|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040711 ID=TCONS_00040711|Name=TCONS_00040711|organism=Clytia hemisphaerica|type=transcript|length=1853bp
CAACGACGCACAATCCAAGGACGAGAACGTTCTTCCAACCAAAGATGTTA
TTCCTCCATCACCAAAGGTACTTAACTTTTTAATCTTCCTTTAATTCTTT
CCTTCGTCCGTTTGTTCCTCCATCGgtctgtctgttaccagcttttctcg
gttTTGGctccttagttttttcttatttttattcagTGTACTAGCAATTC
CCAAAATATGACGGTAGTCTTCTCCTTTGTTTTTCTTCCGGCCAAAAAGA
AACCTTTGCGTCCCGTGAACGTGATCACGAATTTCGTTTGATCTGATTTA
CGTTAGAATAATGAAACCAGTGCCAACGACGAACAATCCAAGGACGAGAA
CATTCTTCCAATCGAAGATATTATTTCCCCCTTACCAAAGGTACTTGATT
TTTGAACCTTCCTTTAATTTTAGGCCTTTGTCTGGTAAAAGATTCATTTC
CGGTTGAATTCACTATTTTACTCCAGTGACTTTATGTGACGGACATAACA
AACTGACTTTAAAGAGAAATATGTAGTTTTCTACTTTGTTTATATATCGA
AATCACTGTCTTACGCAgaaaaaaatagggaaaaagCTGATCGAAGGTGA
TTCCTTCCTGCAAAAAAGAAAGCTTTGCGTCCCGTGAACCTGACTTTTCG
TTTTATTTGATTTACGTTAGAATAATGAAACCAATGCCAACGACGCACAT
TCCAAGGACGAGAACGTTCTTCCAACCAAAGATGTTATTCCTCCATCACC
AAAGGTACTTAACTTTTTAATCTTCCTTTAATTTTTTCCTTCGTCCGTTT
GTTACTCCGTCGGTCCGTCTGTTACTAGCAATTCCCAAAATATTACGATA
GTTTTGTCCTATGTTTTCCTTCCGGTCAAAAAGAAACCTTTGCGTCCCGT
GAACGTGATCACGAATTTCGTTTGATTTGATTTACGTTAGAATAATGAAA
CCAGTGCCAACGACGAACAATCCAAGGACGAGATGATTCTTCCAATCGAA
GATATTATTTCCCCCTTACCAAAGGTACTTGATTTTTGAACCTTCCTTTA
ACTTTAGGCCTTTGTCTGGTAAAAGATTCATTCCCGGTTGAATTCACTAT
TTTAGTCCAGTGACTTTATGTGACGGGCATAACAAACTGACTTTAAGGAA
AAATATGTAGTTTTCTACTTTATTTATATAAATCGATGTCACTGTTTGAC
GCAtaaaaaaatagggaaaaagCTGATCGAAGGTGATTCTTTCCTGCCAA
CAGGAAAGCTTTGCGTCCCGTGAACGTGATCATGAATTTCGTTTTCTTTG
ATTAACGTTAGAGTAATGCAACCAATGCCAACGACGAACAATCCAAGGAC
GAGAACATTCTTCCAACCGAAGATATTATTCCCCCATCACCAAAGGTACT
TGATTTTTGAATCTTCCTTTAACTTTAGCCTTTGTCCCTTTGTTCCTCCC
TTCgtttgttaccagcttttctcggtattagttcatcatttttttctttt
cttttttttctcaacttcagttgagctagaatctgagaatgtctgtctgt
ctgtctgtctgtgtgtgtatctgtctgtctgtgtgtatgtcccaaaactt
tagggcagcctggagacttcaaaaattgtcggatttggctgaaatttggc
acacttgttccttgggtcaATATCCGGgggtgcttttttcattttttgaa
aattttgatttttggggcctggggacgagtttttcgccaaagcgaggcta
aaactttggggcagcctggagacttcaaaaattgtcggatttggctgaaa
tttggcacacttgttccttgggtgaatatctgggggtgtttttttcattt
ttc Run BLAST on NCBI transcript from alignment at sc0002536:11554..13406- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040711 ID=TCONS_00040711|Name=TCONS_00040711|organism=Clytia hemisphaerica|type=transcript|length=1853bp|location=Sequence derived from alignment at sc0002536:11554..13406- (Clytia hemisphaerica)
CAACGACGCACAATCCAAGGACGAGAACGTTCTTCCAACCAAAGATGTTA
TTCCTCCATCACCAAAGGTACTTAACTTTTTAATCTTCCTTTAATTCTTT
CCTTCGTCCGTTTGTTCCTCCATCGGTCTGTCTGTTACCAGCTTTTCTCG
GTTTTGGCTCCTTAGTTTTTTCTTATTTTTATTCAGTGTACTAGCAATTC
CCAAAATATGACGGTAGTCTTCTCCTTTGTTTTTCTTCCGGCCAAAAAGA
AACCTTTGCGTCCCGTGAACGTGATCACGAATTTCGTTTGATCTGATTTA
CGTTAGAATAATGAAACCAGTGCCAACGACGAACAATCCAAGGACGAGAA
CATTCTTCCAATCGAAGATATTATTTCCCCCTTACCAAAGGTACTTGATT
TTTGAACCTTCCTTTAATTTTAGGCCTTTGTCTGGTAAAAGATTCATTTC
CGGTTGAATTCACTATTTTACTCCAGTGACTTTATGTGACGGACATAACA
AACTGACTTTAAAGAGAAATATGTAGTTTTCTACTTTGTTTATATATCGA
AATCACTGTCTTACGCAGAAAAAAATAGGGAAAAAGCTGATCGAAGGTGA
TTCCTTCCTGCAAAAAAGAAAGCTTTGCGTCCCGTGAACCTGACTTTTCG
TTTTATTTGATTTACGTTAGAATAATGAAACCAATGCCAACGACGCACAT
TCCAAGGACGAGAACGTTCTTCCAACCAAAGATGTTATTCCTCCATCACC
AAAGGTACTTAACTTTTTAATCTTCCTTTAATTTTTTCCTTCGTCCGTTT
GTTACTCCGTCGGTCCGTCTGTTACTAGCAATTCCCAAAATATTACGATA
GTTTTGTCCTATGTTTTCCTTCCGGTCAAAAAGAAACCTTTGCGTCCCGT
GAACGTGATCACGAATTTCGTTTGATTTGATTTACGTTAGAATAATGAAA
CCAGTGCCAACGACGAACAATCCAAGGACGAGATGATTCTTCCAATCGAA
GATATTATTTCCCCCTTACCAAAGGTACTTGATTTTTGAACCTTCCTTTA
ACTTTAGGCCTTTGTCTGGTAAAAGATTCATTCCCGGTTGAATTCACTAT
TTTAGTCCAGTGACTTTATGTGACGGGCATAACAAACTGACTTTAAGGAA
AAATATGTAGTTTTCTACTTTATTTATATAAATCGATGTCACTGTTTGAC
GCATAAAAAAATAGGGAAAAAGCTGATCGAAGGTGATTCTTTCCTGCCAA
CAGGAAAGCTTTGCGTCCCGTGAACGTGATCATGAATTTCGTTTTCTTTG
ATTAACGTTAGAGTAATGCAACCAATGCCAACGACGAACAATCCAAGGAC
GAGAACATTCTTCCAACCGAAGATATTATTCCCCCATCACCAAAGGTACT
TGATTTTTGAATCTTCCTTTAACTTTAGCCTTTGTCCCTTTGTTCCTCCC
TTCGTTTGTTACCAGCTTTTCTCGGTATTAGTTCATCATTTTTTTCTTTT
CTTTTTTTTCTCAACTTCAGTTGAGCTAGAATCTGAGAATGTCTGTCTGT
CTGTCTGTCTGTGTGTGTATCTGTCTGTCTGTGTGTATGTCCCAAAACTT
TAGGGCAGCCTGGAGACTTCAAAAATTGTCGGATTTGGCTGAAATTTGGC
ACACTTGTTCCTTGGGTCAATATCCGGGGGTGCTTTTTTCATTTTTTGAA
AATTTTGATTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAGCGAGGCTA
AAACTTTGGGGCAGCCTGGAGACTTCAAAAATTGTCGGATTTGGCTGAAA
TTTGGCACACTTGTTCCTTGGGTGAATATCTGGGGGTGTTTTTTTCATTT
TTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040711-exon-sc0002536-1575043694:11554..13406 | TCONS_00040711-exon-sc0002536-1575043694:11554..13406 | Clytia hemisphaerica | exon |
| TCONS_00040711-exon-sc0002536-1510915933:11554..13406 | TCONS_00040711-exon-sc0002536-1510915933:11554..13406 | Clytia hemisphaerica | exon |
| TCONS_00040711-exon-sc0002536-1491911889:11554..13406 | TCONS_00040711-exon-sc0002536-1491911889:11554..13406 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002536 | supercontig | sc0002536:11554..13406 - |
Blast
The following BLAST results are available for this feature:
|
