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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040680 ID=TCONS_00040680|Name=TCONS_00040680|organism=Clytia hemisphaerica|type=transcript|length=574bpRun BLAST on NCBI transcript from alignment at sc0002523:9276..13354+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00040680 ID=TCONS_00040680|Name=TCONS_00040680|organism=Clytia hemisphaerica|type=transcript|length=4079bp|location=Sequence derived from alignment at sc0002523:9276..13354+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00040680 vs. Swiss-Prot (Human)
Match: ZN431 (Zinc finger protein 431 OS=Homo sapiens GN=ZNF431 PE=2 SV=2) HSP 1 Score: 153.295 bits (386), Expect = 2.759e-43 Identity = 78/162 (48.15%), Postives = 99/162 (61.11%), Query Frame = 1
Query: 1 TGQKPFKCEECGKCFQRKEILKIHMRIHTGQKPLKCEECGKCFQRKDILKFHIRIHTGEKPFKCQECGKRFSQRGNVTRHSNVHDGVKSFKCKACDKCFSRKDTLNFHSKTHKRIKHVQIEEKEKPFRCNKCCKCFNSLSNFTAHIKSHSKEIVQPDGKSES 486
TG+KP+KCEECGK F R L H IHTG+KP KCEECGK F + IL H RIHTGEKP+KC+ECGK F++ N+T+H +H G KS+KC+ C K F++ TL H K H R +KP+ C +C FN SN S+ +E +Q ES
Sbjct: 423 TGEKPYKCEECGKAFNRSPQLTAHKIIHTGEKPYKCEECGKAFSQSSILTTHKRIHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGEKSYKCEECGKAFNQSSTLTKHRKIHTR---------QKPYNCEECDNTFNQSSNLIKQNNSYWRETLQMSRMWES 575 HSP 2 Score: 144.821 bits (364), Expect = 3.293e-40 Identity = 77/171 (45.03%), Postives = 95/171 (55.56%), Query Frame = 1
Query: 1 TGQKPFKCEECGKCFQRKEILKIHMRIHTGQKPLKCEECGKCFQRKDILKFHIRIHTGEKPFKCQECGKRFSQRGNVTRHSNVHDGVKSFKCKACDKCFSRKDTLNFHSKTH-------------------KRIKHVQIEEKEKPFRCNKCCKCFNSLSNFTAHIKSHSKE 456
TG+KPFKCEECGK F++ L H IHTG+KP +CEECGK F R L H IHTGEKP+KC+ECGK F+Q ++ H +H G K +KC+ CDK F+R L H H KH +I EKP++C C K FN SN T H H+ E
Sbjct: 255 TGEKPFKCEECGKAFKQSSTLTTHKIIHTGEKPYRCEECGKAFNRSSHLTTHKIIHTGEKPYKCEECGKAFNQSSTLSTHKFIHAGEKPYKCEECDKAFNRFSYLTKHKIIHTGEKSYKCEECGKGFNWSSTLTKHKRIHTGEKPYKCEVCGKAFNESSNLTTHKMIHTGE 425 HSP 3 Score: 140.198 bits (352), Expect = 1.194e-38 Identity = 73/152 (48.03%), Postives = 89/152 (58.55%), Query Frame = 1
Query: 1 TGQKPFKCEECGKCFQRKEILKIHMRIHTGQKPLKCEECGKCFQRKDILKFHIRIHTGEKPFKCQECGKRFSQRGNVTRHSNVHDGVKSFKCKACDKCFSRKDTLNFHSKTHKRIKHVQIEEKEKPFRCNKCCKCFNSLSNFTAHIKSHSKE 456
TG+KP+KCE CGK F L H IHTG+KP KCEECGK F R L H IHTGEKP+KC+ECGK FSQ +T H +H G K +KC+ C K F+R L KH I EK ++C +C K FN S T H K H+++
Sbjct: 395 TGEKPYKCEVCGKAFNESSNLTTHKMIHTGEKPYKCEECGKAFNRSPQLTAHKIIHTGEKPYKCEECGKAFSQSSILTTHKRIHTGEKPYKCEECGKAFNRSSNL---------TKHKIIHTGEKSYKCEECGKAFNQSSTLTKHRKIHTRQ 537 HSP 4 Score: 137.502 bits (345), Expect = 1.067e-37 Identity = 74/152 (48.68%), Postives = 90/152 (59.21%), Query Frame = 1
Query: 1 TGQKPFKCEECGKCFQRKEILKIHMRIHTGQKPLKCEECGKCFQRKDILKFHIRIHTGEKPFKCQECGKRFSQRGNVTRHSNVHDGVKSFKCKACDKCFSRKDTLNFHSKTHKRIKHVQIEEKEKPFRCNKCCKCFNSLSNFTAHIKSHSKE 456
TG+K +KCEECGK F L H RIHTG+KP KCE CGK F L H IHTGEKP+KC+ECGK F++ +T H +H G K +KC+ C K FS+ L THKR I EKP++C +C K FN SN T H H+ E
Sbjct: 367 TGEKSYKCEECGKGFNWSSTLTKHKRIHTGEKPYKCEVCGKAFNESSNLTTHKMIHTGEKPYKCEECGKAFNRSPQLTAHKIIHTGEKPYKCEECGKAFSQSSILT----THKR-----IHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGE 509 HSP 5 Score: 133.265 bits (334), Expect = 4.309e-36 Identity = 68/152 (44.74%), Postives = 85/152 (55.92%), Query Frame = 1
Query: 1 TGQKPFKCEECGKCFQRKEILKIHMRIHTGQKPLKCEECGKCFQRKDILKFHIRIHTGEKPFKCQECGKRFSQRGNVTRHSNVHDGVKSFKCKACDKCFSRKDTLNFHSKTHKRIKHVQIEEKEKPFRCNKCCKCFNSLSNFTAHIKSHSKE 456
TG+KP+KCEECGK F + L H IH G+KP KCEEC K F R L H IHTGEK +KC+ECGK F+ +T+H +H G K +KC+ C K F+ L H H EKP++C +C K FN TAH H+ E
Sbjct: 311 TGEKPYKCEECGKAFNQSSTLSTHKFIHAGEKPYKCEECDKAFNRFSYLTKHKIIHTGEKSYKCEECGKGFNWSSTLTKHKRIHTGEKPYKCEVCGKAFNESSNLTTHKMIHT---------GEKPYKCEECGKAFNRSPQLTAHKIIHTGE 453 HSP 6 Score: 130.568 bits (327), Expect = 3.983e-35 Identity = 66/147 (44.90%), Postives = 89/147 (60.54%), Query Frame = 1
Query: 16 FKCEECGKCFQRKEILKIHMRIHTGQKPLKCEECGKCFQRKDILKFHIRIHTGEKPFKCQECGKRFSQRGNVTRHSNVHDGVKSFKCKACDKCFSRKDTLNFHSKTHKRIKHVQIEEKEKPFRCNKCCKCFNSLSNFTAHIKSHSKE 456
++CEECGK F+ L H RIHTG+KP KCEECGK F++ L H IHTGEKP++C+ECGK F++ ++T H +H G K +KC+ C K F++ TL+ H H EKP++C +C K FN S T H H+ E
Sbjct: 232 YQCEECGKAFKWFSTLTRHKRIHTGEKPFKCEECGKAFKQSSTLTTHKIIHTGEKPYRCEECGKAFNRSSHLTTHKIIHTGEKPYKCEECGKAFNQSSTLSTHKFIHA---------GEKPYKCEECDKAFNRFSYLTKHKIIHTGE 369 HSP 7 Score: 123.25 bits (308), Expect = 1.641e-32 Identity = 67/152 (44.08%), Postives = 85/152 (55.92%), Query Frame = 1
Query: 1 TGQKPFKCEECGKCFQRKEILKIHMRIHTGQKPLKCEECGKCFQRKDILKFHIRIHTGEKPFKCQECGKRFSQRGNVTRHSNVHDGVKSFKCKACDKCFSRKDTLNFHSKTHKRIKHVQIEEKEKPFRCNKCCKCFNSLSNFTAHIKSHSKE 456
TG+KPFKC++CGK F L H RIH + +CEECGK F+ L H RIHTGEKPFKC+ECGK F Q +T H +H G K ++C+ C K F+R L H H EKP++C +C K FN S + H H+ E
Sbjct: 199 TGKKPFKCKKCGKSFCMLLHLSQHKRIHIRENSYQCEECGKAFKWFSTLTRHKRIHTGEKPFKCEECGKAFKQSSTLTTHKIIHTGEKPYRCEECGKAFNRSSHLTTHKIIHT---------GEKPYKCEECGKAFNQSSTLSTHKFIHAGE 341 The following BLAST results are available for this feature:
BLAST of TCONS_00040680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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