TCONS_00040722-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00040722-protein
Unique NameTCONS_00040722-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length195

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00040722-protein ID=TCONS_00040722-protein|Name=TCONS_00040722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
HRPTNMYSLTTTAGYFVSKKFANLNRTALKNRYIPSRHNAHKGRKLRINV
SGSEFRINEAILEAFPETLLGNPLKRGYYYDTVDQEFFFDRDPFLFKFIF
KYYKTGKLHYPETECYEAFMDELNFFQINLTEIAPCCREAFAIYLINKVE
ENVRSPIARNRPAQILISSISNSSANKKKKVQXKSSSSNLDLVNQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_024807XLOC_024807Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00040722TCONS_00040722Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003974K_chnl_volt-dep_Kv3
IPR000210BTB/POZ_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003974Potassium channel, voltage dependent, Kv3PRINTSPR01498SHAWCHANNELcoord: 87..100
score: 50.79
coord: 102..117
score: 58.33
coord: 120..141
score: 31.31
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 44..145
e-value: 1.5E-8
score: 44.4
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 46..136
e-value: 1.7E-23
score: 82.7
NoneNo IPR availableGENE3D3.30.710.10coord: 43..143
e-value: 1.1E-22
score: 79.6
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 45..146

Blast
[Close]
BLAST of TCONS_00040722-protein vs. Swiss-Prot (Human)
Match: KCND2 (Potassium voltage-gated channel subfamily D member 2 OS=Homo sapiens GN=KCND2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.105e-22
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 0 
Query:   48 INVSGSEFRINEAILEAFPETLLGNPLKRGYYYDTVDQEFFFDRDPFLFKFIFKYYKTGKLHYPETECYEAFMDELNFFQINLTEIAPCCREAF 141
            +NVSG+ F+  +  LE +P+TLLG+  +R ++Y    Q++FFDRDP +F+ I  +Y+TGKLHYP  EC  A+ +EL FF +    I  CC E +
Sbjct:   45 LNVSGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEY 137
The following BLAST results are available for this feature:
BLAST of TCONS_00040722-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCND23.105e-2244.68Potassium voltage-gated channel subfamily D member... [more]
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