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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040848 ID=TCONS_00040848|Name=TCONS_00040848|organism=Clytia hemisphaerica|type=transcript|length=1412bp
ATTGATTTGGTTTTTTTTATATTGATTTTTAATTTCCATTTATCACACCA
TTTAATGATTTCTGTTAGATGTTTTTGTAATCTTATGTTGTGGTTGTAAT
TGTTATTTGATGTGCGTGCGTATAGTGCTAGATCGTCAGCAAATTGTGAG
AGCATGGTATTGAGTTTTGTTGGTATGTCGCTTGCAAATAGAATGAATAA
CAACGGGCTGAGGCAACTGCCTTGTGGTAGGCCCTCCTTTGGGTAGAAGG
AGTTTGATTTTTCATTTTCAATCTGAATGTAGATTTTTCTGTTATGTAAA
AAACTGTTTATGATGTTTAGATCTTTTTTGGGTATATTCATTAAGTGGAG
TTTGTAGAGTAAGCCTTTTTTCCAGATTTTATCAAAACATTTTTCGAAAT
CGATAAAAATTGCGTCGATACCACTTTTTCTGTTAAATGCTTCATATATT
TTTTGAGTTAGTAAATATAATTGATCATTGGTGTTTCTTTTTTTTCTGAA
GCCAGATTGCTCTTTATTAATTTTATTATTTTCTTCTGCCCATTTCCTGA
TTTTGCTTTCAAGGGTTTTTTCAAAGAGTTTCCCGAATTGATTGAGAAGT
GTTATTGGTCTGTAATTTTTTGTGTCGTTTTTTGCTCCTTTATTTTTGTA
CAGCATGATAACTTTTCCTTCTTTCCATCTCTTCGGAAAGTACCCTATGT
CGTAACAAGAATCGAAAATTTTTTTGAGGATGGGCGATAGGCTTGGTTCT
AGGTATTTTATCAAGGTGTTTTTGATTGTATCTATACCAGGGGCTTTGTT
GTTTTTAAGATTTTTTATAGTTTTTGAGATTTCGTCTGTAGTGAAAAAAT
TTTCGTTTGATGGTTCGGTTGTGAAATTTTGTTGGTTATACCAACTATTT
ACGTCGTTTTCGTTTTCTTGGTCTGATGTTTCATTGCCTTGGAAAATTTC
TTTTTGTGCATTTTTGAAGATTTCTGCTATTTCATTTTTAATTGAGGTAT
CAGTTTTTGTAATTGGATTGAAAATCTTTTTTATTGTTGGTTTAGGATCT
TGGCCTAAAATTTTGTTGATACCTTTCCAACTTTCTTTTGAGTTTTTTGA
GTTTGCCTGGTCGATATGTTTGTTCATTAATCTGTTTTCTGAGTCTTTGA
TAGCCTTTTGAATTTTTTTGATTAGCCTGTTGACTTGGTTTTTTATTATT
GGGTTTCTAGTGCGTTTGTATTCCTTTAACAACCTTCTTTTTTCTTGTAT
GTCTTTTCTGATGTCTTTGTTTATTCCATGATTCGTTCTGTTTATTGTAA
TTTCTGGGATTAATTTGTTGACTGTGTTAATGTGTTTTTCTAGTTTGTTG
ATGGTGTGGTCTATTTCATTTTTCGTTGATGGCGTGTTCTGGAATTTTTG
GGAAAAGAGATT Run BLAST on NCBI protein sequence of TCONS_00040848-protein >TCONS_00040848-protein ID=TCONS_00040848-protein|Name=TCONS_00040848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp
NLFSQKFQNTPSTKNEIDHTINKLEKHINTVNKLIPEITINRTNHGINKD
IRKDIQEKRRLLKEYKRTRNPIIKNQVNRLIKKIQKAIKDSENRLMNKHI
DQANSKNSKESWKGINKILGQDPKPTIKKIFNPITKTDTSIKNEIAEIFK
NAQKEIFQGNETSDQENENDVNSWYNQQNFTTEPSNENFFTTDEISKTIK
NLKNNKAPGIDTIKNTLIKYLEPSLSPILKKIFDSCYDIGYFPKRWKEGK
VIMLYKNKGAKNDTKNYRPITLLNQFGKLFEKTLESKIRKWAEENNKINK
EQSGFRKKRNTNDQLYLLTQKIYEAFNRKSGIDAIFIDFEKCFDKIWKKG
LLYKLHLMNIPKKDLNIINSFLHNRKIYIQIENEKSNSFYPKEGLPQGSC
LSPLLFILFASDIPTKLNTMLSQFADDLALYARTSNNNYNHNIRLQKHLT
EIIKWCDKWKLKINIKKTKS Run BLAST on NCBI transcript from alignment at sc0002593:21500..22911 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040848 ID=TCONS_00040848|Name=TCONS_00040848|organism=Clytia hemisphaerica|type=transcript|length=1412bp|location=Sequence derived from alignment at sc0002593:21500..22911 (Clytia hemisphaerica)
AATCTCTTTTCCCAAAAATTCCAGAACACGCCATCAACGAAAAATGAAAT
AGACCACACCATCAACAAACTAGAAAAACACATTAACACAGTCAACAAAT
TAATCCCAGAAATTACAATAAACAGAACGAATCATGGAATAAACAAAGAC
ATCAGAAAAGACATACAAGAAAAAAGAAGGTTGTTAAAGGAATACAAACG
CACTAGAAACCCAATAATAAAAAACCAAGTCAACAGGCTAATCAAAAAAA
TTCAAAAGGCTATCAAAGACTCAGAAAACAGATTAATGAACAAACATATC
GACCAGGCAAACTCAAAAAACTCAAAAGAAAGTTGGAAAGGTATCAACAA
AATTTTAGGCCAAGATCCTAAACCAACAATAAAAAAGATTTTCAATCCAA
TTACAAAAACTGATACCTCAATTAAAAATGAAATAGCAGAAATCTTCAAA
AATGCACAAAAAGAAATTTTCCAAGGCAATGAAACATCAGACCAAGAAAA
CGAAAACGACGTAAATAGTTGGTATAACCAACAAAATTTCACAACCGAAC
CATCAAACGAAAATTTTTTCACTACAGACGAAATCTCAAAAACTATAAAA
AATCTTAAAAACAACAAAGCCCCTGGTATAGATACAATCAAAAACACCTT
GATAAAATACCTAGAACCAAGCCTATCGCCCATCCTCAAAAAAATTTTCG
ATTCTTGTTACGACATAGGGTACTTTCCGAAGAGATGGAAAGAAGGAAAA
GTTATCATGCTGTACAAAAATAAAGGAGCAAAAAACGACACAAAAAATTA
CAGACCAATAACACTTCTCAATCAATTCGGGAAACTCTTTGAAAAAACCC
TTGAAAGCAAAATCAGGAAATGGGCAGAAGAAAATAATAAAATTAATAAA
GAGCAATCTGGCTTCAGAAAAAAAAGAAACACCAATGATCAATTATATTT
ACTAACTCAAAAAATATATGAAGCATTTAACAGAAAAAGTGGTATCGACG
CAATTTTTATCGATTTCGAAAAATGTTTTGATAAAATCTGGAAAAAAGGC
TTACTCTACAAACTCCACTTAATGAATATACCCAAAAAAGATCTAAACAT
CATAAACAGTTTTTTACATAACAGAAAAATCTACATTCAGATTGAAAATG
AAAAATCAAACTCCTTCTACCCAAAGGAGGGCCTACCACAAGGCAGTTGC
CTCAGCCCGTTGTTATTCATTCTATTTGCAAGCGACATACCAACAAAACT
CAATACCATGCTCTCACAATTTGCTGACGATCTAGCACTATACGCACGCA
CATCAAATAACAATTACAACCACAACATAAGATTACAAAAACATCTAACA
GAAATCATTAAATGGTGTGATAAATGGAAATTAAAAATCAATATAAAAAA
AACCAAATCAAT Coding sequence (CDS) from alignment at sc0002593:21500..22911 >TCONS_00040848 ID=TCONS_00040848|Name=TCONS_00040848|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at sc0002593:21500..22911 (Clytia hemisphaerica)
AATCTCTTTTCCCAAAAATTCCAGAACACGCCATCAACGAAAAATGAAAT
AGACCACACCATCAACAAACTAGAAAAACACATTAACACAGTCAACAAAT
TAATCCCAGAAATTACAATAAACAGAACGAATCATGGAATAAACAAAGAC
ATCAGAAAAGACATACAAGAAAAAAGAAGGTTGTTAAAGGAATACAAACG
CACTAGAAACCCAATAATAAAAAACCAAGTCAACAGGCTAATCAAAAAAA
TTCAAAAGGCTATCAAAGACTCAGAAAACAGATTAATGAACAAACATATC
GACCAGGCAAACTCAAAAAACTCAAAAGAAAGTTGGAAAGGTATCAACAA
AATTTTAGGCCAAGATCCTAAACCAACAATAAAAAAGATTTTCAATCCAA
TTACAAAAACTGATACCTCAATTAAAAATGAAATAGCAGAAATCTTCAAA
AATGCACAAAAAGAAATTTTCCAAGGCAATGAAACATCAGACCAAGAAAA
CGAAAACGACGTAAATAGTTGGTATAACCAACAAAATTTCACAACCGAAC
CATCAAACGAAAATTTTTTCACTACAGACGAAATCTCAAAAACTATAAAA
AATCTTAAAAACAACAAAGCCCCTGGTATAGATACAATCAAAAACACCTT
GATAAAATACCTAGAACCAAGCCTATCGCCCATCCTCAAAAAAATTTTCG
ATTCTTGTTACGACATAGGGTACTTTCCGAAGAGATGGAAAGAAGGAAAA
GTTATCATGCTGTACAAAAATAAAGGAGCAAAAAACGACACAAAAAATTA
CAGACCAATAACACTTCTCAATCAATTCGGGAAACTCTTTGAAAAAACCC
TTGAAAGCAAAATCAGGAAATGGGCAGAAGAAAATAATAAAATTAATAAA
GAGCAATCTGGCTTCAGAAAAAAAAGAAACACCAATGATCAATTATATTT
ACTAACTCAAAAAATATATGAAGCATTTAACAGAAAAAGTGGTATCGACG
CAATTTTTATCGATTTCGAAAAATGTTTTGATAAAATCTGGAAAAAAGGC
TTACTCTACAAACTCCACTTAATGAATATACCCAAAAAAGATCTAAACAT
CATAAACAGTTTTTTACATAACAGAAAAATCTACATTCAGATTGAAAATG
AAAAATCAAACTCCTTCTACCCAAAGGAGGGCCTACCACAAGGCAGTTGC
CTCAGCCCGTTGTTATTCATTCTATTTGCAAGCGACATACCAACAAAACT
CAATACCATGCTCTCACAATTTGCTGACGATCTAGCACTATACGCACGCA
CATCAAATAACAATTACAACCACAACATAAGATTACAAAAACATCTAACA
GAAATCATTAAATGGTGTGATAAATGGAAATTAAAAATCAATATAAAAAA
AACCAAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040848-exon-sc0002593-1491911889:21500..22911 | TCONS_00040848-exon-sc0002593-1491911889:21500..22911 | Clytia hemisphaerica | exon |
| TCONS_00040848-exon-sc0002593-1510915933:21500..22911 | TCONS_00040848-exon-sc0002593-1510915933:21500..22911 | Clytia hemisphaerica | exon |
| TCONS_00040848-exon-sc0002593-1575043694:21500..22911 | TCONS_00040848-exon-sc0002593-1575043694:21500..22911 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002593 | supercontig | sc0002593:21500..22911 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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