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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040727 ID=TCONS_00040727|Name=TCONS_00040727|organism=Clytia hemisphaerica|type=transcript|length=1051bp
ggcccccccgcttgttaatttttcgaaaattttccaacccccccggacct
tattaggaccccccgtttattaatctctaagaatattacaaaaaaacaaa
ttttaagttGCAAATCTTCAAATGATGGGTGAACCATCTAATGATACAGA
CAATGGATTCAATATTGATGATAACAATTCTTTATGGGAAGAAATCGATA
ACCAGACAAATACAGCGTTGGGAAACATTATCATGTGCGGCGAGGCGTGT
CAATTTTTGTTTAGTGTAGACACTGTATTAAGATCTTCCTTGGAATCTGG
CATCACTGGGCATTCAAGCCTCTTCTCAACTGAAGAAACTCTCCTTGACA
TTGCCAGCAGTGGTGAGGCAGAGGGTATCTTCTTTTGTGCGACATTCCGG
CTCTTACAAGAAAACATCTCCATCGTTCGATTCTTTGAGCATGGTTGTTA
CAAAGGTGCTATGAAAAGttcGATGCAAGAGACCATTAACAGTATGATTG
AAGACGAAAACTCGCATTACATTGAAGTTTTCAATGATTATGACGTGGAG
AACAAATTGAAGCGGGAATCTCtactcaaaaagaagaaaggaCCCGCGAA
AACAAAACGATCCAATTTTCATCGAAAGTTATTGGAAAGTAAGGAGAGTG
TTGGCTTGAACTTGCCGTTCATCGCTAAAGAACTGAATGTTAGTGGTCAA
ATTAAATGCACAGGCATCATTGCTAGAGTCGAACGAAATAATGCTAAAAA
TGATAAAGACAAGTAAGTAAAGTTTCCAGACGTTTCCTTTGACTAAAATG
ACAGAGACATAACAACTTTGACGAACTTTAGATNGTTATTAAGTTATTAA
GTTATTTTAACACAATTATGCGATTTCATTGAAAGGAATTCACTTTACCG
TCCAAATCAATCTGGATTTCGGAAAGGGCACACCACAACAACGCTACTCT
TAAAACTACGTGATGATATAATCAAAGCTatgaataaaagtgaaattaca
CTATCAATTCTTATCGACTACTCCAAGGCATTCGATACGATCGACCATTT
T Run BLAST on NCBI transcript from alignment at sc0002540:11491..13187+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040727 ID=TCONS_00040727|Name=TCONS_00040727|organism=Clytia hemisphaerica|type=transcript|length=1697bp|location=Sequence derived from alignment at sc0002540:11491..13187+ (Clytia hemisphaerica)
ggcccccccgcttgttaatttttcgaaaattttccaacccccccggacct
tattaggaccccccgtttattaatctctaagaatattacaaaaaaacaaa
ttttaagttGCAAATCTTCAAATGATGGGTGAACCATCTAATGATACAGA
CAATGGATTCAATATTGATGATAACAATTCTTTATGGGAAGGTATACGTT
ACCTAgctttagtttttattttcataaatttatcATTGATCCTCCCCCCC
CTTTAATTTAAGggggacttgaaattttgagataaaCTTCAAGAGGTAat
aacttcaaaacttttgaaataagtCACAAGGGTGGTCAGCTTTCTTTAAT
TACTAGTACTTACTTTATTGGATATCTCAGCTGACGATCTAAtaaagact
gtttaacaattgacgtTATACCTTCTTTCTTATTGTTCAACCTCATGCCT
TGTGAGACTATTCATTAAAGTTCTTTAATTGTATTTTCAGAAATCGATAA
CCAGACAAATACAGCGTTGGGAAACATTATCATGTGCGGCGAGGCGTGTC
AATTTTTGTTTAGTGTAGACACTGTATTAAGATCTTCCTTGGAATCTGGC
ATCACTGGGCATTCAAGCCTCTTCTCAACTGAAGAAACTCTCCTTGACAT
TGCCAGCAGTGGTGAGGCAGAGGGTATCTTCTTTTGTGCGACATTCCGGC
TCTTACAAGAAAACATCTCCATCGTTCGATTCTTTGAGCATGGTTGTTAC
AAAGGTGCTATGAAAAGGTTAAATGCATAATACATTTTTTGTGTAAATTG
TTGTCCTCATTGCATACATATTCTGCTTTTTATCTTTATTCACAAGTTAA
AGAATTACATTTCGTTTATTGTGCGAGCCTTGCAGATTTCTTTGTCGAAT
CGAATCTTACTTATTATTGTTATGATCTGTAAGTGGCTACATCCTAAGAA
CTTTACCGTCTATGACCtctcattttttaatttttcagttcGATGCAAGA
GACCATTAACAGTATGATTGAAGACGAAAACTCGCATTACATTGAAGTTT
TCAATGATTATGACGTGGAGAACAAATTGAAGCGGGAATCTCtactcaaa
aagaagaaaggtaAAAAGTCAAGACCATATCCTTCTCTCccttgaaaaat
ttgattaagtAGAAAAAGTCTGCCAATACTTTTCAGCAAATAAAGTAAAC
TATTTCAATGTTTTCTGTctttttcacgatttttaggaCCCGCGAAAACA
AAACGATCCAATTTTCATCGAAAGTTATTGGAAAGTAAGGAGAGTGTTGG
CTTGAACTTGCCGTTCATCGCTAAAGAACTGAATGTTAGTGGTCAAATTA
AATGCACAGGCATCATTGCTAGAGTCGAACGAAATAATGCTAAAAATGAT
AAAGACAAGTAAGTAAAGTTTCCAGACGTTTCCTTTGACTAAAATGACAG
AGACATAACAACTTTGACGAACTTTAGATNGTTATTAAGTTATTAAGTTA
TTTTAACACAATTATGCGATTTCATTGAAAGGAATTCACTTTACCGTCCA
AATCAATCTGGATTTCGGAAAGGGCACACCACAACAACGCTACTCTTAAA
ACTACGTGATGATATAATCAAAGCTatgaataaaagtgaaattacaCTAT
CAATTCTTATCGACTACTCCAAGGCATTCGATACGATCGACCATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040727-exon-sc0002540-1491911889:11491..11681 | TCONS_00040727-exon-sc0002540-1491911889:11491..11681 | Clytia hemisphaerica | exon |
| TCONS_00040727-exon-sc0002540-1510915933:11491..11681 | TCONS_00040727-exon-sc0002540-1510915933:11491..11681 | Clytia hemisphaerica | exon |
| TCONS_00040727-exon-sc0002540-1575043694:11491..11681 | TCONS_00040727-exon-sc0002540-1575043694:11491..11681 | Clytia hemisphaerica | exon |
| TCONS_00040727-exon-sc0002540-1491911889:11981..12257 | TCONS_00040727-exon-sc0002540-1491911889:11981..12257 | Clytia hemisphaerica | exon |
| TCONS_00040727-exon-sc0002540-1510915933:11981..12257 | TCONS_00040727-exon-sc0002540-1510915933:11981..12257 | Clytia hemisphaerica | exon |
| TCONS_00040727-exon-sc0002540-1575043694:11981..12257 | TCONS_00040727-exon-sc0002540-1575043694:11981..12257 | Clytia hemisphaerica | exon |
| TCONS_00040727-exon-sc0002540-1491911889:12479..12600 | TCONS_00040727-exon-sc0002540-1491911889:12479..12600 | Clytia hemisphaerica | exon |
| TCONS_00040727-exon-sc0002540-1510915933:12479..12600 | TCONS_00040727-exon-sc0002540-1510915933:12479..12600 | Clytia hemisphaerica | exon |
| TCONS_00040727-exon-sc0002540-1575043694:12479..12600 | TCONS_00040727-exon-sc0002540-1575043694:12479..12600 | Clytia hemisphaerica | exon |
| TCONS_00040727-exon-sc0002540-1491911889:12727..13187 | TCONS_00040727-exon-sc0002540-1491911889:12727..13187 | Clytia hemisphaerica | exon |
| TCONS_00040727-exon-sc0002540-1510915933:12727..13187 | TCONS_00040727-exon-sc0002540-1510915933:12727..13187 | Clytia hemisphaerica | exon |
| TCONS_00040727-exon-sc0002540-1575043694:12727..13187 | TCONS_00040727-exon-sc0002540-1575043694:12727..13187 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002540 | supercontig | sc0002540:11491..13187 + |
Blast
The following BLAST results are available for this feature:
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