TCONS_00040741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040741
Unique NameTCONS_00040741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040741 ID=TCONS_00040741|Name=TCONS_00040741|organism=Clytia hemisphaerica|type=transcript|length=625bp
CTTTTGATCTTAATCATTCTAAACCTTATTCTATTTTCGTTACTAgataa
acaacaaaaaaattacgTAAATAAAAAGACCAATTATGTTCAAAGAATCA
AGCTCAAATGGATATCAATTTATTACCAGATGAGATACTAGAAATAATCA
TTGCGTTCTCGGAAAAGGAAGATGCAAAAGCTTTATCACGAACATCAAAA
AGAATGTATAATCTTACTATTGAACGAATTNATATCAATTTATTACCAGA
TGAGATACTAGAAATAATCATTGCGTTCTCGGAAAAGGAAGATGCAAAAG
CTTTATCACGAACATCAAAAAGAATTTACAATCTTACTATAGAACGAATT
TGGTCAAAACCAAGATTTTATGGGAAACGAAATCATTCCTTCTTGACAAA
AATAACGAAATTTCCGATTAAAGAATTGCATACAAATGAGTTTAATTGTC
TTTGGTCTAATATTTGTGATATCATTTCTGGGCTTGACTTATTACATATA
GATAATGACGACGATGATGAAACTTTTGAAGACAGATTAGACGATATTTG
TGAAATTGCAAAACCACCAATTGTTCTGCACACAAATGCCCTTAATATGA
AATACAGAGACGACTTTGATTTGTT
Run BLAST on NCBI

protein sequence of TCONS_00040741-protein

>TCONS_00040741-protein ID=TCONS_00040741-protein|Name=TCONS_00040741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MDINLLPDEILEIIIAFSEKEDAKALSRTSKRMYNLTIERIXINLLPDEI
LEIIIAFSEKEDAKALSRTSKRIYNLTIERIWSKPRFYGKRNHSFLTKIT
KFPIKELHTNEFNCLWSNICDIISGLDLLHIDNDDDDETFEDRLDDICEI
AKPPIVLHTNALNMKYRDDFDL
Run BLAST on NCBI

transcript from alignment at sc0002543:19908..20532

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040741 ID=TCONS_00040741|Name=TCONS_00040741|organism=Clytia hemisphaerica|type=transcript|length=625bp|location=Sequence derived from alignment at sc0002543:19908..20532 (Clytia hemisphaerica)
AACAAATCAAAGTCGTCTCTGTATTTCATATTAAGGGCATTTGTGTGCAG
AACAATTGGTGGTTTTGCAATTTCACAAATATCGTCTAATCTGTCTTCAA
AAGTTTCATCATCGTCGTCATTATCTATATGTAATAAGTCAAGCCCAGAA
ATGATATCACAAATATTAGACCAAAGACAATTAAACTCATTTGTATGCAA
TTCTTTAATCGGAAATTTCGTTATTTTTGTCAAGAAGGAATGATTTCGTT
TCCCATAAAATCTTGGTTTTGACCAAATTCGTTCTATAGTAAGATTGTAA
ATTCTTTTTGATGTTCGTGATAAAGCTTTTGCATCTTCCTTTTCCGAGAA
CGCAATGATTATTTCTAGTATCTCATCTGGTAATAAATTGATATNAATTC
GTTCAATAGTAAGATTATACATTCTTTTTGATGTTCGTGATAAAGCTTTT
GCATCTTCCTTTTCCGAGAACGCAATGATTATTTCTAGTATCTCATCTGG
TAATAAATTGATATCCATTTGAGCTTGATTCTTTGAACATAATTGGTCTT
TTTATTTAcgtaatttttttgttgtttatcTAGTAACGAAAATAGAATAA
GGTTTAGAATGATTAAGATCAAAAG

Coding sequence (CDS) from alignment at sc0002543:19908..20532

>TCONS_00040741 ID=TCONS_00040741|Name=TCONS_00040741|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at sc0002543:19908..20532 (Clytia hemisphaerica)
CAAATCAAAGTCGTCTCTGTATTTCATATTAAGGGCATTTGTGTGCAGAA
CAATTGGTGGTTTTGCAATTTCACAAATATCGTCTAATCTGTCTTCAAAA
GTTTCATCATCGTCGTCATTATCTATATGTAATAAGTCAAGCCCAGAAAT
GATATCACAAATATTAGACCAAAGACAATTAAACTCATTTGTATGCAATT
CTTTAATCGGAAATTTCGTTATTTTTGTCAAGAAGGAATGATTTCGTTTC
CCATAAAATCTTGGTTTTGACCAAATTCGTTCTATAGTAAGATTGTAAAT
TCTTTTTGATGTTCGTGATAAAGCTTTTGCATCTTCCTTTTCCGAGAACG
CAATGATTATTTCTAGTATCTCATCTGGTAATAAATTGATATNAATTCGT
TCAATAGTAAGATTATACATTCTTTTTGATGTTCGTGATAAAGCTTTTGC
ATCTTCCTTTTCCGAGAACGCAATGATTATTTCTAGTATCTCATCTGGTA
ATAAATTGATATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024822XLOC_024822Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040741-proteinTCONS_00040741-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040741-exon-sc0002543-1491911889:19908..20532TCONS_00040741-exon-sc0002543-1491911889:19908..20532Clytia hemisphaericaexon
TCONS_00040741-exon-sc0002543-1510915933:19908..20532TCONS_00040741-exon-sc0002543-1510915933:19908..20532Clytia hemisphaericaexon
TCONS_00040741-exon-sc0002543-1575043694:19908..20532TCONS_00040741-exon-sc0002543-1575043694:19908..20532Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002543supercontigsc0002543:19908..20532 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.80466	3.54304	0.940834	0.6229	2.10836	1.22846	3.37339	2.59849	0.757419	0.473978	1.01096	0.134486	0.51973	0.962796	0.747943	1.79009	1.49185	1.32	0.0981581	0.582997	1.66254	1.54132	4.8587	5.15727	1.23615	2.79753	0.438539	0.982382	2.44562	2.47176
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top