TCONS_00040684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040684
Unique NameTCONS_00040684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040684 ID=TCONS_00040684|Name=TCONS_00040684|organism=Clytia hemisphaerica|type=transcript|length=750bp
GAATGGTTTTTCTCCAGTGTGCATTCTTTTATGTTTCATTGAatcacttt
ttgttttgaagtatTTACCACATTCCTGACACCTTGAAAGTGGTTCCCCA
GTGTGTTCTCTGAGATGATTCTTTAAAAGATATTTACTTCGAAATGATTT
ACCACATTCCTCACATTTAAATGATTCGATATCACTGTGAATCTTTACAT
GCACATTTAAACTACTTTGTCGAGTAAAACATTTACCACAATCTTGACAC
TTGAAAGGTCTTTCGCCAGTGTGAATTCTAAAATGTCTCTTCAAATCACA
GTTGAACTTGAAAGCTTTACCACACTCTTtgcaaataaaatttcttttac
tCCTTTTTGTGGCAAGATTATTTTTCCTTTCCCTGATTTCTGCATTTTCT
GCTTGTAAATTGGTGGCATCTGTTGTTAAGTTTGTTGGTAGAATTATTTC
ATCAAGTTCaattttaatatcaaaagaGTCGGGTTGATGCTGAGAATCGG
ATACCTCTTCGACAGGGGCCAAAGAATTATTATCCTCTTCAATCTTTATC
TTCATTGATATATCATAATTTATGTTTGTATCAACAAATTCATGTTTTTC
CTCtccaaataaatcaaaattagcATCCTCTGGACCAATATTGAGTGTAA
CCGAATTCATATAATTTTTGTCACGTTCCATTTCATTGAAAAACTCGTCG
ATCTCACTTTTCATATTAATAGTTTTCTTTTTACTGTCTTTATTTTCctg
Run BLAST on NCBI

transcript from alignment at sc0002523:588..12717-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040684 ID=TCONS_00040684|Name=TCONS_00040684|organism=Clytia hemisphaerica|type=transcript|length=12130bp|location=Sequence derived from alignment at sc0002523:588..12717- (Clytia hemisphaerica)
GAATGGTTTTTCTCCAGTGTGCATTCTTTTATGTTTCATTGAATCACTTT
TTGTTTTGAAGTATTTACCACATTCCTGACACCTTGAAAGTGGTTCCCCA
GTGTGTTCTCTGAGATGATTCTTTAAAAGATATTTACTTCGAAATGATTT
ACCACATTCCTCACATTTAAAAGATTCGATATCACTGTGAATCTTAAGAT
GTGCATTTAACCTATTTTTTTGAATAAAACATTTACCACATTCTTGACAC
ATAAAAGGTTTTTCGCCAGTGTGAATTCTAAGATGATCTTTCAAATCACA
GTTGAACTTGAAGACTTTGCCACACTTTTTGCATTTAAAACTTTGGCCAC
GTTCTTTTGTGGCAAGATCATTTTTTCTTTCCCTGGTTTCTGCATTTCCT
GCTTGTAAATTAGTGGCGGCATCTGTTGTCAAGTTTGTTGTTTGAATTAT
TTCATCGAGTTCAATTTTAATATCAAAAGAGTCTGATTGATGCTGAGATT
CGGATACCTCTTCGACAGGGGCCAAAGAATTATTTTCCTCTTCAATCTTT
ATTTTCAAGGGTATATCGTCTGTGTTTGAGTCAATAAATTTATGATTTTC
CACTCCAAAGAAACCAAAATTAACATCCTCCGGTCCAATCTTGATGCAAA
CCGAATTCAGATCATTGTAGTTGTTTATTTCTCTATTCATAATATTGCTT
TTCTTTTTATCGCCTTTATTTTACTGTAAAAATTAAATGAAAGAAGTTGG
TAATCATATCTTTATAAAATTATCAATAATTTGATTCCTGTGTATAGTAC
GCCTGTGACAAAAAAATTTGACAATCTTTCAGTCAAAAAGTCAATATTGA
CTCTCAAAATGTAATTCAAAGCGGTTTGTATTTCAAAAAAACTTGATTAA
AATACTTTCAATAATTTACTTCACAATTTAGTAAAACAAATAGAATTAAA
AATGCTCAAGGAAGTACCAATGAATCAGAGATCAACAGTGATAAACAAAG
AGCTAACCTACAAATGCTACACTGCAATTCATGTAGATGCTATTTTCACG
CAATGTAGTGTATTTAAATTTTCATTTGAAGGAACAATCTACAATACATT
GTATTGCCTTAAGATTGCAATTGAAGATTTTGAGTTAGTTCCTTATTTCT
AGCATGTTCAAATTATAATTTTTTGGTCCTCAGAAATAAAATATCATAAA
ACAACTGCCTTGTGATGAATATACCAGAATATACTCTTATTTTTTACCTA
TTATCGGCGACACACATAATATATTATTTAATATTTCCAATGATCAATTT
TCTTTAACCTCGTTTCTTCGTTCTTGACAATCAAACTAGCAACATCCAAT
AGATTTTGATTTTGATGTATTTTAGTTGATAATTCATTGAATTCACTTTT
TCCATCCGGTTGAACTATTTCTTTGGAATGACTTTTAACATGAACAGTTA
AACTACTTACACTGTTAAAACATTTGCCACATTTGATACTTTGGAGAGGT
TTTTCTCGTTCTATTAATTGGAGAAGAAGTTTTTTTCGTTTATGAGTCTT
GATGTGATAATCAAAACCATTTTTGTGTGCAAAGCATTTACCACATTCCT
TACATTTAAATGAGTTGATCTTATTGTGTATGTATGAATGTTGTATCAAG
TAAGGTCGTTGGGAAAATTGTTTACCACATTTTTCACATTTAAATGGTTT
GATTTTACTGTGCAAGTACAAATGTCTATTTAAGCTTCTTTTTACGGAGA
AACATTTACCGCATTCAATGCACTTAAATAGTTTTTGTCCAGTATGCATT
CTCATGTGAACTTTTAAACTTCCTTTTTTAGGAAAACATTTACCACATTC
TTCACATTTGAATGATTATTCTTTGGTGTGTATTCTCGTGTGAACTTTAA
AAAGTTCTTTCCTTTGAAAACAATTACCACATTCTTCACATTTGAATGTT
TTTTCTTTGGTGTGTATTGTTTTATGTTGCTTTAACGAACAATTTGTTTT
AAAACATTTGCCACATTCCTCACATTTGAATGACTTTTTTTCGGTGTGTA
ACTTAATATGCTTTTTTAAAGAACCATTTGTTTTAAAGTTTTTACCGCAT
TCCTCACATTTAAATGGTTTAATGCTGCTATGCACTATAAGATGCTGTGT
TAGACCATCTGATTGGGCAAAACATTTACCACAATCTTGACACATGAAAG
GTCTTTCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCTAAAAAATAAAATAAACAACTACCTTGTAA
AAATACTCTATTTTTCGCATAATATCAACTGCACATAAAATATACTCAAT
ACTTCGAATAATCGATTTTCTTTAACTTCGTCTCTTCGTTCTCGACAATC
AAACTAGCAACATTAAATAAATTTATATCTTGATGTTTTTTAGTTGACAA
TTCTTTGGATTCACTTTTACCATCGGTCGGAACAATTTCTTCGGGGCGGA
TTTTAACATGAGCAGTCAAATGACTTAAACTGTTAAAACATTTATTACGT
TTGTTACATCAGAAAGCATTGTCTTGTTCTTCAATTTGGACATGTTTTTT
ACACTTATGACTCTTGATGTGAAAATTCAAAGTATCTTTTCGGGAAAAGC
ACTTATCACATGCCTTACATTTAAATGATTTGACTCCATCGTGTACGTTT
GAATGTCGTGTCACATTACCTCGTTGAGAAAATCGTTTACCACACTCTTG
GCACTTAAAAGGTTTTTCTCCAGTATGTATTCTAATATGAAATTTTAAAA
TGTCTTTCCTTTGAAAACATTTACCACACTCTTCACACTTTAATGGCTTT
TGTCCCGTATGTATTCTCATGTGAATTTTTAAAATTTCTTTCCTTTGAAA
ACATTTACCACACTCTTCACACTTGAATGGCTTTTGTCCAGTATGTANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCCCATTTGATACATTGGATAGGTTTTTCTCGTTCTATTAATTGGAGA
AGAAGTTTTTTTCGTTTGTGAGTCTTGATGTGATAATCGAAACAATTTTT
GTGTGCAAAGCATCTACCACATTCCTTACATTTAAATGAGTTGATCTTAT
TGTGCACGTATGAATGTTGTATCAAGTAACCTCGTTGGGAAAATTGTTTA
CCACNGTGCAAAGCATCTACCACATTCCTTACATTTAAATGAGTTGATCT
TATTGTGTACGTATGAATGTTGTATCAAGTAACCTCGTTGGGAAAATTGT
TTACCACATTTTTCACAATTAAATGGTTTGATTTCACTGTGCAAGTACAA
ATGTCTATTTAAGCTTCTTTTTACGGAGAAACATTTACCGCATTCAATGC
ACTTAAAAAGTTTTTGTCCAGTATGCATTCTCATGTGAACTTTTAAACTT
CCTTTTTTAGGAAAACATTTACCACATTCTTCACATTTGAATGATTTTGC
TTTGGTGTGTATTCTCGTGTGAACTTTAAAAAGTTCTTTCCTTTGAAAAC
ATTTTCCACATTCTTCACATTTGAATGTTTTTTCTTTTATGTGTATTGTT
TTATGTTGCNCTTTGCATTTAAAACTTTGGCCACGTTCTTTTGTGATAAG
ATTATTTTTCCTTGTCTTGGGAATAGGATTTTCTACTTGTAAATTGGTGG
CATCTGTTGTTAAGTTTGTTGGTAAAATTATTTCATCCAGTTTGATTTTA
ATATCAAAAGAATCTGGTTGATGCTGAGAATCGGATATTGTTGTAAACGT
TTTGTTTTGATTGAAAGGTCTGACATGTAGTAAAAACAAGTGCGACAAGA
TTATAGAAAAAGGTTTTGAAAAAATGAAAAAACATTGAATTCCTTTAAGG
GACTTTTACTGATACTCTTTCGAATGTTTATATGTTTATAATAAATAGAA
AGTTTTCTATCTTATAATCAAAACATTCGATTGTAAATTTGCTCAAAATC
AACTTTGCTATTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAATATGAACTATACATTATACATACTTAATATTTCAAATGAG
TGATTTTCCTTAACCTCCTCTCGTCTTCGTTCTCCACAATCAGACTGGCA
ACATCAAATATATTTTGATTTTGATGTATTTTAGCTGATAATTCTGTAGA
TTCACTTTTTCCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNACTATGCAAGTACATGTGTCTATATAAGTTACCTC
TTTCAGAAAAACATTTACCACATTCTTTGCACTCAAAAGGTTGTTCTCCA
GAATGTACTCTCATGTGACCTTTTAAACTTTCTTTCCATGAAAAACATTT
ACCACATTCTTCACATTTGAATGGCTTTTGTCCGGTGTGTATCCTCATGT
GATCTTTCAAACTGCCTTTCCTTGTAAAAGATTTACCACATTCTTGACAC
TTGAATGGTTTTTCTCCAGTGTGCATTCTTTTATGTTTCATTGAATCACT
TTTTGTTTTGAAGTATTTACCACATTCCTGACACCTTGAAAGTGGTTCCC
CAGTGTGTTCTCTGAGATGATTCTTTAAAAGATATTTACTTCGAAATGAT
TTACCACATTCCTCACATTTAAAGGATTCGATATCACTGTGAATCTTAAG
ATGTGCATTTAAACTAACTTTTTGGGTAAAACATTTACCACATTCTTGAC
ACATGAAAGGTTTTTCACCAGTGTGATTTCAAAGATGATCTTTCAAATCA
CAGTTGAACTTGAAGACTTTACCACACTCTTTGCATTTAAAACTTTGGTC
ACGTTCTTCAAAAACCTTTTTGGGGCAAGAATATTTTTCCTTTCCCTGCT
GGTTTCTGCATTTTCTACTTGTAAGTTAGTGGCATCTATTGTTAAGTTTG
TTGGTGGAATTATTTCATCAAGTTCAATTTTAATATCAAAAGAGTCGGGT
TGATGCTGAGAATTGGATCTCTTCGACAGGGGCCAAATAATTATTTTCCT
CTTCAATCTTAATGTTCAATGGTATATCATCATCTACGTTTGTATCAACA
AATTCATGCTTCTCTCTCAAGAAATCTAAAAAAGCATCCTCTGTACCAAT
CTTGATGGAAACCAAATTCACTTTTTGTTCGTCTTTGATTTCTTTATTCA
CATCATTAGTTTTCTTTTGTTATCTTTATTTTTCCTGTAAAAAAGAAAAA
AAGGAAATTGCAATTAATTATCTTAACCTATTAACATTGATTTTATATTC
CGTATAGTTAATAGATATGGTCAAAACCCCTTGACAGCAAAATTCTCAAA
TCCCCGTGTAAACCCAAATACGTGCTCTTGAATTTAATTTCAAAAATACT
GTATTTTAAAGACAATTTCTCTATTTCAATTATTTAGTCAGGAATTAAGT
AAAATAAAAAGACTCACAAAGTGCTGAAGAAAATTTGGAAAAATTGAGCC
AAATATTGAGAGAAAAAGAACTGATTTATAATTTCTAATACGATTTTTCA
TGCTTGCTAAATCTTCATGCAATGCAGTGCATTGAAGATTTCAGTCCAAA
TAACAATCCACAATCCACTGCATTGCTTGGAGATTTCAATTGAAGGTTGG
ACAATTCTTTATTTTTAGATTTTGCAGAATTATAATTTTTGGTCCTAAAA
AAACACATAAATAACTACCTTGTAAAAATACTCTATTTTTCGCATAATAT
CAGCTGCAAACAAAATATACTCAACACTTCGAATAATCGATTTTCCTTAA
CCTCGTCTCTTCGTTCTCGACAATCAAACTAGCAACATCCAATAATTTTT
GATTTTGATTTTGATGTTTTTTAGTTGACAATTCTTTTTCTTCAATTTGG
ACATGTTTTATTCGTTTATGAGTCTTCATGTGAAGATTCGAAGTATCTTT
TCGGGAAAAAGAATTACCACATTCCTTACATTTAAATGATTTGATTCCAT
TGTGTATGTTTGAATGTCGTATCAAGTTACCTCGTTGAGAAAATCGTTTA
CCACATTCTTCAATTTTAAATGATTTGATTTCACTGTGCAAGTACAAATG
TCTATTTAAAGCTTCTTTTTACGGAGAAACATTTACCACATTCTGCACAC
TTGAATGGTTTTTGTCCAGTATGTACTGTCATGTGATATTTTAAACTGTT
TTTCCTTGGAAAAGATTTACCACATTTTTCACACTTGAATGGTTTATGTC
CAGTGTGGACTGTCATGTGATATTTCAAATTGCCTTTACTTTGAAAACAT
TTAACACACTCCTCACACTTGAATGACTTTTCTTTGGTGTGTATTCTTTT
ATGTTGCTTTAAAGAACCATTTGTTTTAAAGCATTTACCACATTCTTCAC
ATTTGAATGGCTTTTCTTCGGTATGTAATTTAATATGTTCCTTTAAAGAA
GTCTTTGTTTTAAAGCATTTACCACATTCTTCACATTTGAATGGCTTTTC
TTCGGTATGTAATTTAATATGTTCCTTTAAAGAAGTCTTTGATTAAAAGT
ATTTACCGCAGTTTTCACATTTAAATGGTCTAATGCTACTATGCACTATA
AGATGCTGTGTTAGAACATCTGATCGGGAAAAACATTTACCACATTCTTG
ACACTTGAAAGGTCTTTCGCCAGTATGAATTCTAAGATGTTTCTTCAAAT
CACAGTTGAATTTAAAGGATTTACCACACTCTTTGCATTTAAAACCTTTG
CCACGTTCTTTTGTGACAAGATTATTTTTCCTTGTCTTGGTTATAGGATT
TTCTGCTTGTAAATTAGTGGCATATTTTGTTAAGTTCGTTGGTGGAATTA
TTTCATCGATTCAATTTTAATATCAAAAGAGTCTGATTGATGCTGAGAAT
CGGATAACTCTTCGACATGGGCCAAAGAATTATTTTCCTCTTCAATCTTT
ATCTTCAATAGTATATCATCATTTATGTTTGTATCAACAAATTCATGTTT
TTTCTCTCCAAATAAATCAAAATTAGCATCCTCTGGACCAATCTCGAGTG
TAACCGAATTCATCTCATTTTTGTCACGTTCCATTTCGTTGGAAAACTCG
TCGATTTCACTTTTCATATCAATAGTTTTCTTTTTACTGTCTTTATTTTC
CTGTAAAAAGAAAAAAAGTTGTCACAATCAATTTGTTTAATCTATTATCA
ATAACTTGATATTCTGTATAATAAATTCCGGGTGCATTGAAAAAAAGTAT
ACAGTTTTGTTTAAATATTGTGAGCGTACTATCATAGGAGGAAGTATGAG
GAAAGTTTAAAGTCGTTTCTCTCAATAAAAAGTTATGTTAAGAAAAAATT
GACTATTTTGACCTACCTAAAATGACCAAATTCGTCAAAAACAGTAATCA
AAATAATAATGAAGAATCTACTTTTTGTACGTCAAAATTCTCAGTTTTTA
AAACACAATTTATGATTGACTGAACCAATTTTTAAGTTTTATATACTGTT
ATATCCCAAACTTTAAGTTAAGCTTTCCTCTTTAGAATGAAAAAAGAATC
TACGAAAAATCTTAAATCTTAAGCTTACAATAACAATTATTCCAACACCG
AGTAAACAAGGACTTAGAAGGAGCTTCACTTTTGTTATTTTGTTCAGAAT
CATAATTATTCAAACCTCGAAAATTGAACATCATTAAACAACTATTTTGT
TTGAGAAGAATATTCAACAAAAAGGAACTAAACATTATTATATATACTTA
ATATTTCAAATGAGTGATTTTACTTAACCTCCTCTCGTCTTCGTTCTCCA
CAATCAGACTGGCAACATCAAATAGATTTTGATTTTGATGTATTTTAGTT
GACAATTCTTTAGATTTACTTTTTCCATTCGGTTGAACTATTTCTTTGAA
ATGACTTTTAATGTGAACAGTCAAATGACTTACACTGTTAAAACATATGC
CACATTTGCTAAATCGGGAAGGTTTTTCTTTTTCTTCAATTTGGACATAT
TTTTTCCGTTTATGAGTCTTCATGTGAATATTCAAAGTATCTTTTCGGGA
AAAGCATTTACCACATTCCTTACATTTAAATGTTTTGATTCCTGTGTATG
TTTGAATGTCGTATCAAGTTACCTCGTTGGGAAATATGTTTACCACATTT
TTCACTTTCATATGGTTTGATTTGTAATCATCTTTATAAATTTGTCAATA
ATTTGACTCCTGTTCCGTAAATTTATTAGTATCCCTTGACATTATAATTT
GGCAATACCTAACTCAAAAAGTGGCTTGTATTTCAGCAAAATTTGACTAA
AATATTTTCAATTATTTAATCCACATTTAGTAAAATGAATGGAATAAAAA
ATGCTTAAAATACGAAAAAATTTGGATCAATATTGATAAACAAAGAGCTA
ACTTTCAATTGCTACACGGTAATTCATGCTGGCGCAATATTCACGCAATG
CAGCGTATTGAAGTTTTCATTTGAAGGAACAATCTACAATACATTTGCCT
TGCCTTAAGATTGCAATTGAAGATTATGAGATAATTCCTTATTTCTAGCA
TGTTCCAATTATAATTTTTTGGTCCTAAGATATAAAATATCGTAAAACAA
CTGCCTTGTGAATAATACTCTATTTTTAGCCTATCATCGGCGACACACAT
AATATATTATTTTAATATTTCCAATGATCAATTTTCTTTAACCTCGTCTC
TTCGTTCTCGACAATCAAGCTAGCAACATCCAATAGATTTTGATTTTGAT
GTATTTTAGTTGATAATTCTTTGAATTCACTTTTTCTATCCAGTTGAACT
ATTTCTTCGGAGTGACTTTTTACATGAGCAGTTAAACAACTTACACTGTT
AAAACATTTGCCACATTTGATACACTGGAGAGGTTTTTCTCGTTCTATTA
ATTGGAGAAGAAGTTTTTTTCGTTTGTGAGTCTTGATGTGAATATTCAAA
GTATTTTTTTGGGAAAAGCACTTTCCACATTCCTTACATTTATATGATTC
TATTCCATTGTGTATTTTTGAATGTTGTATAAAGTTACTACGTCGAGAAA
ACTGTTTACCACATTCTTTACATTTAAAAGGCTTTTCGCCAGTGTGAATC
TTTACATGCACATTTAAACTACTTTGTCGAGTAAAACATTTACCACAATC
TTGACACTTGAAAGGTCTTTCGCCAGTGTGAATTCTAAAATGTCTCTTCA
AATCACAGTTGAACTTGAAAGCTTTACCACACTCTTTACATTTAAATGAT
TCGATATCACTGTGAATCTTTACATGCACATTTAAACTACTTNTTTACCA
CAATCTTGACACTTGAAAGGTCTTTCGCCAGTGTGAATTCTAAAATGTCT
CTTCAAATCACAGTTGAACTTGAAAGCTTTACCACACTCTTTACATTTAA
ATGATTCGATATCACTGTGAATCTTTACATGCACATTTAAACTACTTTGT
CGAGTAAAACATTTACCACAATCTTGACACTTGAAAGGTCTTTCGCCAGT
GTGAATTCTAAAATGTCTCTTCAAATCACAGTTGAACTTGAAAGCTTTAC
CACACTCTTTGCAAATAAAATTTCTTTTACTCCTTTTTGTGGCAAGATTA
TTTTTCCTTTCCCTGATTTCTGCATTTTCTGCTTGTAAATTGGTGGCATC
TGTTGTTAAGTTTGTTGGTAGAATTATTTCATCAAGTTCAATTTTAATAT
CAAAAGAGTCGGGTTGATGCTGAGAATCGGATACCTCTTCGACAGGGGCC
AAAGAATTATTATCCTCTTCAATCTTTATCTTCATTGATATATCATAATT
TATGTTTGTATCAACAAATTCATGTTTTTCCTCTCCAAATAAATCAAAAT
TAGCATCCTCTGGACCAATATTGAGTGTAACCGAATTCATATAATTTTTG
TCACGTTCCATTTCATTGAAAAACTCGTCGATCTCACTTTTCATATTAAT
AGTTTTCTTTTTACTGTCTTTATTTTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024783XLOC_024783Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040684-exon-sc0002523-1575043694:12554..12717TCONS_00040684-exon-sc0002523-1575043694:12554..12717Clytia hemisphaericaexon
TCONS_00040684-exon-sc0002523-1575043694:588..1173TCONS_00040684-exon-sc0002523-1575043694:588..1173Clytia hemisphaericaexon
TCONS_00040684-exon-sc0002523-1510915933:12554..12717TCONS_00040684-exon-sc0002523-1510915933:12554..12717Clytia hemisphaericaexon
TCONS_00040684-exon-sc0002523-1510915933:588..1173TCONS_00040684-exon-sc0002523-1510915933:588..1173Clytia hemisphaericaexon
TCONS_00040684-exon-sc0002523-1491911889:12554..12717TCONS_00040684-exon-sc0002523-1491911889:12554..12717Clytia hemisphaericaexon
TCONS_00040684-exon-sc0002523-1491911889:588..1173TCONS_00040684-exon-sc0002523-1491911889:588..1173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002523supercontigsc0002523:588..12717 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.62182	5.714	2.81468	3.11668	1.4962	0.609203	0.896989	0.866115	0.522887	0.0869085	0.0753888	0.37845	0.430919	0.207449	1.38123	0.851161	0.149946	1.2266	0.0415828	0.12858	2.09243	2.0763	4.19612	7.17331	0.00356355	0.365887	1.25409	0.441663	3.57718	6.04792
Blast
[Close]
BLAST of TCONS_00040684 vs. Swiss-Prot (Human)
Match: ZKSC4 (Zinc finger protein with KRAB and SCAN domains 4 OS=Homo sapiens GN=ZKSCAN4 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 9.425e-35
Identity = 79/226 (34.96%), Postives = 121/226 (53.54%), Query Frame = -1 
Query:    1 MNSVTLNIGPEDANFD-----LFGEEKHEFVDTNINYDISMKIKIEEDNNSLAPVEEVSDSQHQPDSFDIKI-ELDEIILPTNLTTDATNLQAENAEIRERKNNLATKRSKRNFICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKCEECGKSFRSKYLLKNHLREHTGEPLSRCQECGKYFKTKSDSMKHKRMHTGEKPF 660
            M  V L + P     D     L+ +EK E    N +  +S+  +I+  +  L PV+++ + +H       KI  L E I    + T A   + E    R++KN + ++R      C ECGK+F  +  L +H RIHTGE+P++C+DCGK F   S+L +H ++H+  + ++CEECGK F     L  H R HTGE    C +CGK F      ++H ++HTGEKP+
Sbjct:  223 MEDVALTLTPGWTQLDSSQVNLYRDEKQE----NHSSLVSLGGEIQTKSRDLPPVKKLPEKEHG------KICHLREDI--AQIPTHAEAGEQEGRLQRKQKNAIGSRR----HYCHECGKSFAQSSGLTKHRRIHTGEKPYECEDCGKTFIGSSALVIHQRVHTGEKPYECEECGKVFSHSSNLIKHQRTHTGEKPYECDDCGKTFSQSCSLLEHHKIHTGEKPY 432

HSP 2 Score: 92.8189 bits (229), Expect = 2.970e-21
Identity = 50/144 (34.72%), Postives = 76/144 (52.78%), Query Frame = -1 
Query:    1 SKRNFICKECGKAFKFNCDLKRHFRIHTGERPFKCQDCGKCFTRQSSLNVHVKIHSDIESFKCEECGKSFRSKYLLKNHLREH--------------------------TGEPLS-RCQECGKYFKTKSDSMKHKRMHTGEKPF 351
             ++ + C+ECGK F  + +L +H R HTGE+P++C DCGK F++  SL  H KIH+  + ++C  CGK+FR    L  H R H                          T  P+S +C EC + F      ++H+++HTGEKP+
Sbjct:  372 GEKPYECEECGKVFSHSSNLIKHQRTHTGEKPYECDDCGKTFSQSCSLLEHHKIHTGEKPYQCNMCGKAFRRNSHLLRHQRIHGDKNVQNPEHGESWESQGRTESQWENTEAPVSYKCNECERSFTRNRSLIEHQKIHTGEKPY 515
The following BLAST results are available for this feature:
BLAST of TCONS_00040684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZKSC49.425e-3534.96Zinc finger protein with KRAB and SCAN domains 4 O... [more]
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