|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040844 ID=TCONS_00040844|Name=TCONS_00040844|organism=Clytia hemisphaerica|type=transcript|length=1109bp
CTTGTACATTATGTAAATTAGTttggtcattatttttttgaacGGGTGAA
ATtactaatattttttttttgaaaaatcaaaatctttttaattttagttt
tttttgaattttgaccaaaaaatctgtttgtttttattttgtaagtattt
ttagATGTAGATTTTATCGAGTACaattatttccaattttttcttctata
cataaatttttaaagggataatcagatggtttgagattttttgccTGGTT
TGCCACGGTTTCCTCTATGGTTTTGAGTGAAATCGCCAAGTATTTTtctc
taactataattattcTAAAATCGATNGGTTTCCTCCGTGGTTTTGAGTGA
AATCGCCAAGTATTTTTCTCTAACTATATTCTAAAATCGAGATATCacaa
tttaaaatttctgaaaatgggtACTTACACGGGTTCTTAAGTTGAAGTTC
TATGTTTTTTACTAAAAGTCAAACACTTTGGGaaatatttaggcaaaaat
attttgaagcttTGCTCATCCCAAATATCCCAAACCACCTGATTATCCCT
TTACGCTTACAACAGGCGTTCTCAGTTGCAGGCTTATGAGTGGTCCGTTT
AAACAAGAAAATTTGTACCATTGAGAATTCAAGTAATCACGTGACAGAAA
GGATTCATTCAAATCGTGGTCAGAAGACCTCTGCAAAACCACAGTTTATT
ATAGTATATATGATTAATCAATCAACTTGACCTATAACGAGAATGCGTTT
GTTTTGCTAGAGGATGTCAGCAACTTTCACTCACGTAGGTTGCTAGCATC
CACTAacggccccccagcggtttgcgtgaatgcgtaaatggtcattttcg
gttgcgtgaatgcgtgaaaattggagaaaaaaatgcgtgaatctAGGCTA
TTTTGTACGTGAATACgcgaattttcccttttttccaccgatcatgtgca
gttttcccgattttccaatgtttccccgaattttcccgaaaattttccga
tttcatggaaaatcgggttattgcgtgaaactctaggaaaatttgcgtga
attcgtgaatttcgaaaaaaattgattgcgtgaattgagggtccgctggg
gggggggNN Run BLAST on NCBI transcript from alignment at sc0002592:19490..20598 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040844 ID=TCONS_00040844|Name=TCONS_00040844|organism=Clytia hemisphaerica|type=transcript|length=1109bp|location=Sequence derived from alignment at sc0002592:19490..20598 (Clytia hemisphaerica)
NNccccccccccagcggaccctcaattcacgcaatcaatttttttcgaaa
ttcacgaattcacgcaaattttcctagagtttcacgcaataacccgattt
tccatgaaatcggaaaattttcgggaaaattcggggaaacattggaaaat
cgggaaaactgcacatgatcggtggaaaaaagggaaaattcgcGTATTCA
CGTACAAAATAGCCTagattcacgcatttttttctccaattttcacgcat
tcacgcaaccgaaaatgaccatttacgcattcacgcaaaccgctgggggg
ccgtTAGTGGATGCTAGCAACCTACGTGAGTGAAAGTTGCTGACATCCTC
TAGCAAAACAAACGCATTCTCGTTATAGGTCAAGTTGATTGATTAATCAT
ATATACTATAATAAACTGTGGTTTTGCAGAGGTCTTCTGACCACGATTTG
AATGAATCCTTTCTGTCACGTGATTACTTGAATTCTCAATGGTACAAATT
TTCTTGTTTAAACGGACCACTCATAAGCCTGCAACTGAGAACGCCTGTTG
TAAGCGTAAAGGGATAATCAGGTGGTTTGGGATATTTGGGATGAGCAaag
cttcaaaatatttttgcctaaatatttCCCAAAGTGTTTGACTTTTAGTA
AAAAACATAGAACTTCAACTTAAGAACCCGTGTAAGTacccattttcaga
aattttaaattgtGATATCTCGATTTTAGAATATAGTTAGAGAAAAATAC
TTGGCGATTTCACTCAAAACCACGGAGGAAACCNATCGATTTTAgaataa
ttatagttagagaAAAATACTTGGCGATTTCACTCAAAACCATAGAGGAA
ACCGTGGCAAACCAggcaaaaaatctcaaaccatctgattatccctttaa
aaatttatgtatagaagaaaaaattggaaataattGTACTCGATAAAATC
TACATctaaaaatacttacaaaataaaaacaaacagattttttggtcaaa
attcaaaaaaaactaaaattaaaaagattttgatttttcaaaaaaaaaat
attagtaATTTCACCCgttcaaaaaaataatgaccaaACTAATTTACATA
ATGTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040844-exon-sc0002592-1491911889:19490..20598 | TCONS_00040844-exon-sc0002592-1491911889:19490..20598 | Clytia hemisphaerica | exon |
| TCONS_00040844-exon-sc0002592-1510915933:19490..20598 | TCONS_00040844-exon-sc0002592-1510915933:19490..20598 | Clytia hemisphaerica | exon |
| TCONS_00040844-exon-sc0002592-1575043694:19490..20598 | TCONS_00040844-exon-sc0002592-1575043694:19490..20598 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002592 | supercontig | sc0002592:19490..20598 . |
Blast
The following BLAST results are available for this feature:
|
