TCONS_00040800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040800
Unique NameTCONS_00040800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040800 ID=TCONS_00040800|Name=TCONS_00040800|organism=Clytia hemisphaerica|type=transcript|length=1266bp
TTAGCTTTCAAATAATTAGTCATCATAACAGATGCAAGCTGCAAGAGATG
ATTGCTATAGTGTTGAATGGATGTTAGGGTAATTACCAATATATCCATTC
ACTCAAAATCGTCAAATTGTGTAAGAAAAAACCATGGACAAAAAATGGCT
TCAAAATCGCCGTCAAACGACCTCAACATTCATTCTCATGAACATTTCTC
TTGGAATTGAACAGTCAATCACATTCGCTTCATTATTCATCTACCTCAAA
GATGTCTTACACGTCTCTGGTAATCGTTTGACCACATTCTACAGCGCTAT
ATCGGGAATTTATTTCCTATCTCAAATCATATCGTCATTGGCGTTAACCA
GAATCTTTGATAAATATCGTCGACTTAAGTTAACTTTCTTCATTGTTAAC
AACTTCACCATTGCTGGTAATGCACTGTACACACTTCCATATTCACCCTG
GTGTTTACTGGCTGGTCGTCTCATCTCTGGTGTTGCAGGATGCATCAAAC
CAATCATGGTATCCGAATTGACCAGATCATTTCCTAAAGATGAGCTTTTA
CCACAAATATCTAGATTCGCATTTGCTTTTTCAGTTGGTTTCACTTTAGG
accttttgttaattttgtattCCTCAAAGCTGATTTCCGATTCTTAGGTA
TACCAATCACTTATGCTAATGGTGCTGGTTTATTGATAACTTTCTTATTC
ATCTTGATGCAGATTCTAACTGTGTTTTTCGTTACCGACTTGTCAAGAGA
ATTCGACCTAAAAAAATCGCATAAAGAAAGTCAAATACTGGAGAAAGAAA
GACTTTTAGAAACACAATCactaaatgaaaaagaaaagattgatcTAGAT
TTAGGGAATTCAGGATTCGATTCCAAGGAGGAACTAACCCTTATTGAGGA
TACTTCTGATGGTCAGCCCTGTCAACCGACACTAGATCTGGATAATGAGA
ATCATGATGACGGATCTGCACCAATGTTACCAAGCGAACCAGACAAGAGT
ATCCGAAATTCACTATGGACATTATTTACAAGCATAGATGTTGTgctcat
ttttatattttcattttttgttttctttgaattGATAACTTATGATTCTT
GGACTCCAATGTTATGTACAGAAATTTTACATTGGGGAATTGTAGAGATT
AACTTAATCTTTCTTGGTAATAGTATCGCTGTTGGTATCATTTATCTTGC
GTGTTATTTCAGACCACCAGCAAAAGAACAGTTCTATACTCTGGCTGTAT
ATTCGTTTGTAGCTGG
Run BLAST on NCBI

protein sequence of TCONS_00040800-protein

>TCONS_00040800-protein ID=TCONS_00040800-protein|Name=TCONS_00040800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MDKKWLQNRRQTTSTFILMNISLGIEQSITFASLFIYLKDVLHVSGNRLT
TFYSAISGIYFLSQIISSLALTRIFDKYRRLKLTFFIVNNFTIAGNALYT
LPYSPWCLLAGRLISGVAGCIKPIMVSELTRSFPKDELLPQISRFAFAFS
VGFTLGPFVNFVFLKADFRFLGIPITYANGAGLLITFLFILMQILTVFFV
TDLSREFDLKKSHKESQILEKERLLETQSLNEKEKIDLDLGNSGFDSKEE
LTLIEDTSDGQPCQPTLDLDNENHDDGSAPMLPSEPDKSIRNSLWTLFTS
IDVVLIFIFSFFVFFELITYDSWTPMLCTEILHWGIVEINLIFLGNSIAV
GIIYLACYFRPPAKEQFYTLAVYSFVA
Run BLAST on NCBI

transcript from alignment at sc0002565:15845..20466-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040800 ID=TCONS_00040800|Name=TCONS_00040800|organism=Clytia hemisphaerica|type=transcript|length=4622bp|location=Sequence derived from alignment at sc0002565:15845..20466- (Clytia hemisphaerica)
TTAGCTTTCAAATAATTAGTCATCATAACAGATGCAAGCTGCAAGAGATG
ATTGCTATAGGTGAGTTTTGATCAAGAATATTTCAGTTCATTTAAAAAGG
ACCTTTTTTGCAGCGTTTTGAAATTACAGTCGAATCTCTAATTCGAATGA
TTCGAACCTCTATTATTCGAATCTTTCTGTAATTCTAACTAAATTATTGC
TCACATCAGCTTCAAAGTGGTTTAAATTACTCTCTGTAATTCGAACCTTT
CTCTAATCTGAAGAAATGTTTTGGTCCCTTGAAGATCGAGTTATAGAGAG
TCAACTGTATGGACTTACTGCAAATTTGTTTATGTCTTAACGTGAACATG
ATTAAACTGTGTACACTTTGTTTGTTTGTTTTTCTTGTTTATTGAAAACG
GTCTATTTCAAGCAAAATCTCGCTTGTTGGGGATGAGTTTAAAGCCCCGA
AGGGGCTAGAATAGAAATTTTTGGATGTGAAATGAAGCTACTTAATTTCC
CAACCAGAACAGCCACGCGTGGTGTTTAGACAAACGCCGAATTGGAAGTA
AAATCTATCGCTAGATTTAAAAAGTACAGTCTTCAAAAACAAAGGAACCG
CTACATACAATCCGTCGTCATGATTGCGGTGCATTCTGGGCGCGTTCTGG
ATGGGAAATAGGTGGCTTCACTTTTTCTAGGTTAGAGATTCTATTCAAGT
CCTTCGGGCTTTGAACTCGATGGGAAATTCTCTGTCCAGGATGATTCTAG
CCCTAGGTAGAAAATCAATAAGTCCATGGAGGGAAGCTGTGGAATTAAGA
AACGCAAAATAAGTTGTTCAAAATAAGAAGTTCGAAAATCGAGGAAGTGC
TGACCATATTTACCGTCGCACTCAGTCATTCAGGATCTACACAAATCAAA
AGCTAACTGTCTCCATCGCAGAAAAACAAAGATACATAAACTCGCTAGTA
TTTCTACAACATAAGTGCTTAAAAAACTGGTTCAACCGGTTTGCGACTGA
ATTACTGCATCAAACCATGTATGAATATCACCGATTATCTATTTTATTTT
ATTAGTAGAACGCATTATAAAAGAAACATCTTATTCTTATGTAGCGATTG
CCCTGTAGGGGCTTTTGTTGCTTCACGTAGCAGGCTTGTTGTGATGTTGA
TGTTTCTTCTGATTCTGAGCGGGCCGCTGCGGTTAAAAAATGTTCGCGCG
CAACTATTGCTTTATAAGAACCAAGTCAATAACTCTTGATACACGGTGAT
ATACTTTTCGGTAATTAGTTCTTGTAAAGGAATATGAAGATATTTTACTG
TATACGCAGTGCCGTAGGAAGCATTTTCATATTGAGGAGGGGGCTGAAGT
TTGGTGACACCGCGAGGGCCAACCATTTGGCCCGAGGGGGGAAATTTTGA
AAATTTGAGCTCTAGATGCACTCAAAACATGCACATAAAAGACAATTATG
ACAAATTAAAATAGAAAACCTTTGCATTTTGCAAAAAAAACATTTTTTAA
AAAATTATTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTATGCGCTAAGCTGTACACCTCAT
TTCTTTTTTTTATCAGCAAACCAATTTGTTTTTTCGTGTGTAAAAATATT
TTCGATATTGTGCTGCGCATATAATGGTTTCAAAGGAACGAGACAAGCGC
TCAGGGAATAGAAATATCTAGCTGTGCGTTTTTTGGATGGCGTTCCAATA
AAACGATCTGGTGGAATGCGGCCTTTAAACTTTCGCTCATTCTCGATTAT
GAATGCGTTGGCGGGGCATTCATAGCGACAGCTACTTGCTAGTATGAAAA
CAAGGGGTGGAAAAAACCCCGCTGTATTGCACGAGACCTGGTTTTCAATT
TTCTTTTAAATGTTGAATGTTTTTATAAAAATTTTTTTTTGGAAAACGAA
ATTTGCTTCTGTATCAACTGAAAGTTACGAGTCTATTCTTTTTCATAATG
GTACTATGTATGATATTCTAACGTACGAATGGATCATTAAGATAATTAAA
ATAATGCGGTCTTTTCAAGAATAACCCATACAATTTTTCCTAATTAAAAA
AATATGTATTGAACTGCAAAAGGGTGGTATCAAGATAGAATGATAATGCT
CTTTGCTTGATCAATTTTTATCGTTTGCTATAAAAGACATTTGAGTGGTA
AGGAATTGGTCAATTTATGAAAGTAATTGAGTTTTTGAGAAAACAAGTTT
GGTTAAGTTGGTGGAATGCTTGTGATGTGTTCAAGAAATTAATTTTTCTA
CAGTATATGTTTTCAAATTCACCATAGAGTACCTTGAAGGTACTATTTGG
AGAACTTTTTGGATAGGAAATGAGAAACCACTTTGCATGACTTGCGTCGG
TTTGGAATGGGAAGTAAAATCTATCGTCAAAATTTGAAAATGTACAATTC
GAAAACAAAGCAGTGCAAATAGCAGTGCAAATCTTAATGCTATACTTTTT
CCCGGAAAAAGATTCTCCTTCTCTAGCCCTTTGTGTTTGAAATTTCAATT
TCTTCAGGCAAAATATCTCAAACCATCTGATTATCCCTTAAAATGAATTC
AATTTCTTCATTTTAGTGTTGAATGGATGTTAGGGTAATTACCAATATAT
CCATTCACTCAAAATCGTCAAATTGTGTAAGAAAAAACCATGGACAAAAA
ATGGCTTCAAAATCGCCGTCAAACGACCTCAACATTCATTCTCATGAACA
TTTCTCTTGGAATTGAACAGTCAATCACATTCGCTTCATTATTCATCTAC
CTCAAAGATGTCTTACACGTCTCTGGTAATCGTTTGACCACATTCTACAG
CGCTATATCGGGAATTTATTTCCTATCTCAAATCATATCGTCATTGGCGT
TAACCAGAATCTTTGATAAATATCGTCGACTTAAGTTAACTTTCTTCATT
GTTAACAACTTCACCATTGCTGGTAATGCACTGTACACACTTCCATATTC
ACCCTGGTGTTTACTGGCTGGTCGTCTCATCTCTGGTGTTGCAGGATGCA
TCAAACCAATCATGGTATCCGAATTGACCAGATCATTTCCTAAAGATGAG
CTTTTACCACAAATATCTAGATTCGCATTTGCTTTTTCAGTTGGTTTCAC
TTTAGGACCTTTTGTTAATTTTGTATTCCTCAAAGCTGATTTCCGATTCT
TAGGTATACCAATCACTTATGCTAATGGTGCTGGTTTATTGATAACTTTC
TTATTCATCTTGATGCAGATTCTAACTGTGTTTTTCGTTACCGACTTGTC
AAGAGAATTCGACCTAAAAAAATCGCATAAAGAAAGTCAAATACTGGAGA
AAGAAAGACTTTTAGAAACACAATCACTAAATGAAAAAGAAAAGATTGAT
CTAGATTTAGGGAATTCAGGATTCGATTCCAAGGAGGAACTAACCCTTAT
TGAGGATACTTCTGATGGTCAGCCCTGTCAACCGACACTAGATCTGGATA
ATGAGAATCATGATGACGGATCTGCACCAATGTTACCAAGCGAACCAGAC
AAGAGTATCCGAAATTCACTATGGACATTATTTACAAGCATAGATGTTGT
GCTCATTTTTATATTTTCATTTTTTGTTTTCTTTGAATTGATAACTTATG
ATTCTTGGACTCCAATGTTATGTACAGAAATTTTACATTGGGGAATTGTA
GAGATTAACTTAATCTTTCTTGGTAATAGTATCGCTGTTGGTATCATTTA
TCTTGCGTGTTATTTCAGACCACCAGCAAAAGAACAGTTCTATACTCTGG
CTGTATATTCGTTTGTAGCTGG

Coding sequence (CDS) from alignment at sc0002565:15845..20466-

>TCONS_00040800 ID=TCONS_00040800|Name=TCONS_00040800|organism=Clytia hemisphaerica|type=CDS|length=1131bp|location=Sequence derived from alignment at sc0002565:15845..20466- (Clytia hemisphaerica)
ATGGACAAAAAATGGCTTCAAAATCGCCGTCAAACGACCTCAACATTCAT
TCTCATGAACATTTCTCTTGGAATTGAACAGTCAATCACATTCGCTTCAT
TATTCATCTACCTCAAAGATGTCTTACACGTCTCTGGTAATCGTTTGACC
ACATTCTACAGCGCTATATCGGGAATTTATTTCCTATCTCAAATCATATC
GTCATTGGCGTTAACCAGAATCTTTGATAAATATCGTCGACTTAAGTTAA
CTTTCTTCATTGTTAACAACTTCACCATTGCTGGTAATGCACTGTACACA
CTTCCATATTCACCCTGGTGTTTACTGGCTGGTCGTCTCATCTCTGGTGT
TGCAGGATGCATCAAACCAATCATGGTATCCGAATTGACCAGATCATTTC
CTAAAGATGAGCTTTTACCACAAATATCTAGATTCGCATTTGCTTTTTCA
GTTGGTTTCACTTTAGGACCTTTTGTTAATTTTGTATTCCTCAAAGCTGA
TTTCCGATTCTTAGGTATACCAATCACTTATGCTAATGGTGCTGGTTTAT
TGATAACTTTCTTATTCATCTTGATGCAGATTCTAACTGTGTTTTTCGTT
ACCGACTTGTCAAGAGAATTCGACCTAAAAAAATCGCATAAAGAAAGTCA
AATACTGGAGAAAGAAAGACTTTTAGAAACACAATCACTAAATGAAAAAG
AAAAGATTGATCTAGATTTAGGGAATTCAGGATTCGATTCCAAGGAGGAA
CTAACCCTTATTGAGGATACTTCTGATGGTCAGCCCTGTCAACCGACACT
AGATCTGGATAATGAGAATCATGATGACGGATCTGCACCAATGTTACCAA
GCGAACCAGACAAGAGTATCCGAAATTCACTATGGACATTATTTACAAGC
ATAGATGTTGTGCTCATTTTTATATTTTCATTTTTTGTTTTCTTTGAATT
GATAACTTATGATTCTTGGACTCCAATGTTATGTACAGAAATTTTACATT
GGGGAATTGTAGAGATTAACTTAATCTTTCTTGGTAATAGTATCGCTGTT
GGTATCATTTATCTTGCGTGTTATTTCAGACCACCAGCAAAAGAACAGTT
CTATACTCTGGCTGTATATTCGTTTGTAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024873XLOC_024873Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040800-proteinTCONS_00040800-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040800-exon-sc0002565-1575043694:20407..20466TCONS_00040800-exon-sc0002565-1575043694:20407..20466Clytia hemisphaericaexon
TCONS_00040800-exon-sc0002565-1575043694:15845..17050TCONS_00040800-exon-sc0002565-1575043694:15845..17050Clytia hemisphaericaexon
TCONS_00040800-exon-sc0002565-1510915933:20407..20466TCONS_00040800-exon-sc0002565-1510915933:20407..20466Clytia hemisphaericaexon
TCONS_00040800-exon-sc0002565-1510915933:15845..17050TCONS_00040800-exon-sc0002565-1510915933:15845..17050Clytia hemisphaericaexon
TCONS_00040800-exon-sc0002565-1491911889:20407..20466TCONS_00040800-exon-sc0002565-1491911889:20407..20466Clytia hemisphaericaexon
TCONS_00040800-exon-sc0002565-1491911889:15845..17050TCONS_00040800-exon-sc0002565-1491911889:15845..17050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002565supercontigsc0002565:15845..20466 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.7167	11.3888	4.5403	3.8416	0.680653	1.4957	4.42449	2.01924	3.20045	5.52475	1.15163	3.78206	3.05755	3.05584	2.41194	1.23945	2.73642	2.64775	1.86385	1.4261	0.755357	0.53885	9.14077	8.74375	0	0.032162	0.255795	0.317466	4.82925	3.88452
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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