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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040716 ID=TCONS_00040716|Name=TCONS_00040716|organism=Clytia hemisphaerica|type=transcript|length=767bp
TGAATGGGTGATCGCTTTGGACAGAATCATCAACCAGCCATTACCATCAA
AATCATCTATGGCGCCACCGGGCCAACCGCCACCATATACGTCAAGAATG
GAGTATGAACAAAATATCAATGCTGACCCTCCTAATAATAGCAGCTCTCG
GAATCAAACAACTAACACAGGAGGGCTGCTCACCAAAACACTCAGCCTCC
CCCACCTCAGATGGGACAACCCCGTCCACAGATGGGACAACCTCAACCTA
TGATGTATCCACAACAACCACCAATGTATGGCCAGCAACCCATGTATGGT
TATGGTCAACAACCCATGTATGGTCCCCCTATGTATGGGCAACCCATGTA
CCAACAGCCTGTCTATGTTCAACAGGCTCCCCAGCAGCAGCAGTCAAGAG
GTGGCAGCAATACAGattttgtagTTTTAAAATTAACAACTTCAAACTCC
TAGCCAATTTAAAGCTCCAAAGGgatagaaagaaagaagaagaagaagaa
gaagaagcctTTCTTTTTTGCCGTGTGAAAATTATAGAtccaaaatttga
ctttttgataGATTCTTTACTCTTTTGAacttgtaataagaaattttaaa
gctttaaaatttcttattacaagtTCAAAAGAGTAAAGAATCtatcaaaa
agtcaaattttggaTCTATAATTTTCACACGGCAAAAAAGAAAGGCTTCT
TTAGTCATCCCTTTGGAGCTTTAAATTGGCTAGGAGTTTGAAGTTGTTAA
TTTTAAAActacaaaat Run BLAST on NCBI protein sequence of TCONS_00040716-protein >TCONS_00040716-protein ID=TCONS_00040716-protein|Name=TCONS_00040716-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MNKISMLTLLIIAALGIKQLTQEGCSPKHSASPTSDGTTPSTDGTTSTYD
VSTTTTNVWPATHVWLWSTTHVWSPYVWATHVPTACLCSTGSPAAAVKRW
QQYRFCSFKINNFKLLANLKLQRDRKKEEEEEEEAFLFCRVKIIDPKFDF
LIDSLLF Run BLAST on NCBI transcript from alignment at sc0002537:14955..18662+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040716 ID=TCONS_00040716|Name=TCONS_00040716|organism=Clytia hemisphaerica|type=transcript|length=3708bp|location=Sequence derived from alignment at sc0002537:14955..18662+ (Clytia hemisphaerica)
TGAATGGGTGATCGCTTTGGACAGAATCATCAACCAGGTAATTTCAAAAt
gtctgttgtttttttttctgaaatatcGATTTTTTCATTTCGTTATAAGT
TACAAGAGAAATTGGGATGGGTTtagaaaactaaaaaagttttttttttg
ggaaaaagacGTTTCAATATAATACAGTACACTCTCGTTAATTAGAACTT
CTATtaatcgaatctttctataattcgaactaattcacAGCTCCCGTCAA
AGGGAAACCCTTGTAAAGtactctctataattcaaatctttctttaattt
gacGAAAACTTTTGGTCCCTTGGAGATCGTATTACAGAGAGTCAACTTTA
AGTCAAAAagctttttcaactttttccatGAATAAGTTTCTAAGGATGGA
CTTTAGACTGAGATGTAGTGGTGGGAAAGGTCAATGAagtaaaagcccga
agggctagaagcggaTCTCCTACGTAGGATTTGAGGCTACTAAATCCTCC
ttaagttgcgcggccttgagcagTCCGcatggaaaattatttttatacaa
attccagattgaaagtaaagtaaTTTTCcgctagattaaaaaaaatgtat
cactcgaaaacaaagaaaccgctaAAATCAATCCGTTATAAAAAATACGG
CGTATAttctaaggcttcactttttcctgCACGAGGAAGGTTAAacattc
gcttctagcccttcgggcgtttactttttttggtaaaagtcaCTCTTTCT
ATTCAATTTGTATTCTTCATTGTAGCCATTACCATCAAAATCATCTATGG
CGCCACCGGGCCAACCGCCACCATATACGTCAAGAATGGAGTATGAACAA
AATATCAATGCTGACCCTCCTAATAGTAAGTTGGAATATTATTAACAAAa
ggttcaaaaataaaatattttctcaataTACAAAAactctgaaaaaactt
tattAGCTGCTTAATAAGGGAAAGGTAGCTCCTGCGAGCCTAATAATATa
tgaaaggttttgttttgaaataagagtgatatcgttttcCTACTCGTcag
ttttaatttacaagctttttgatattgaattgatacggatgtggagcaag
attggtcagaaagaggaaaagaaaaatattatttgcttatatcagcacaa
tataacaataggtagacgctgtcctgatatgaaacatgtttCTCTTatga
acacttatgtaaaaataaaactttaagtATACCCCCATATAACAGGGCCC
ACGCCACCGGGGGGGGGGGCAAAAAGTAAAATTTTTGGTTGCGCCTCCTT
AGACTCTATATTCATTGCCCCCCCCTCCACTTTCAATTTTATGGAGATGC
GTGGACCTTCTATAACAATAGGATAAGAAAACATTCAATTACTCACGACA
CAAATAAAATGAAAGGGTATCAATAAACGGGAACAAAGTTTGTTTGGCAT
TGATTCGTTGATATTTGACTCCAGTTTAATTATTTAATTGCAGATAGCAG
CTCTCGGAATCAAACAACTAACACAGGAGGGCTGCTCACCAAAACACTCA
GCCTCCCCCACCTCAGATGGGACAACCCCGTCCACAGATGGGACAACCTC
AACCTATGATGTATCCACAACAACCACCAATGTATGGCCAGCAACCCATG
TATGGTTATGGTCAACAACCCATGTATGGTCCCCCTATGTATGGGCAACC
CATGTACCAACAGCCTGTCTATGTTCAACAGGCTCCCCAGCAGCAGCAGT
CAAGAGGTGGCAGCAATACAGGTAGTCTGCTTCTAGCAGGAGGTGGTGGG
TTACTAGGAGGCTATCTTCTGGGTAGTGCCATGTCTGAGATGAGTCACCA
TCATGGACATAATGACTATGGTGGACATGATCATGGTGGGTTTGGGGGCG
GAGATTTTGATGGTGGAGGTGGATTTGATTTCTAATTTCCTTTATCCTTC
TTATAAATTCGTTGATACTTGTTGAGACCATAGTGTCCTAGTAGGTTGGT
TCCCCTCCCTTGAAAATTGAAAAAAATTCTTCTGCCCCCCCTCCTTTTAG
TTCCCCTCCCTAAGGTTTTTAAAATAATCCCCCCTTGAAATTTTTTTTAG
ATTTTTTGCCCATAACGTATAATACTGCTTCTATTCATGTTATCTCGTCC
CCTATATACAAAGAAAAAATGTAAATTGTCACCACCTCGAATATAAAACA
CTATTACATGTTTTTTTTAGCTTGAAGTTGAACAGATATATTTTATGTTT
TATGTTTGACACCAAAGAACAGAAATTATTTTTCCTCACATTTTTTCTCC
CCACCCTTGACTTTTTGGAGCTATTTTTTCTCCCCCTCCTTTTGATTTAC
CCCCTAGAATTTTGAAAACAATTTTGCTCACCCTTTTCCCATTTTCTGAA
AAAAAACTCCCCCCTTTTAATAGGGGGGGGGGGGGGACACTATGGAGACT
GGACTTAAAAAAATTTTGGTTTGCCATCACCCGACCCTAGGTTTTGGAGG
TGAGTCGGTCGGTTGGAaaaaggttttattttgacGATTTATGAAAGTTC
AgtttgaatgaaatttgaaCAGCTACAAGGGAATTCACGATTGTTATAAG
GTTTAAGAACGAGACAGACACATTAGACGTtctgatttgaagaaaaaaat
cttctttaaaattggCAATTAATTTTTTggggtcggcaggtttcgagaAA
GTTTCGGTCGgatgacggcaaaccaacattttttaaattgcAAACTGATA
AAGAAACTTTCACAAGTACCGTCTTGTACCGTGAACTTCAGACAATTTTT
CTGGAGAAAAAATCCGAAATAATTACCCTTCTGaaatatgtttaaaaaat
gCTCTGAAATACagtagtctctttaactcgaacccgcacggagaatatta
agcagatattcgacaagaaaaatcggatatcgaaaattatccagtcgagc
ttgatgatattcgacGGAGCAAAGCTGAGTCGAATATCATTAAACCGTTT
TGCTTAGAGGTGGACGATAATTATATTTATTTAACATTATATTTATTCAA
GttgaggaaatttcgagttatggagtaatgTTTGTAAATCATTGTtcact
gaagggaccataaaactttcTTGAGCTAAGGAGACAatcgagtaatagag
gttcgagttaaagagagtcagaaaactatttttatttgCATAGACTGTCT
TCTATTCATACGACATAATGTAACGAACTATGTTTTCAAAACATCCAATG
AAGTTTGATATAATCTTGGCATTTATAGATCCAGGGTTTCGTtcttttta
actaaaatatatttatcaaaaccgaaatttttaaacttttcgtatttttt
ttgtagattttgtagTTTTAAAATTAACAACTTCAAACTCCTAGCCAATT
TAAAGCTCCAAAGGgatagaaagaaagaagaagaagaagaagaagaagcc
tTTCTTTTTTGCCGTGTGAAAATTATAGAtccaaaatttgactttttgat
aGATTCTTTACTCTTTTGAacttgtaataagaaattttaaagctttaaaa
tttcttattacaagtTCAAAAGAGTAAAGAATCtatcaaaaagtcaaatt
ttggaTCTATAATTTTCACACGGCAAAAAAGAAAGGCTTCTTTAGTCATC
CCTTTGGAGCTTTAAATTGGCTAGGAGTTTGAAGTTGTTAATTTTAAAAc
tacaaaat Coding sequence (CDS) from alignment at sc0002537:14955..18662+ >TCONS_00040716 ID=TCONS_00040716|Name=TCONS_00040716|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0002537:14955..18662+ (Clytia hemisphaerica)
ATGAACAAAATATCAATGCTGACCCTCCTAATAATAGCAGCTCTCGGAAT
CAAACAACTAACACAGGAGGGCTGCTCACCAAAACACTCAGCCTCCCCCA
CCTCAGATGGGACAACCCCGTCCACAGATGGGACAACCTCAACCTATGAT
GTATCCACAACAACCACCAATGTATGGCCAGCAACCCATGTATGGTTATG
GTCAACAACCCATGTATGGTCCCCCTATGTATGGGCAACCCATGTACCAA
CAGCCTGTCTATGTTCAACAGGCTCCCCAGCAGCAGCAGTCAAGAGGTGG
CAGCAATACAGattttgtagTTTTAAAATTAACAACTTCAAACTCCTAGC
CAATTTAAAGCTCCAAAGGgatagaaagaaagaagaagaagaagaagaag
aagcctTTCTTTTTTGCCGTGTGAAAATTATAGAtccaaaatttgacttt
ttgataGATTCTTTACTCTTTTGAATGAACAAAATATCAATGCTGACCCT
CCTAATAATAGCAGCTCTCGGAATCAAACAACTAACACAGGAGGGCTGCT
CACCAAAACACTCAGCCTCCCCCACCTCAGATGGGACAACCCCGTCCACA
GATGGGACAACCTCAACCTATGATGTATCCACAACAACCACCAATGTATG
GCCAGCAACCCATGTATGGTTATGGTCAACAACCCATGTATGGTCCCCCT
ATGTATGGGCAACCCATGTACCAACAGCCTGTCTATGTTCAACAGGCTCC
CCAGCAGCAGCAGTCAAGAGGTGGCAGCAATACAGattttgtagTTTTAA
AATTAACAACTTCAAACTCCTAGCCAATTTAAAGCTCCAAAGGgatagaa
agaaagaagaagaagaagaagaagaagcctTTCTTTTTTGCCGTGTGAAA
ATTATAGAtccaaaatttgactttttgataGATTCTTTACTCTTTTGAAT
GAACAAAATATCAATGCTGACCCTCCTAATAATAGCAGCTCTCGGAATCA
AACAACTAACACAGGAGGGCTGCTCACCAAAACACTCAGCCTCCCCCACC
TCAGATGGGACAACCCCGTCCACAGATGGGACAACCTCAACCTATGATGT
ATCCACAACAACCACCAATGTATGGCCAGCAACCCATGTATGGTTATGGT
CAACAACCCATGTATGGTCCCCCTATGTATGGGCAACCCATGTACCAACA
GCCTGTCTATGTTCAACAGGCTCCCCAGCAGCAGCAGTCAAGAGGTGGCA
GCAATACAGattttgtagTTTTAAAATTAACAACTTCAAACTCCTAGCCA
ATTTAAAGCTCCAAAGGgatagaaagaaagaagaagaagaagaagaagaa
gcctTTCTTTTTTGCCGTGTGAAAATTATAGAtccaaaatttgacttttt
gataGATTCTTTACTCTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040716-exon-sc0002537-1491911889:14955..14991 | TCONS_00040716-exon-sc0002537-1491911889:14955..14991 | Clytia hemisphaerica | exon |
| TCONS_00040716-exon-sc0002537-1510915933:14955..14991 | TCONS_00040716-exon-sc0002537-1510915933:14955..14991 | Clytia hemisphaerica | exon |
| TCONS_00040716-exon-sc0002537-1575043694:14955..14991 | TCONS_00040716-exon-sc0002537-1575043694:14955..14991 | Clytia hemisphaerica | exon |
| TCONS_00040716-exon-sc0002537-1491911889:15730..15829 | TCONS_00040716-exon-sc0002537-1491911889:15730..15829 | Clytia hemisphaerica | exon |
| TCONS_00040716-exon-sc0002537-1510915933:15730..15829 | TCONS_00040716-exon-sc0002537-1510915933:15730..15829 | Clytia hemisphaerica | exon |
| TCONS_00040716-exon-sc0002537-1575043694:15730..15829 | TCONS_00040716-exon-sc0002537-1575043694:15730..15829 | Clytia hemisphaerica | exon |
| TCONS_00040716-exon-sc0002537-1491911889:16448..16725 | TCONS_00040716-exon-sc0002537-1491911889:16448..16725 | Clytia hemisphaerica | exon |
| TCONS_00040716-exon-sc0002537-1510915933:16448..16725 | TCONS_00040716-exon-sc0002537-1510915933:16448..16725 | Clytia hemisphaerica | exon |
| TCONS_00040716-exon-sc0002537-1575043694:16448..16725 | TCONS_00040716-exon-sc0002537-1575043694:16448..16725 | Clytia hemisphaerica | exon |
| TCONS_00040716-exon-sc0002537-1491911889:18311..18662 | TCONS_00040716-exon-sc0002537-1491911889:18311..18662 | Clytia hemisphaerica | exon |
| TCONS_00040716-exon-sc0002537-1510915933:18311..18662 | TCONS_00040716-exon-sc0002537-1510915933:18311..18662 | Clytia hemisphaerica | exon |
| TCONS_00040716-exon-sc0002537-1575043694:18311..18662 | TCONS_00040716-exon-sc0002537-1575043694:18311..18662 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002537 | supercontig | sc0002537:14955..18662 + |
Blast
The following BLAST results are available for this feature:
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