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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040722 ID=TCONS_00040722|Name=TCONS_00040722|organism=Clytia hemisphaerica|type=transcript|length=801bp
TACACAGACCAACCAATATGTATTCCTTGACTACAACTGCTGGTTACTTC
GTATCAAAGAAATTCGCTAATTTGAATCGAACTGCATTGAAAAATCGTTA
CATACCTTCACGCCATAACGCCCATAAGGGGCGGAAACTACGTATCAATG
TCAGTGGTTCGGAATTCCGGATTAATGAAGCCATCTTAGAGGCTTTCCCT
GAAACGTTGCTTGGCAACCCGCTCAAACGAGGCTATTATTACGATACGGT
GGATCAAGAATTCTTTTTCGATCGTGAtccatttttattcaaattcatcT
TCAAATATTATAAAACGGGGAAACTACATTATCCCGAAACGGAATGTTAC
GAAGCATTTATGGATGaattaaatttctttcaaattaatTTAACGGAGAT
TGCACCTTGCTGCCGTGAAGCATTTGCAATTTATCTAATCAACAAAGTCG
AAGAAAATGTCAGAAGTCCTATAGCTCGGAATCGTCCAGCTCAAATCTTG
ATCTCGTCAATCAGTAATAGCTCTGCAAACAAGAAGAAGAAAGTACAGNA
GAAATCGTCCAGCTCAAATCTTGATCTCGTCAATCAGTAATAGCTCTGCA
AACAAGAAGAAAGTACAGTACAATCATCTCCGTAAACTATTATGGGATTT
CGCCGAAGATCCACAATCATCCTATCCAGCCTTGGTGTTTTATTTTCTCA
GTTGTGCTATAATTATCCTCTCCATCATCGTGAATTGTGTGGAGACCGTC
AACTGTCCGACTGATTATTGTATACCAGTGTCTGGAAATCTTGGCGCAAA
C Run BLAST on NCBI protein sequence of TCONS_00040722-protein >TCONS_00040722-protein ID=TCONS_00040722-protein|Name=TCONS_00040722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
HRPTNMYSLTTTAGYFVSKKFANLNRTALKNRYIPSRHNAHKGRKLRINV
SGSEFRINEAILEAFPETLLGNPLKRGYYYDTVDQEFFFDRDPFLFKFIF
KYYKTGKLHYPETECYEAFMDELNFFQINLTEIAPCCREAFAIYLINKVE
ENVRSPIARNRPAQILISSISNSSANKKKKVQXKSSSSNLDLVNQ Run BLAST on NCBI transcript from alignment at sc0002537:176..976 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040722 ID=TCONS_00040722|Name=TCONS_00040722|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at sc0002537:176..976 (Clytia hemisphaerica)
GTTTGCGCCAAGATTTCCAGACACTGGTATACAATAATCAGTCGGACAGT
TGACGGTCTCCACACAATTCACGATGATGGAGAGGATAATTATAGCACAA
CTGAGAAAATAAAACACCAAGGCTGGATAGGATGATTGTGGATCTTCGGC
GAAATCCCATAATAGTTTACGGAGATGATTGTACTGTACTTTCTTCTTGT
TTGCAGAGCTATTACTGATTGACGAGATCAAGATTTGAGCTGGACGATTT
CTNCTGTACTTTCTTCTTCTTGTTTGCAGAGCTATTACTGATTGACGAGA
TCAAGATTTGAGCTGGACGATTCCGAGCTATAGGACTTCTGACATTTTCT
TCGACTTTGTTGATTAGATAAATTGCAAATGCTTCACGGCAGCAAGGTGC
AATCTCCGTTAAattaatttgaaagaaatttaattCATCCATAAATGCTT
CGTAACATTCCGTTTCGGGATAATGTAGTTTCCCCGTTTTATAATATTTG
AAgatgaatttgaataaaaatggaTCACGATCGAAAAAGAATTCTTGATC
CACCGTATCGTAATAATAGCCTCGTTTGAGCGGGTTGCCAAGCAACGTTT
CAGGGAAAGCCTCTAAGATGGCTTCATTAATCCGGAATTCCGAACCACTG
ACATTGATACGTAGTTTCCGCCCCTTATGGGCGTTATGGCGTGAAGGTAT
GTAACGATTTTTCAATGCAGTTCGATTCAAATTAGCGAATTTCTTTGATA
CGAAGTAACCAGCAGTTGTAGTCAAGGAATACATATTGGTTGGTCTGTGT
A Coding sequence (CDS) from alignment at sc0002537:176..976 >TCONS_00040722 ID=TCONS_00040722|Name=TCONS_00040722|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0002537:176..976 (Clytia hemisphaerica)
TTACTGATTGACGAGATCAAGATTTGAGCTGGACGATTTCTNCTGTACTT
TCTTCTTCTTGTTTGCAGAGCTATTACTGATTGACGAGATCAAGATTTGA
GCTGGACGATTCCGAGCTATAGGACTTCTGACATTTTCTTCGACTTTGTT
GATTAGATAAATTGCAAATGCTTCACGGCAGCAAGGTGCAATCTCCGTTA
AattaatttgaaagaaatttaattCATCCATAAATGCTTCGTAACATTCC
GTTTCGGGATAATGTAGTTTCCCCGTTTTATAATATTTGAAgatgaattt
gaataaaaatggaTCACGATCGAAAAAGAATTCTTGATCCACCGTATCGT
AATAATAGCCTCGTTTGAGCGGGTTGCCAAGCAACGTTTCAGGGAAAGCC
TCTAAGATGGCTTCATTAATCCGGAATTCCGAACCACTGACATTGATACG
TAGTTTCCGCCCCTTATGGGCGTTATGGCGTGAAGGTATGTAACGATTTT
TCAATGCAGTTCGATTCAAATTAGCGAATTTCTTTGATACGAAGTAACCA
GCAGTTGTAGTCAAGGAATACATATTGGTTGGTCTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040722-exon-sc0002537-1491911889:176..976 | TCONS_00040722-exon-sc0002537-1491911889:176..976 | Clytia hemisphaerica | exon |
| TCONS_00040722-exon-sc0002537-1510915933:176..976 | TCONS_00040722-exon-sc0002537-1510915933:176..976 | Clytia hemisphaerica | exon |
| TCONS_00040722-exon-sc0002537-1575043694:176..976 | TCONS_00040722-exon-sc0002537-1575043694:176..976 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002537 | supercontig | sc0002537:176..976 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0051260 | protein homooligomerization |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005515 | protein binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0051260 |
protein homooligomerization |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
The following BLAST results are available for this feature:
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