TCONS_00040735 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00040735
Unique Name	TCONS_00040735
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	271

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002542:22..7289-

transcript sequence

>TCONS_00040735 ID=TCONS_00040735|Name=TCONS_00040735|organism=Clytia hemisphaerica|type=transcript|length=271bp
CAGTGAAAGAAAAAATGGCAAATGCAAAAAAGCCAAACGACAACGAGCAT
ATGGAGCAAGAACATCTTCGTCGTCATTTGCTccaacaaaaagaaaagtt
aCTTGCGGAAAAGTTGTACTGGGAGCACGAATGTAGAAAAAGCTACGACC
TGTATGAGACACAGAGGAAGAAGAATGATCttgaatttacaaaaagattA
AGTGGGAATAAGCACAAACGGTTATTGGTGCCATGCCAATGTGGCAAAGC
GCATGAGTACCTTTACCAGGG

Run BLAST on NCBI

transcript from alignment at sc0002542:22..7289-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00040735 ID=TCONS_00040735|Name=TCONS_00040735|organism=Clytia hemisphaerica|type=transcript|length=7268bp|location=Sequence derived from alignment at sc0002542:22..7289- (Clytia hemisphaerica)
CAGTGAAAGAAAAAATGGCAAATGCAAAAAAGCCAAACGACAACGAGCAT
ATGGAGCAAGAAGTGAGTGTTTTGATTTTTTAAAGTCTCTTCGGTATAAG
CTTGTATTTAGTTCCAGTTCCTTCAATTTCTCAACAAATGTTTCAACCTT
AAGATACTGACGGAAAGATTATTCAGATCGCTTTATTGAGATAAATTATT
CCAAAATCTACTAAAATAAATCTTATCGGAGTTTTTGATTTTTTAAAAAA
AAGCGATGCATTGTGGGATTGTTTCAGAAATCTCTTAGGAATTCCTAGCC
TGGATATCCAGGCTGTAAACTATTTCACAGTCTAGTTTTTTTGATATTTT
ATGTTCTGATTTACAGCTTGGTCTCCCTAGAGCGTTTTGCATTCTCCATA
TGAGAATGCAGTCTGCTTGCTTGCGCTCACTTCGCTAAAGCCGTAAGGAC
CAATCTACACGGCGCGGAGCAATTCTGAAGCGAAAATAGGATAGTCCTCC
ACTTGCTAGTGAAGATAGAACTTTCTGTTACATGAAAACATGAAAAAGAA
GAAAACAGAGGCAAGTTCATTTTCCAAGAAAACATGGTCTGATGGTTGGT
CATGATAATGCATGTAAACTTGTTCATGGACTCTGGTGTATATATATACC
GGGTGACCCACGAAAAAGTTCGGACCTTTCTCGGCGTCTTGAGGCCGAGC
AAATGTCCCAAAGTGCTCGGAATTTTGGTATTTAAAAAGTAGATATCCTA
ACTTAAAATTTGAGCTATCACTTTTTAAATTTGACCAACTAGTTCTCTAC
TTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNGTTGGACAAGAAGCTTGAATATTTGAAAGAGTGCTACTTTGCT
CTTTTGCCCGTTTGAAAAGTTTTTGTAGGTTGCGATTAATTGCTAGCTGG
TTCAATTTTTCAGCTTCTGTTTTCAGATACTCATTCTTAAGAAAACGTGC
TCGTAATCTGATCTTTTTACGAAGTGCCATGGGTGAATTATACGGTTTTT
GGTCAGTTTTGGAATATTTGTTTCAGCAGCAGAATTTATTGAGTGGATAA
AATGTCGATTTATAGTGTCATTATTTTCATTCTCAAGATTTCTAGTGTTA
ATGTTGTCGATTGTAGTTTGTATAAACTGATTTCTGATATTTTCGTTATC
TAACATTTTCAAATCGAGTTTTTCGTTTTTTTTCTTTTTGTTCCTTTTTC
TGTAGCGTGCAGCTTTGGTGCATGGCGTATTCAAGGTCGTGATAACTAAA
CGGTGATCACTGTCAAAATCATAGCTTCGGTGNNNNNNNNNNNNNNNNNN
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TCCTTGAGATAAACGTCTGACTTCCTGTAGGGCACAGATGCTGATATCTG
CTTTATCGATTTCGCGAATAATTCGTTCAAGCTTTTGGTCTTCTCGTCCT
GTACGTACGTTGATGGTTCCAAGTTTCCATTGATAGGTGTTTTGCATCGA
TTAGAATGTTCGAACAGGGTATATAAGGATGTGTTTGGTCAATTCCTCAC
CCAGAGACAATAATTCATCACATCACATTTTTGTTTGTTTTTAATAGTTG
TTTGTTCACTTATTCACTAATTCTTAATGGAGTGAATTTTTTATCTGTGT
AATCTTTTATTAAGTTCTGTTTTGCTGCCCTGGTTAGGCTGGGAATGTTT
TGGAAACATGGGTTTGCACTTTCATTCTCTAGGGAGACCAAGCCCTATAA
TTTTAGAACCTTTTGTATGTTGAGGAAAATTAGTTTTTTCTAAAATTTTG
AGCTTGGATATCCAGGCTAAGGAATTCCTCGAGAAAATTCTATTGTAATA
CTCCCGAAACAATCCCACAATGCATTGCTTTTTTAGAAAAAATCAAAAAC
TCCGATAAGATCTATTGAAAAGAAAATCAAAGAAGAACTTTTCAACGAAC
CTTAAATTTTTGGTACAAACCGACAGAGGTACTTTTTCTGATTAGAACTA
TTTGTATAATATCTTATCATAAAGGTGCTGCCTTTAAATGAACACTCAGA
ATCATTTTTCTCAACACCTTATCGGCCCTTTTTACGCCGGCCCTCATTCC
GCCACAGCCTAATTTTGGGCTTTTAGGACCGTAAATAACGCCAAAACTTG
TAAAAATCGCTATTCGCGCTTCAAAACAGTAAGTATTAACTAAAATTTAC
ATTAAAATGTTATGCTTCAGTATTAAACTGTTGAAAATTCCATTGAAGAT
CATTGATTTTCGTGAAGTTTTGGATATAAAGTGAAAAAAATGGATAGTTT
TCATCCTTCCTAAATGCCTAAAATCCTTTAAATTGAGAAAAATGGTCAAA
AATTAACGCGGCTTTTAGGTAAAAATTGCAAATTTTTGGCCCTTTTTACG
CCGGCTCTTTTAACACCAGCCCTTATTACGCCACGAGCCCAAAAATAACG
CTGATAAGGGCCGGCGTAAAAAGTGCTGAAAAAGGTAGTCCTCCGATTTT
TATAACGTCTTTTCAAAATCAAAAACTTTATGCAACTAAAGCTTCATAGC
TAGGTATATAATATGATGATTTTCGCAAGGAAATTACCCCCTCATTAAAA
ACTCCCAAAAACAAATTCACTGGAATTATAAAAATCACTTGCTGATACTC
AATTCCTTTTTTTTTTCTTACAGCTCAAAAGTCTGTCAGAGCTAGTACAG
TTTAGGCAAAGTTTGTATGTTACTGACAAAATAAAACTGACAGAATGCGC
TTTGGATGTAGTGGATGATATTAAACTTTTTGCTCAGAATTTCATACTCT
CTTTGATGTTTCTTTCTCTGATGGTATCAATAAGCTATATAAGTGTTACC
TCAGCCTTTCTAACATATAATATAAACAACCCCTTCTCACAGACCCACTG
GGACCCCTTCCCACTGGGAACACATATAATAATTCCTTTAGGTGAACGCG
ATGGTATACTCTTAGGTGCCAAATAAACGCCCCCCCCCCGCTTGTTAATT
TTTCGATCTTTTTCCAACCCCCCGGACCTTATTAAGACCCCCCGTTTATT
AATTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTTGTTTTACT
CTAAAAAGCCTAAATTTAGTCTATTTTGACCCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT
CCCCCCCCCCCCCCCCGTTTATTCGAACCCCACCTAAGCACCTAAGAGTA
TTGCATAACAAATTAATATTGCTTAAATTATGCTACCTCCATACTTTAAT
AAATTAATAAATGCAAATAAAACTAGCAGGAAATTAGATCTTACCTATAA
ATAAGTTTGTGTCTTTTTTACAGCATCTTCGTCGTCATTTGCTCCAACAA
AAAGAAAAGTTACTTGCGGAAAAGTTGTACTGGGAGCACGAATGTAGAAA
AAGCTACGACCTGTATGAGGTAATGATTTCTTTTTTTTGTTCTGATCATC
ATCATCAAGATATAAAATTCGGATTAAGTCCAAAAATATACCCGGTGCGT
TTATTCGAAGTGCTTCAGTTCACAAANTTTCTATCATAATGGATTGGATG
AGTCAACTGATTGGCAATGGAAAGATCCAATTAGCTGCTTTGAAAACAGT
CCACTTTAAAACTGTGTATACATATTTGTGTCAATCCAATCAGGTTCTAG
GCCATAGACCACCATCAAAGGACTATGATCGACTTCTAAAGGCTTTATCT
AACCAGTTATTTTCGCTACAATTTTCAGACACAGAGGAAGAAGAATGATC
TTGAATTTACAAAAAGATTAAGTGGGAATAAGGTAACAATTGTTTTATTA
TGAAAATCATTTGGGGTTAAAATTTGAAATCTTTATATCCCTATTTTCAA
ATTATTTGCGAAATATTATCAAGTACGTGAAACGTGAAACCATTTTTCTA
ATAGGGGTATTAAAGTGTCAAAAAGATGTGCCGTGTTTCTATCTTTACCC
ATAACTTTCCAAGGTTGATATCGTTGGAAAGATATTTAAATGCGCTGAAT
TTTCCACTCATTTGTTTTTCAAAATTTGTTCAAGAAAGTGAAACAAAGTG
AAAAAGAAAAAAACTTCTTGTAGAATAACACCCCTCGGTTTGATTGATAA
ATCGGAATATGATTTATTATAAAATAATTTATTCTCATTTATCACTGTGA
TTTCAGCAGCACAAACGGTTATTGGTGCCATGCCAATGTGGCAAAGCGCA
TGAGTACCTTTACCAGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024816	XLOC_024816	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00040735-exon-sc0002542-1575043694:7228..7289	TCONS_00040735-exon-sc0002542-1575043694:7228..7289	Clytia hemisphaerica	exon
TCONS_00040735-exon-sc0002542-1575043694:821..916	TCONS_00040735-exon-sc0002542-1575043694:821..916	Clytia hemisphaerica	exon
TCONS_00040735-exon-sc0002542-1575043694:458..511	TCONS_00040735-exon-sc0002542-1575043694:458..511	Clytia hemisphaerica	exon
TCONS_00040735-exon-sc0002542-1575043694:22..80	TCONS_00040735-exon-sc0002542-1575043694:22..80	Clytia hemisphaerica	exon
TCONS_00040735-exon-sc0002542-1510915933:7228..7289	TCONS_00040735-exon-sc0002542-1510915933:7228..7289	Clytia hemisphaerica	exon
TCONS_00040735-exon-sc0002542-1510915933:821..916	TCONS_00040735-exon-sc0002542-1510915933:821..916	Clytia hemisphaerica	exon
TCONS_00040735-exon-sc0002542-1510915933:458..511	TCONS_00040735-exon-sc0002542-1510915933:458..511	Clytia hemisphaerica	exon
TCONS_00040735-exon-sc0002542-1510915933:22..80	TCONS_00040735-exon-sc0002542-1510915933:22..80	Clytia hemisphaerica	exon
TCONS_00040735-exon-sc0002542-1491911889:7228..7289	TCONS_00040735-exon-sc0002542-1491911889:7228..7289	Clytia hemisphaerica	exon
TCONS_00040735-exon-sc0002542-1491911889:821..916	TCONS_00040735-exon-sc0002542-1491911889:821..916	Clytia hemisphaerica	exon
TCONS_00040735-exon-sc0002542-1491911889:458..511	TCONS_00040735-exon-sc0002542-1491911889:458..511	Clytia hemisphaerica	exon
TCONS_00040735-exon-sc0002542-1491911889:22..80	TCONS_00040735-exon-sc0002542-1491911889:22..80	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002542	supercontig	sc0002542:22..7289 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.27195	0	0	0	0.901551	0	0	0	0	0	0	0	0	0	0	0	2.47235	0	1.18795	0	0	0	0	0	1.47724	1.24998	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00040735 vs. Swiss-Prot (Human)

BLAST of TCONS_00040735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00040735 (transcript) - C. hemisphaerica