTTGACATACAAGCTTTATGAACAAGCATTGTAACATCtt
gtcttttcaatttttttaggaATGGTGGTGGTGGTATGGACGGTGGTATT
CAATTAGATGCAAATTTCGACATGAATGGTAAGGAAAACCTATCAGCTAC
CaaagaaacaaacaaacttttccTACTTCAAAATGCACTAATATCTAACA
CTTGCGTAGCACTCTGGACAATCTctatttttaccaattttcaaaTACTC
GCCAGAAGCTCTTTCTTGTGGAACCAAAATAATCACTTTGTATGGCTGGA
TAAGCGATTTTTGATTCTCgattttatttgataaaattcatCGGCCTAAA
TCATTAAAGCATAATTTTAATCTGCTCCCAAACAGGTGGCATGATGGGAG
ATGACATGATGATGAACCGCCCTCCACCCGTCAACTACATCCCTCCTCCA
CCTCCCGAAACTGAagatgaaatctttcagcttgGGATAAATGagggaat
aaattttgaaaagtatttCAACATTCCTGTTGAAATTACAGGAGCAAATG
CGCCGAAACCAGTCAATAACTTTGCTGAGGCCCAACTCAACCATGTAAGA
CAACTTTTCCAAGAAATATTCCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024927XLOC_024927Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040860-exon-sc0002604-1491911889:14459..14479TCONS_00040860-exon-sc0002604-1491911889:14459..14479Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1510915933:14459..14479TCONS_00040860-exon-sc0002604-1510915933:14459..14479Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1575043694:14459..14479TCONS_00040860-exon-sc0002604-1575043694:14459..14479Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1491911889:15995..16058TCONS_00040860-exon-sc0002604-1491911889:15995..16058Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1510915933:15995..16058TCONS_00040860-exon-sc0002604-1510915933:15995..16058Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1575043694:15995..16058TCONS_00040860-exon-sc0002604-1575043694:15995..16058Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1491911889:16560..16648TCONS_00040860-exon-sc0002604-1491911889:16560..16648Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1510915933:16560..16648TCONS_00040860-exon-sc0002604-1510915933:16560..16648Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1575043694:16560..16648TCONS_00040860-exon-sc0002604-1575043694:16560..16648Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1491911889:17679..17795TCONS_00040860-exon-sc0002604-1491911889:17679..17795Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1510915933:17679..17795TCONS_00040860-exon-sc0002604-1510915933:17679..17795Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1575043694:17679..17795TCONS_00040860-exon-sc0002604-1575043694:17679..17795Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1491911889:18327..18483TCONS_00040860-exon-sc0002604-1491911889:18327..18483Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1510915933:18327..18483TCONS_00040860-exon-sc0002604-1510915933:18327..18483Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1575043694:18327..18483TCONS_00040860-exon-sc0002604-1575043694:18327..18483Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1491911889:18661..18749TCONS_00040860-exon-sc0002604-1491911889:18661..18749Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1510915933:18661..18749TCONS_00040860-exon-sc0002604-1510915933:18661..18749Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1575043694:18661..18749TCONS_00040860-exon-sc0002604-1575043694:18661..18749Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1491911889:18870..19070TCONS_00040860-exon-sc0002604-1491911889:18870..19070Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1510915933:18870..19070TCONS_00040860-exon-sc0002604-1510915933:18870..19070Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1575043694:18870..19070TCONS_00040860-exon-sc0002604-1575043694:18870..19070Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1491911889:19178..19236TCONS_00040860-exon-sc0002604-1491911889:19178..19236Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1510915933:19178..19236TCONS_00040860-exon-sc0002604-1510915933:19178..19236Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1575043694:19178..19236TCONS_00040860-exon-sc0002604-1575043694:19178..19236Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1491911889:19494..19734TCONS_00040860-exon-sc0002604-1491911889:19494..19734Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1510915933:19494..19734TCONS_00040860-exon-sc0002604-1510915933:19494..19734Clytia hemisphaericaexon
TCONS_00040860-exon-sc0002604-1575043694:19494..19734TCONS_00040860-exon-sc0002604-1575043694:19494..19734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002604supercontigsc0002604:14459..19734 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.08826	6.29293	5.00414	3.71288	38.037	25.503	30.3349	23.6328	24.7254	30.2362	22.485	20.3724	21.6007	27.9922	17.1081	20.6375	20.3421	12.1584	5.2202	7.2311	25.4432	23.2704	20.123	16.5353	23.5171	17.974	3.46642	6.7759	11.6667	11.1741
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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