TCONS_00040841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040841
Unique NameTCONS_00040841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040841 ID=TCONS_00040841|Name=TCONS_00040841|organism=Clytia hemisphaerica|type=transcript|length=307bp
ctttcagatgaagaaaaaaagactttgatcATATTTTTCGAAGAAAACCC
TGCATTATGGGATGGGGCCCATCCCCATAACAAATGCAAGAGAACAAAGG
AGGAATTAAGGAAGAATCTTGTTGGATTATTTGACGAACTATACAGTATT
GAAACtcttgaaaaaagttttcattcgTTAAGAACTTCTTTCGTTAGGGA
ATGGAAGAAGAAAGTCACACACGCAGAATCTGAGGAAAAGGATATCCCGC
TTAAGAAGTGGAAATTCATGgatgaaatgaattttcttgTAAAGGAGATT
AATCgtg
Run BLAST on NCBI

protein sequence of TCONS_00040841-protein

>TCONS_00040841-protein ID=TCONS_00040841-protein|Name=TCONS_00040841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
LSDEEKKTLIIFFEENPALWDGAHPHNKCKRTKEELRKNLVGLFDELYSI
ETLEKSFHSLRTSFVREWKKKVTHAESEEKDIPLKKWKFMDEMNFLVKEI
NR
Run BLAST on NCBI

transcript from alignment at sc0002591:18009..18315

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040841 ID=TCONS_00040841|Name=TCONS_00040841|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at sc0002591:18009..18315 (Clytia hemisphaerica)
cacGATTAATCTCCTTTAcaagaaaattcatttcatcCATGAATTTCCAC
TTCTTAAGCGGGATATCCTTTTCCTCAGATTCTGCGTGTGTGACTTTCTT
CTTCCATTCCCTAACGAAAGAAGTTCTTAAcgaatgaaaacttttttcaa
gaGTTTCAATACTGTATAGTTCGTCAAATAATCCAACAAGATTCTTCCTT
AATTCCTCCTTTGTTCTCTTGCATTTGTTATGGGGATGGGCCCCATCCCA
TAATGCAGGGTTTTCTTCGAAAAATATgatcaaagtctttttttcttcat
ctgaaag

Coding sequence (CDS) from alignment at sc0002591:18009..18315

>TCONS_00040841 ID=TCONS_00040841|Name=TCONS_00040841|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0002591:18009..18315 (Clytia hemisphaerica)
acGATTAATCTCCTTTAcaagaaaattcatttcatcCATGAATTTCCACT
TCTTAAGCGGGATATCCTTTTCCTCAGATTCTGCGTGTGTGACTTTCTTC
TTCCATTCCCTAACGAAAGAAGTTCTTAAcgaatgaaaacttttttcaag
aGTTTCAATACTGTATAGTTCGTCAAATAATCCAACAAGATTCTTCCTTA
ATTCCTCCTTTGTTCTCTTGCATTTGTTATGGGGATGGGCCCCATCCCAT
AATGCAGGGTTTTCTTCGAAAAATATgatcaaagtctttttttcttcatc
tgaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024911XLOC_024911Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040841-exon-sc0002591-1491911889:18009..18315TCONS_00040841-exon-sc0002591-1491911889:18009..18315Clytia hemisphaericaexon
TCONS_00040841-exon-sc0002591-1510915933:18009..18315TCONS_00040841-exon-sc0002591-1510915933:18009..18315Clytia hemisphaericaexon
TCONS_00040841-exon-sc0002591-1575043694:18009..18315TCONS_00040841-exon-sc0002591-1575043694:18009..18315Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040841-proteinTCONS_00040841-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002591supercontigsc0002591:18009..18315 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.352805	0	0.801539	0	0.771087	0	1.74184	0.609752	0	0.73309	0.240952	1.20309	0.249883	0.205438	0	0.271597	0.278378	0	1.6098	1.04941	0.511864	0	0.377136	2.71909	3.81342	0	0	0.401562	0.409128
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006578MADF-dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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