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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040708 ID=TCONS_00040708|Name=TCONS_00040708|organism=Clytia hemisphaerica|type=transcript|length=1098bp
CACCAACCAAACtagctttttctttttcgtaaATATCATAGTGCATATCA
GCTGTCTTTTTACTATGTGCCATGAGAATCGCTATTTCTTTTGTATGAGG
GTTATTTTCTTCACGAGATCGTGTGGAAGCGGTTTGCCTTATGTGATTCA
TACACAGATTTCGGGGAATTTCCTGCCCATCGAATATTCCACTATCCTTC
CATGCAGAGTGGAGAAATTTTGATGGATCAGACAATTGAAGGGCTTTTCC
AGACCACGTAACAAACACTTCATCCACGCTTGGGTTAAGTTGTGGTCTAA
TTCTCTCCACATAAATCTTTAAGTTGTTGAATGCATTGTGTCGTAGATGG
ACTGGTGCGGGCCCGTAACTTTCAATAGTTTTGTGGTCCCAGACAGGAAT
TTTGATGAACTCTTCACTCTTAATGAATCCTTTGAACTCGTTCATCTTCA
TGTGCACAGCCACTCCCGAGCGATGAGCATTGGCTAAGCCAATCTCAACC
ACAAGGCTACTGCGGACAATGGTGTGTTGAGATCTTGTAATTTGGGTATT
TGGATTTGTTCTATGTTCGTGAATGATTTTGGTGGCTTTAGCCTTAAAAG
GTCCATTGTCATATTTCCGAACCTGCTCTCTAGTAACACTCATAACACGA
TcgtctacacgttttttgtGGCTGAACATTTTACACTTCTTACTTAATTT
CTTTCTCCAATCTTTTATGATATTTTCGGTATGTAATATATTGGGAGTGT
TTAAATTGTGGCATTTTGACGAGTGGCCAAGAAAGTGCAAAAAATCCATC
ATCGAGCCAAGATACGTTTTTATAGTTCCTGGTGAcagtttcttattttc
acaaagAGCAACATATTTGAGGAGCAATTCATCCGTTGCAACAAATTCTT
CTAAACCTTTTAGATCTTTGGCCTCGATTGTTCTCAGGATCCTGCGGACG
TCATTTGAAACACATATTAGGGATCTTTTCTTTCGCCCACGATACGGACC
AGTCATATAGTCTACGAATTTTAGGATCAAGTTCTCTAAATCTTTATCAA
GATCACCAGCTTTTTGATGGTCGGTATCACGGTCGGCATCATGGTCGG Run BLAST on NCBI protein sequence of TCONS_00040708-protein >TCONS_00040708-protein ID=TCONS_00040708-protein|Name=TCONS_00040708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
DHDADRDTDHQKAGDLDKDLENLILKFVDYMTGPYRGRKKRSLICVSNDV
RRILRTIEAKDLKGLEEFVATDELLLKYVALCENKKLSPGTIKTYLGSMM
DFLHFLGHSSKCHNLNTPNILHTENIIKDWRKKLSKKCKMFSHKKRVDDR
VMSVTREQVRKYDNGPFKAKATKIIHEHRTNPNTQITRSQHTIVRSSLVV
EIGLANAHRSGVAVHMKMNEFKGFIKSEEFIKIPVWDHKTIESYGPAPVH
LRHNAFNNLKIYVERIRPQLNPSVDEVFVTWSGKALQLSDPSKFLHSAWK
DSGIFDGQEIPRNLCMNHIRQTASTRSREENNPHTKEIAILMAHSKKTAD
MHYDIYEKEKASLVG Run BLAST on NCBI transcript from alignment at sc0002534:20547..21644 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040708 ID=TCONS_00040708|Name=TCONS_00040708|organism=Clytia hemisphaerica|type=transcript|length=1098bp|location=Sequence derived from alignment at sc0002534:20547..21644 (Clytia hemisphaerica)
CCGACCATGATGCCGACCGTGATACCGACCATCAAAAAGCTGGTGATCTT
GATAAAGATTTAGAGAACTTGATCCTAAAATTCGTAGACTATATGACTGG
TCCGTATCGTGGGCGAAAGAAAAGATCCCTAATATGTGTTTCAAATGACG
TCCGCAGGATCCTGAGAACAATCGAGGCCAAAGATCTAAAAGGTTTAGAA
GAATTTGTTGCAACGGATGAATTGCTCCTCAAATATGTTGCTctttgtga
aaataagaaactgTCACCAGGAACTATAAAAACGTATCTTGGCTCGATGA
TGGATTTTTTGCACTTTCTTGGCCACTCGTCAAAATGCCACAATTTAAAC
ACTCCCAATATATTACATACCGAAAATATCATAAAAGATTGGAGAAAGAA
ATTAAGTAAGAAGTGTAAAATGTTCAGCCacaaaaaacgtgtagacgATC
GTGTTATGAGTGTTACTAGAGAGCAGGTTCGGAAATATGACAATGGACCT
TTTAAGGCTAAAGCCACCAAAATCATTCACGAACATAGAACAAATCCAAA
TACCCAAATTACAAGATCTCAACACACCATTGTCCGCAGTAGCCTTGTGG
TTGAGATTGGCTTAGCCAATGCTCATCGCTCGGGAGTGGCTGTGCACATG
AAGATGAACGAGTTCAAAGGATTCATTAAGAGTGAAGAGTTCATCAAAAT
TCCTGTCTGGGACCACAAAACTATTGAAAGTTACGGGCCCGCACCAGTCC
ATCTACGACACAATGCATTCAACAACTTAAAGATTTATGTGGAGAGAATT
AGACCACAACTTAACCCAAGCGTGGATGAAGTGTTTGTTACGTGGTCTGG
AAAAGCCCTTCAATTGTCTGATCCATCAAAATTTCTCCACTCTGCATGGA
AGGATAGTGGAATATTCGATGGGCAGGAAATTCCCCGAAATCTGTGTATG
AATCACATAAGGCAAACCGCTTCCACACGATCTCGTGAAGAAAATAACCC
TCATACAAAAGAAATAGCGATTCTCATGGCACATAGTAAAAAGACAGCTG
ATATGCACTATGATATttacgaaaaagaaaaagctaGTTTGGTTGGTG Coding sequence (CDS) from alignment at sc0002534:20547..21644 >TCONS_00040708 ID=TCONS_00040708|Name=TCONS_00040708|organism=Clytia hemisphaerica|type=CDS|length=1095bp|location=Sequence derived from alignment at sc0002534:20547..21644 (Clytia hemisphaerica)
GACCATGATGCCGACCGTGATACCGACCATCAAAAAGCTGGTGATCTTGA
TAAAGATTTAGAGAACTTGATCCTAAAATTCGTAGACTATATGACTGGTC
CGTATCGTGGGCGAAAGAAAAGATCCCTAATATGTGTTTCAAATGACGTC
CGCAGGATCCTGAGAACAATCGAGGCCAAAGATCTAAAAGGTTTAGAAGA
ATTTGTTGCAACGGATGAATTGCTCCTCAAATATGTTGCTctttgtgaaa
ataagaaactgTCACCAGGAACTATAAAAACGTATCTTGGCTCGATGATG
GATTTTTTGCACTTTCTTGGCCACTCGTCAAAATGCCACAATTTAAACAC
TCCCAATATATTACATACCGAAAATATCATAAAAGATTGGAGAAAGAAAT
TAAGTAAGAAGTGTAAAATGTTCAGCCacaaaaaacgtgtagacgATCGT
GTTATGAGTGTTACTAGAGAGCAGGTTCGGAAATATGACAATGGACCTTT
TAAGGCTAAAGCCACCAAAATCATTCACGAACATAGAACAAATCCAAATA
CCCAAATTACAAGATCTCAACACACCATTGTCCGCAGTAGCCTTGTGGTT
GAGATTGGCTTAGCCAATGCTCATCGCTCGGGAGTGGCTGTGCACATGAA
GATGAACGAGTTCAAAGGATTCATTAAGAGTGAAGAGTTCATCAAAATTC
CTGTCTGGGACCACAAAACTATTGAAAGTTACGGGCCCGCACCAGTCCAT
CTACGACACAATGCATTCAACAACTTAAAGATTTATGTGGAGAGAATTAG
ACCACAACTTAACCCAAGCGTGGATGAAGTGTTTGTTACGTGGTCTGGAA
AAGCCCTTCAATTGTCTGATCCATCAAAATTTCTCCACTCTGCATGGAAG
GATAGTGGAATATTCGATGGGCAGGAAATTCCCCGAAATCTGTGTATGAA
TCACATAAGGCAAACCGCTTCCACACGATCTCGTGAAGAAAATAACCCTC
ATACAAAAGAAATAGCGATTCTCATGGCACATAGTAAAAAGACAGCTGAT
ATGCACTATGATATttacgaaaaagaaaaagctaGTTTGGTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040708-exon-sc0002534-1491911889:20547..21644 | TCONS_00040708-exon-sc0002534-1491911889:20547..21644 | Clytia hemisphaerica | exon |
| TCONS_00040708-exon-sc0002534-1510915933:20547..21644 | TCONS_00040708-exon-sc0002534-1510915933:20547..21644 | Clytia hemisphaerica | exon |
| TCONS_00040708-exon-sc0002534-1575043694:20547..21644 | TCONS_00040708-exon-sc0002534-1575043694:20547..21644 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002534 | supercontig | sc0002534:20547..21644 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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