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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040828 ID=TCONS_00040828|Name=TCONS_00040828|organism=Clytia hemisphaerica|type=transcript|length=1184bp
TATCCAAACAAATTTAACTGCCTTCCTGGAAACTATACTTTACCATTACA
ACATAAACAAAGACACCTTTAAGTATCTTCTACCACCAAATGAACCACGA
ATCAACCTTTTCTATATCCTACCTAAAATCCACAAAGGTATTCCAGGAAG
GCTCATTGTATCGTCTGTAAACTCGTTAACAGAAAACGTATCACAATTCT
TAACAAAATGCATACAGCCACTAACACCAAACTTACACTCCTTCATTAAA
GACacaaaatactttttaaaaagattgaTGACAAAGAAACACTTGgctaa
acaaacaaaatatctcCTCACTATTGATGTCAAATCTTTATACAACAATA
TACCCCATAACGAAGGCATTGAAGCATGCCTTCATTATACAAAATTACAT
AAAAAGTCACTCCCTACTTATACACCGAACAACAAAATTTTAGAGACACT
CTTTAAATTTGTCTTAGAAAACAACTACTTCACTTTTGAAGAAACACTCT
ACCACCAACGCTTCGGGACAGCGATGGGGACCAAAATGGCGCCGCCGTAC
GCGACCTTATTTCTCGGGAAACTAGAAGAAGAAAAGATTTCCATAAACCC
ATTTCTGGAATACATACTAGAATATGTAAGATTTCTATATGACATCTTTA
TTCTTTGGGCTGGAAGCCTTCAGAAattaaaagatttagaaacccACATA
AATTCTATCCACCCAACCATCAAGTTCACTGTCGAATATTCCCCCGACCA
AATCAACTTTCTAGACACAACAATATACATTGTCAAATcaataaaagaat
ttaaaagtaaggtttataaaAAAACGACAGATACAAAATCACTCTTACAC
TACTCGTCATACCACCCGAACCACACCAAAGAAAACGTCATCTACACACA
GGCTCTTAGGTGCCGACTTTTAACAACTgatgaaagaaatttgaaaaaag
aattcagTGAACTCGGCTCGACATTAATACAGCGGCCTACCCCCTGACAT
TGATAAATGAACAATTAAAGAAACTTCACAACATTAGCCAAAACGACTGT
TTCCACAAAAGGAGAATACCAAATAAAACCACTAATAACCATGAAAACGG
TGAATACAGCAACCCCCTACCCTTTATTGTAGAATACTATGAGAACTTGG
CTCCCTTGAAACAAATACTCCATAGACACTGGCA Run BLAST on NCBI protein sequence of TCONS_00040828-protein >TCONS_00040828-protein ID=TCONS_00040828-protein|Name=TCONS_00040828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
IQTNLTAFLETILYHYNINKDTFKYLLPPNEPRINLFYILPKIHKGIPGR
LIVSSVNSLTENVSQFLTKCIQPLTPNLHSFIKDTKYFLKRLMTKKHLAK
QTKYLLTIDVKSLYNNIPHNEGIEACLHYTKLHKKSLPTYTPNNKILETL
FKFVLENNYFTFEETLYHQRFGTAMGTKMAPPYATLFLGKLEEEKISINP
FLEYILEYVRFLYDIFILWAGSLQKLKDLETHINSIHPTIKFTVEYSPDQ
INFLDTTIYIVKSIKEFKSKVYKKTTDTKSLLHYSSYHPNHTKENVIYTQ
ALRCRLLTTDERNLKKEFSELGSTLIQRPTP Run BLAST on NCBI transcript from alignment at sc0002580:18771..19954 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040828 ID=TCONS_00040828|Name=TCONS_00040828|organism=Clytia hemisphaerica|type=transcript|length=1184bp|location=Sequence derived from alignment at sc0002580:18771..19954 (Clytia hemisphaerica)
TGCCAGTGTCTATGGAGTATTTGTTTCAAGGGAGCCAAGTTCTCATAGTA
TTCTACAATAAAGGGTAGGGGGTTGCTGTATTCACCGTTTTCATGGTTAT
TAGTGGTTTTATTTGGTATTCTCCTTTTGTGGAAACAGTCGTTTTGGCTA
ATGTTGTGAAGTTTCTTTAATTGTTCATTTATCAATGTCAGGGGGTAGGC
CGCTGTATTAATGTCGAGCCGAGTTCActgaattcttttttcaaatttct
ttcatcAGTTGTTAAAAGTCGGCACCTAAGAGCCTGTGTGTAGATGACGT
TTTCTTTGGTGTGGTTCGGGTGGTATGACGAGTAGTGTAAGAGTGATTTT
GTATCTGTCGTTTTtttataaaccttacttttaaattcttttattgATTT
GACAATGTATATTGTTGTGTCTAGAAAGTTGATTTGGTCGGGGGAATATT
CGACAGTGAACTTGATGGTTGGGTGGATAGAATTTATGTgggtttctaaa
tcttttaatTTCTGAAGGCTTCCAGCCCAAAGAATAAAGATGTCATATAG
AAATCTTACATATTCTAGTATGTATTCCAGAAATGGGTTTATGGAAATCT
TTTCTTCTTCTAGTTTCCCGAGAAATAAGGTCGCGTACGGCGGCGCCATT
TTGGTCCCCATCGCTGTCCCGAAGCGTTGGTGGTAGAGTGTTTCTTCAAA
AGTGAAGTAGTTGTTTTCTAAGACAAATTTAAAGAGTGTCTCTAAAATTT
TGTTGTTCGGTGTATAAGTAGGGAGTGACTTTTTATGTAATTTTGTATAA
TGAAGGCATGCTTCAATGCCTTCGTTATGGGGTATATTGTTGTATAAAGA
TTTGACATCAATAGTGAGgagatattttgtttgtttagcCAAGTGTTTCT
TTGTCAtcaatctttttaaaaagtattttgtGTCTTTAATGAAGGAGTGT
AAGTTTGGTGTTAGTGGCTGTATGCATTTTGTTAAGAATTGTGATACGTT
TTCTGTTAACGAGTTTACAGACGATACAATGAGCCTTCCTGGAATACCTT
TGTGGATTTTAGGTAGGATATAGAAAAGGTTGATTCGTGGTTCATTTGGT
GGTAGAAGATACTTAAAGGTGTCTTTGTTTATGTTGTAATGGTAAAGTAT
AGTTTCCAGGAAGGCAGTTAAATTTGTTTGGATA Coding sequence (CDS) from alignment at sc0002580:18771..19954 >TCONS_00040828 ID=TCONS_00040828|Name=TCONS_00040828|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0002580:18771..19954 (Clytia hemisphaerica)
TCAGGGGGTAGGCCGCTGTATTAATGTCGAGCCGAGTTCActgaattctt
ttttcaaatttctttcatcAGTTGTTAAAAGTCGGCACCTAAGAGCCTGT
GTGTAGATGACGTTTTCTTTGGTGTGGTTCGGGTGGTATGACGAGTAGTG
TAAGAGTGATTTTGTATCTGTCGTTTTtttataaaccttacttttaaatt
cttttattgATTTGACAATGTATATTGTTGTGTCTAGAAAGTTGATTTGG
TCGGGGGAATATTCGACAGTGAACTTGATGGTTGGGTGGATAGAATTTAT
GTgggtttctaaatcttttaatTTCTGAAGGCTTCCAGCCCAAAGAATAA
AGATGTCATATAGAAATCTTACATATTCTAGTATGTATTCCAGAAATGGG
TTTATGGAAATCTTTTCTTCTTCTAGTTTCCCGAGAAATAAGGTCGCGTA
CGGCGGCGCCATTTTGGTCCCCATCGCTGTCCCGAAGCGTTGGTGGTAGA
GTGTTTCTTCAAAAGTGAAGTAGTTGTTTTCTAAGACAAATTTAAAGAGT
GTCTCTAAAATTTTGTTGTTCGGTGTATAAGTAGGGAGTGACTTTTTATG
TAATTTTGTATAATGAAGGCATGCTTCAATGCCTTCGTTATGGGGTATAT
TGTTGTATAAAGATTTGACATCAATAGTGAGgagatattttgtttgttta
gcCAAGTGTTTCTTTGTCAtcaatctttttaaaaagtattttgtGTCTTT
AATGAAGGAGTGTAAGTTTGGTGTTAGTGGCTGTATGCATTTTGTTAAGA
ATTGTGATACGTTTTCTGTTAACGAGTTTACAGACGATACAATGAGCCTT
CCTGGAATACCTTTGTGGATTTTAGGTAGGATATAGAAAAGGTTGATTCG
TGGTTCATTTGGTGGTAGAAGATACTTAAAGGTGTCTTTGTTTATGTTGT
AATGGTAAAGTATAGTTTCCAGGAAGGCAGTTAAATTTGTTTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040828-exon-sc0002580-1491911889:18771..19954 | TCONS_00040828-exon-sc0002580-1491911889:18771..19954 | Clytia hemisphaerica | exon |
| TCONS_00040828-exon-sc0002580-1510915933:18771..19954 | TCONS_00040828-exon-sc0002580-1510915933:18771..19954 | Clytia hemisphaerica | exon |
| TCONS_00040828-exon-sc0002580-1575043694:18771..19954 | TCONS_00040828-exon-sc0002580-1575043694:18771..19954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002580 | supercontig | sc0002580:18771..19954 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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