TCONS_00040728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040728
Unique NameTCONS_00040728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040728 ID=TCONS_00040728|Name=TCONS_00040728|organism=Clytia hemisphaerica|type=transcript|length=1058bp
ccccccgcttgttaatttttcgaaaattttccaacccccccggaccttat
taggaccccccgtttattaatctctaagaatattacaaaaaaacaaattt
taagttGCAAATCTTCAAATGATGGGTGAACCATCTAATGATACAGACAA
TGGATTCAATATTGATGATAACAATTCTTTATGGGAAGAAATCGATAACC
AGACAAATACAGCGTTGGGAAACATTATCATGTGCGGCGAGGCGTGTCAA
TTTTTGTTTAGTGTAGACACTGTATTAAGATCTTCCTTGGAATCTGGCAT
CACTGGGCATTCAAGCCTCTTCTCAACTGAAGAAACTCTCCTTGACATTG
CCAGCAGTGGTGAGGCAGAGGGTATCTTCTTTTGTGCGACATTCCGGCTC
TTACAAGAAAACATCTCCATCGTTCGATTCTTTGAGCATGGTTGTTACAA
AGGTGCTATGAAAAGttcGATGCAAGAGACCATTAACAGTATGATTGAAG
ACGAAAACTCGCATTACATTGAAGTTTTCAATGATTATGACGTGGAGAAC
AAATTGAAGCGGGAATCTCtactcaaaaagaagaaaggaCCCGCGAAAAC
AAAACGATCCAATTTTCATCGAAAGTTATTGGAAAGTAAGGAGAGTGTTG
GCTTGAACTTGCCGTTCATCGCTAAAGAACTGAATGTTAGTGGTCAAATT
AAATGCACAGGCATCATTGCTAGAGTCGAACGAAATAATGCTAAAAATGA
TAAAGACAATTTGACGTTTGATTATTCTTCACTATGACGACATGACGATT
TTGACAGTTGACGTTTACAATTATTTCACGGTAAGCATAAGACTTGACTC
GTACATCCAAGAGTTTCTGGGTTATTTGACTGAAATATACGATGCTGTTC
TATGAGAGATAAAGATGGAGATGAAAAGACAGGGAAACTTTGAAGTACTT
TTTGAAACTCTGTTTTAAAATGCATGTGCTAAACATTTGCTAAACTCGAT
TTTCCTCCGAAATGGTACATAATAACAAAATAGAAACTGCCAAAATTTGT
TTTCTGAC
Run BLAST on NCBI

transcript from alignment at sc0002540:11494..14755+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040728 ID=TCONS_00040728|Name=TCONS_00040728|organism=Clytia hemisphaerica|type=transcript|length=3262bp|location=Sequence derived from alignment at sc0002540:11494..14755+ (Clytia hemisphaerica)
ccccccgcttgttaatttttcgaaaattttccaacccccccggaccttat
taggaccccccgtttattaatctctaagaatattacaaaaaaacaaattt
taagttGCAAATCTTCAAATGATGGGTGAACCATCTAATGATACAGACAA
TGGATTCAATATTGATGATAACAATTCTTTATGGGAAGGTATACGTTACC
TAgctttagtttttattttcataaatttatcATTGATCCTCCCCCCCCTT
TAATTTAAGggggacttgaaattttgagataaaCTTCAAGAGGTAataac
ttcaaaacttttgaaataagtCACAAGGGTGGTCAGCTTTCTTTAATTAC
TAGTACTTACTTTATTGGATATCTCAGCTGACGATCTAAtaaagactgtt
taacaattgacgtTATACCTTCTTTCTTATTGTTCAACCTCATGCCTTGT
GAGACTATTCATTAAAGTTCTTTAATTGTATTTTCAGAAATCGATAACCA
GACAAATACAGCGTTGGGAAACATTATCATGTGCGGCGAGGCGTGTCAAT
TTTTGTTTAGTGTAGACACTGTATTAAGATCTTCCTTGGAATCTGGCATC
ACTGGGCATTCAAGCCTCTTCTCAACTGAAGAAACTCTCCTTGACATTGC
CAGCAGTGGTGAGGCAGAGGGTATCTTCTTTTGTGCGACATTCCGGCTCT
TACAAGAAAACATCTCCATCGTTCGATTCTTTGAGCATGGTTGTTACAAA
GGTGCTATGAAAAGGTTAAATGCATAATACATTTTTTGTGTAAATTGTTG
TCCTCATTGCATACATATTCTGCTTTTTATCTTTATTCACAAGTTAAAGA
ATTACATTTCGTTTATTGTGCGAGCCTTGCAGATTTCTTTGTCGAATCGA
ATCTTACTTATTATTGTTATGATCTGTAAGTGGCTACATCCTAAGAACTT
TACCGTCTATGACCtctcattttttaatttttcagttcGATGCAAGAGAC
CATTAACAGTATGATTGAAGACGAAAACTCGCATTACATTGAAGTTTTCA
ATGATTATGACGTGGAGAACAAATTGAAGCGGGAATCTCtactcaaaaag
aagaaaggtaAAAAGTCAAGACCATATCCTTCTCTCccttgaaaaatttg
attaagtAGAAAAAGTCTGCCAATACTTTTCAGCAAATAAAGTAAACTAT
TTCAATGTTTTCTGTctttttcacgatttttaggaCCCGCGAAAACAAAA
CGATCCAATTTTCATCGAAAGTTATTGGAAAGTAAGGAGAGTGTTGGCTT
GAACTTGCCGTTCATCGCTAAAGAACTGAATGTTAGTGGTCAAATTAAAT
GCACAGGCATCATTGCTAGAGTCGAACGAAATAATGCTAAAAATGATAAA
GACAAGTAAGTAAAGTTTCCAGACGTTTCCTTTGACTAAAATGACAGAGA
CATAACAACTTTGACGAACTTTAGATNGTTATTAAGTTATTAAGTTATTT
TAACACAATTATGCGATTTCATTGAAAGGAATTCACTTTACCGTCCAAAT
CAATCTGGATTTCGGAAAGGGCACACCACAACAACGCTACTCTTAAAACT
ACGTGATGATATAATCAAAGCTatgaataaaagtgaaattacaCTATCAA
TTCTTATCGACTACTCCAAGGCATTCGATACGATCGACCATTTTANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTAgtgctttttattttgatatttatg
tTTAGGGGGAAGAACAATTTTGTATGAAATTGAACCTaataaatgataat
aataataataataataataattaaatgTACAGGCATCATTGCTAGAGTCG
AACGAAATAATGCTAAAAATGATAAAGACAAGTAAGTAAAGTTTCCAGAC
GTTTCCTTTGACTAAAATGACAGAGACATAACAACTTTGACGAACTTTAG
ATGTTCACGATacgtaattttattttatttaatttaatttaatcttaTAG
CAAGCCCTTAGTCTTTTTGTAGATGGTGACTTTCTTTCTTCGGCACTGAT
GATGTTTTTAAATTACTTTACATAAATCTTAATATAGTTTGACGTTTGAT
TATTCTTCACTATGACGACATGACGATTTTGACAGTTGACGTTTACAATT
ATTTCACGGTAAGCATAAGACTTGACTCGTACATCCAAGAGTTTCTGGGT
TATTTGACTGAAATATACGATGCTGTTCTATGAGAGATAAAGATGGAGAT
GAAAAGACAGGGAAACTTTGAAGTACTTTTTGAAACTCTGTTTTAAAATG
CATGTGCTAAACATTTGCTAAACTCGATTTTCCTCCGAAATGGTACATAA
NCTTTTTAAAACTCTGTTTTAAAATGGATGTGCTAAACATTTGCTAAACT
CGATTTTCCTCCGGAATGGTACATAATAACAAAATAGAAACTGCCAAAAT
TTGTTTTCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024812XLOC_024812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040728-exon-sc0002540-1491911889:11494..11681TCONS_00040728-exon-sc0002540-1491911889:11494..11681Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1510915933:11494..11681TCONS_00040728-exon-sc0002540-1510915933:11494..11681Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1575043694:11494..11681TCONS_00040728-exon-sc0002540-1575043694:11494..11681Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1491911889:11981..12257TCONS_00040728-exon-sc0002540-1491911889:11981..12257Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1510915933:11981..12257TCONS_00040728-exon-sc0002540-1510915933:11981..12257Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1575043694:11981..12257TCONS_00040728-exon-sc0002540-1575043694:11981..12257Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1491911889:12479..12600TCONS_00040728-exon-sc0002540-1491911889:12479..12600Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1510915933:12479..12600TCONS_00040728-exon-sc0002540-1510915933:12479..12600Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1575043694:12479..12600TCONS_00040728-exon-sc0002540-1575043694:12479..12600Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1491911889:12727..12898TCONS_00040728-exon-sc0002540-1491911889:12727..12898Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1510915933:12727..12898TCONS_00040728-exon-sc0002540-1510915933:12727..12898Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1575043694:12727..12898TCONS_00040728-exon-sc0002540-1575043694:12727..12898Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1491911889:14381..14639TCONS_00040728-exon-sc0002540-1491911889:14381..14639Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1510915933:14381..14639TCONS_00040728-exon-sc0002540-1510915933:14381..14639Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1575043694:14381..14639TCONS_00040728-exon-sc0002540-1575043694:14381..14639Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1491911889:14716..14755TCONS_00040728-exon-sc0002540-1491911889:14716..14755Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1510915933:14716..14755TCONS_00040728-exon-sc0002540-1510915933:14716..14755Clytia hemisphaericaexon
TCONS_00040728-exon-sc0002540-1575043694:14716..14755TCONS_00040728-exon-sc0002540-1575043694:14716..14755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002540supercontigsc0002540:11494..14755 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.53653	3.10652	5.62953	6.68356	0	0	0	0	0	0	0	2.60931e-10	1.07993	0	0.00886341	1.81193e-06	0	1.06902	0	0	2.45926	2.39861	2.15335	0.646405	0	3.18918
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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