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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040849 ID=TCONS_00040849|Name=TCONS_00040849|organism=Clytia hemisphaerica|type=transcript|length=1015bp
aaatttttaagataaaataaaaacataattgGCATATACAGACAATCAAC
ATTTTTCTAACTGTCTAAATGGAGACATCTGAGAAACATCTTTCCAAGTT
GAATGAAATATGTCGAACCTGTGGTAACAAGATTGTAATCAAGCGTTATA
AGTCCTATAATCCAAAATTGGCATCAGTATATGAAAGGACAATTCAGGAA
CTTTTCGGTTATACCTTAAAAGATGATGTCACAGGTATCCATCCACCCAA
ATTATGTGACACCTGTCGTAAGAAATTAGATGATGCCAATAAGTCAACGC
ATACCACTTCAGATGTTCTACCAGTTTTTCAACCTCACTCTGACACTAGT
TGCAATATTTGTAGTTTACCAAAAGTGAGAAGTAAAGGATTTAGAATTAT
AAAAGAATCGAAAACGACTAGTGAAAGTTCTCCTGAtcaaaagaatcaaa
atttgAGATCTCCATTTTCATTAACTGAAGCTGCCAATCAATGTAATTTA
ATGGATCTGAGCAAGTTTGGAGATCCAACTTACACATTTGCATTTATTGA
TAAAGGTTTTGTGATGGGGTTCAGATTTGAAATTGAGATTGATGGCAAGT
GGAGATTGTACCATGGGANATTGATAAAGGTTTCGTGATGGGGTTCAGAT
TTGAAATCGAGATTGATGGCAAGTGGAGATTGTACCATGGGAAAAACTTG
ATTGAAAGAAATAATAAAGTTTTGCAATTTCTACCTGATGTAATCAATGT
GGAAAATgctttgtatatttttgaaacaataagTACATCCGAACTTTGTC
CTGGAAATGAGgactttaaaaaacttattgatgagaaaataaattctaaa
taatgttCATTCAAGGATAAAGAAAACAATATAAAAGCTACCATCGAAAA
TGCAACATTATCAGGTGTGGAAGACCTCAAAACTATTCGAGTTAAAGATT
GTGAGTTGTTGGTGAGAAATGATGTTAGTAGATGCGAACCATGTATCAAA
TACCGTCACTATTTG Run BLAST on NCBI protein sequence of TCONS_00040849-protein >TCONS_00040849-protein ID=TCONS_00040849-protein|Name=TCONS_00040849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
METSEKHLSKLNEICRTCGNKIVIKRYKSYNPKLASVYERTIQELFGYTL
KDDVTGIHPPKLCDTCRKKLDDANKSTHTTSDVLPVFQPHSDTSCNICSL
PKVRSKGFRIIKESKTTSESSPDQKNQNLRSPFSLTEAANQCNLMDLSKF
GDPTYTFAFIDKGFVMGFRFEIEIDGKWRLYHGXLIKVS Run BLAST on NCBI transcript from alignment at sc0002594:18094..20582+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040849 ID=TCONS_00040849|Name=TCONS_00040849|organism=Clytia hemisphaerica|type=transcript|length=2489bp|location=Sequence derived from alignment at sc0002594:18094..20582+ (Clytia hemisphaerica)
aaatttttaagataaaataaaaacataattgGCATATATATACAGAcaaa
caacatttttataaCTGTCTAAATGGAGACATCTGAGTAAGTATGAACTT
CAGTTTCATTTAatacattttcgtgattttaacATTTCTGttggcaaaat
ttgaaattgtttcACATTCACACGTATATATGGGCATATACATGTTCTGA
GAAAGTTTTACTCTTAAAGATTTTGTTAACTAATCAATCTAGGTTAAATA
ATGCAAATGCAAAATAATGCAAAGCCTAACCTAACCCATAATGGAAAATA
TGTTATTATGGACAAATGACTTTGTCAGGGTTAGCTCTTTTAATTTGTAA
AGACTTGAAATCCAAGTTTGTTctatatttttcttaaaatatattaaaat
caataaaattttgtttcattCAGGAAACATCTTTCCAAGTTGAATGAAAT
ATGTCGAACCTGTGGTAACAAGATTGTAATCAAGCGTTTTAAGTCCTATA
ATCCAAAATTGGCATCAACATATGAAAGGACGATTCAAGAACTTTTCGGT
TATACCTTAAAAGATGATGTCACAGGTATCCATCCACCCAAATTATGTGA
CACCTGTCGTAAGAAATTAGATGATGCCAATAAGGCAACGCATACCACTT
CAGATGTTCTACCAGTTTTTCAACCTCACTCTGACACTAGTTGCAATATT
TGTAATTTACCAAAAGTGAGAAATAAAGGATTTAGAATTATAAAAGAATC
GAAAACGACTAGTGAAAGTTCTCCTGATCAAAGGAATCAAAATTCAAGAT
CTCCATTTTCATTAACTGAAGCTGCCAATCAATGTAATTTAATGGATCTG
AGCAAGTTTGGAGATCCAACTTACACATTTGCATTTATTGATAAAGGTTT
TGTGATGGGGTTCAGATTTGAAATTGAGATTGATGGCAAGTGGAGATTGT
ACCATGGGAAAAACTTGATTGAAAGAAATAATAAAGTTTTGCAATTTCTA
CCTGATGTAATCAATGTGGAAAATgctttgtatatttttgaaacaataNT
ATATATGCATAAAATTTTGTTAGTCCTAAATAATAAGATCAATATGTGTT
TGGAGTGTACACCATTGACTATTTTTTATCCTAGaaatttttaagataaa
ataaaaacataattgGCATATACAGACAATCAACATTTTTCTAACTGTCT
AAATGGAGACATCTGAGTAAGTATGAACTTCAGTTtcattttaatatatt
ttcatgattttaacATCTTCTGttggcaaaatttgaaattgtttcACATT
CACACGTATATGGACACATATCTGCATATGTTCTGAGTAAGTTTTACGGT
ACTCTTAAAGATTTTGTTAACTAATCAATCTAGGTTAAATAATGCAAATG
ACTTAACTTAACCTACCCATAATGGAAAATATGTTATTATGGACAAATGG
CTTTGTCAGGGTTAGCTCTTTTAATTTGTAAAGACTTGAAATCCAAGTTT
GTTctatatttttcttaaaatatattaaaatcaataaaattttgtttcat
tCACAGGAAACATCTTTCCAAGTTGAATGAAATATGTCGAACCTGTGGTA
ACAAGATTGTAATCAAGCGTTATAAGTCCTATAATCCAAAATTGGCATCA
GTATATGAAAGGACAATTCAGGAACTTTTCGGTTATACCTTAAAAGATGA
TGTCACAGGTATCCATCCACCCAAATTATGTGACACCTGTCGTAAGAAAT
TAGATGATGCCAATAAGTCAACGCATACCACTTCAGATGTTCTACCAGTT
TTTCAACCTCACTCTGACACTAGTTGCAATATTTGTAGTTTACCAAAAGT
GAGAAGTAAAGGATTTAGAATTATAAAAGAATCGAAAACGACTAGTGAAA
GTTCTCCTGAtcaaaagaatcaaaatttgAGATCTCCATTTTCATTAACT
GAAGCTGCCAATCAATGTAATTTAATGGATCTGAGCAAGTTTGGAGATCC
AACTTACACATTTGCATTTATTGATAAAGGTTTTGTGATGGGGTTCAGAT
TTGAAATTGAGATTGATGGCAAGTGGAGATTGTACCATGGGANATTGATA
AAGGTTTCGTGATGGGGTTCAGATTTGAAATCGAGATTGATGGCAAGTGG
AGATTGTACCATGGGAAAAACTTGATTGAAAGAAATAATAAAGTTTTGCA
ATTTCTACCTGATGTAATCAATGTGGAAAATgctttgtatatttttgaaa
caataagTACATCCGAACTTTGTCCTGGAAATGAGgactttaaaaaactt
attgatgagaaaataaattctaaataatgttCATTCAAGGATAAAGAAAA
CAATATAAAAGCTACCATCGAAAATGCAACATTATCAGGTGTGGAAGACC
TCAAAACTATTCGAGTTAAAGATTGTGAGTTGTTGGTGAGAAATGATGTT
AGTAGATGCGAACCATGTATCAAATACCGTCACTATTTG Coding sequence (CDS) from alignment at sc0002594:18094..20582+ >TCONS_00040849 ID=TCONS_00040849|Name=TCONS_00040849|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at sc0002594:18094..20582+ (Clytia hemisphaerica)
ATGGAGACATCTGAGAAACATCTTTCCAAGTTGAATGAAATATGTCGAAC
CTGTGGTAACAAGATTGTAATCAAGCGTTATAAGTCCTATAATCCAAAAT
TGGCATCAGTATATGAAAGGACAATTCAGGAACTTTTCGGTTATACCTTA
AAAGATGATGTCACAGGTATCCATCCACCCAAATTATGTGACACCTGTCG
TAAGAAATTAGATGATGCCAATAAGTCAACGCATACCACTTCAGATGTTC
TACCAGTTTTTCAACCTCACTCTGACACTAGTTGCAATATTTGTAGTTTA
CCAAAAGTGAGAAGTAAAGGATTTAGAATTATAAAAGAATCGAAAACGAC
TAGTGAAAGTTCTCCTGAtcaaaagaatcaaaatttgAGATCTCCATTTT
CATTAACTGAAGCTGCCAATCAATGTAATTTAATGGATCTGAGCAAGTTT
GGAGATCCAACTTACACATTTGCATTTATTGATAAAGGTTTTGTGATGGG
GTTCAGATTTGAAATTGAGATTGATGGCAAGTGGAGATTGTACCATGGGA
NATTGATAAAGGTTTCGTGAATGGAGACATCTGAGAAACATCTTTCCAAG
TTGAATGAAATATGTCGAACCTGTGGTAACAAGATTGTAATCAAGCGTTA
TAAGTCCTATAATCCAAAATTGGCATCAGTATATGAAAGGACAATTCAGG
AACTTTTCGGTTATACCTTAAAAGATGATGTCACAGGTATCCATCCACCC
AAATTATGTGACACCTGTCGTAAGAAATTAGATGATGCCAATAAGTCAAC
GCATACCACTTCAGATGTTCTACCAGTTTTTCAACCTCACTCTGACACTA
GTTGCAATATTTGTAGTTTACCAAAAGTGAGAAGTAAAGGATTTAGAATT
ATAAAAGAATCGAAAACGACTAGTGAAAGTTCTCCTGAtcaaaagaatca
aaatttgAGATCTCCATTTTCATTAACTGAAGCTGCCAATCAATGTAATT
TAATGGATCTGAGCAAGTTTGGAGATCCAACTTACACATTTGCATTTATT
GATAAAGGTTTTGTGATGGGGTTCAGATTTGAAATTGAGATTGATGGCAA
GTGGAGATTGTACCATGGGANATTGATAAAGGTTTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040849-exon-sc0002594-1491911889:18094..18117 | TCONS_00040849-exon-sc0002594-1491911889:18094..18117 | Clytia hemisphaerica | exon |
| TCONS_00040849-exon-sc0002594-1510915933:18094..18117 | TCONS_00040849-exon-sc0002594-1510915933:18094..18117 | Clytia hemisphaerica | exon |
| TCONS_00040849-exon-sc0002594-1575043694:18094..18117 | TCONS_00040849-exon-sc0002594-1575043694:18094..18117 | Clytia hemisphaerica | exon |
| TCONS_00040849-exon-sc0002594-1491911889:19252..19309 | TCONS_00040849-exon-sc0002594-1491911889:19252..19309 | Clytia hemisphaerica | exon |
| TCONS_00040849-exon-sc0002594-1510915933:19252..19309 | TCONS_00040849-exon-sc0002594-1510915933:19252..19309 | Clytia hemisphaerica | exon |
| TCONS_00040849-exon-sc0002594-1575043694:19252..19309 | TCONS_00040849-exon-sc0002594-1575043694:19252..19309 | Clytia hemisphaerica | exon |
| TCONS_00040849-exon-sc0002594-1491911889:19650..20582 | TCONS_00040849-exon-sc0002594-1491911889:19650..20582 | Clytia hemisphaerica | exon |
| TCONS_00040849-exon-sc0002594-1510915933:19650..20582 | TCONS_00040849-exon-sc0002594-1510915933:19650..20582 | Clytia hemisphaerica | exon |
| TCONS_00040849-exon-sc0002594-1575043694:19650..20582 | TCONS_00040849-exon-sc0002594-1575043694:19650..20582 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002594 | supercontig | sc0002594:18094..20582 + |
Blast
The following BLAST results are available for this feature:
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