|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040673 ID=TCONS_00040673|Name=TCONS_00040673|organism=Clytia hemisphaerica|type=transcript|length=962bp
CAAATGAGCCACTTTAAGGCAGTCCATTTTGAAATCGGACCATTCATTAG
ACGTTGCAAATACCATTGCATTGACAGCTTCTTTCAAGCTCATGGAAAGT
TCTTCAAGCTTGTTTGCTAAAAGGTTTGCAATGTCcctttttctgtgttt
tgtaAGCTCTGGTTTGTTGAACCCtgttaaaattttgaatcctgGTGGAA
ATTCTCTGCTCGATTCATGCTCAATTTTATCGGTATGTCCATCAATATAC
CACAAGGATTCAGAAAACTTTGTCATGAACTTTGAGATGGTAGTGGCTGC
TGAACTCTCTAAGCGACAGTTTTTCTTCTCGAGATACAAAATCTCGTTAT
ATTGttcttcctttttatttttcGGGCTTTCAATCGTCTTTGGCAAAAGG
TCTTTCGCCTGAGCCCTTGCCGAGCTCATTAAAACTTGCATCGCTGTCAA
TTGTCTAGGAGGGGGAGGAGGCTCGACGCAACGATTGCAATGTTCACAGT
GTTCGACAAATACCGTGAAGTAAAGCATTCCGAAAACTTTCGCCTTTTGA
ATAGCATCAGAGTTCGGAGCGGCGCTGATCTCTTCTAAGAGCCTGGATGA
CGTGGACGCCCTACAGGAGGTGACGAATAAATTTGAGCATGATTTGCTAG
GCAGTTTAACATGTGAAAACTTGCCATTTTTTATGTCTTCAAATAACTCA
ACGATAGTACATACAGgtttaaaaatattaacaaacgACCATACTATTAA
AGTATCTTTCTTCTGATCGAATAAACGAACGCATATTGATGTTGCCATTT
CAAATCATAATTTTACGAAACGATATCAAACAACTCCAAAAACTTGTGTT
GTGATGAGTGGCTGacaagcaaaaacaaaacattcgattgagAGCGCGGG
AAAAAATAGAATGTTTTTAAACGTTCGATTTGGTAGTGTAGATCGGGAAT
TGTCTTTTTTGC Run BLAST on NCBI protein sequence of TCONS_00040673-protein >TCONS_00040673-protein ID=TCONS_00040673-protein|Name=TCONS_00040673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MATSICVRLFDQKKDTLIVWSFVNIFKPVCTIVELFEDIKNGKFSHVKLP
SKSCSNLFVTSCRASTSSRLLEEISAAPNSDAIQKAKVFGMLYFTVFVEH
CEHCNRCVEPPPPPRQLTAMQVLMSSARAQAKDLLPKTIESPKNKKEEQY
NEILYLEKKNCRLESSAATTISKFMTKFSESLWYIDGHTDKIEHESSREF
PPGFKILTGFNKPELTKHRKRDIANLLANKLEELSMSLKEAVNAMVFATS
NEWSDFKMDCLKVAHL Run BLAST on NCBI transcript from alignment at sc0002520:5190..6151 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040673 ID=TCONS_00040673|Name=TCONS_00040673|organism=Clytia hemisphaerica|type=transcript|length=962bp|location=Sequence derived from alignment at sc0002520:5190..6151 (Clytia hemisphaerica)
GCAAAAAAGACAATTCCCGATCTACACTACCAAATCGAACGTTTAAAAAC
ATTCTATTTTTTCCCGCGCTctcaatcgaatgttttgtttttgcttgtCA
GCCACTCATCACAACACAAGTTTTTGGAGTTGTTTGATATCGTTTCGTAA
AATTATGATTTGAAATGGCAACATCAATATGCGTTCGTTTATTCGATCAG
AAGAAAGATACTTTAATAGTATGGTcgtttgttaatatttttaaacCTGT
ATGTACTATCGTTGAGTTATTTGAAGACATAAAAAATGGCAAGTTTTCAC
ATGTTAAACTGCCTAGCAAATCATGCTCAAATTTATTCGTCACCTCCTGT
AGGGCGTCCACGTCATCCAGGCTCTTAGAAGAGATCAGCGCCGCTCCGAA
CTCTGATGCTATTCAAAAGGCGAAAGTTTTCGGAATGCTTTACTTCACGG
TATTTGTCGAACACTGTGAACATTGCAATCGTTGCGTCGAGCCTCCTCCC
CCTCCTAGACAATTGACAGCGATGCAAGTTTTAATGAGCTCGGCAAGGGC
TCAGGCGAAAGACCTTTTGCCAAAGACGATTGAAAGCCCgaaaaataaaa
aggaagaaCAATATAACGAGATTTTGTATCTCGAGAAGAAAAACTGTCGC
TTAGAGAGTTCAGCAGCCACTACCATCTCAAAGTTCATGACAAAGTTTTC
TGAATCCTTGTGGTATATTGATGGACATACCGATAAAATTGAGCATGAAT
CGAGCAGAGAATTTCCACcaggattcaaaattttaacaGGGTTCAACAAA
CCAGAGCTtacaaaacacagaaaaaggGACATTGCAAACCTTTTAGCAAA
CAAGCTTGAAGAACTTTCCATGAGCTTGAAAGAAGCTGTCAATGCAATGG
TATTTGCAACGTCTAATGAATGGTCCGATTTCAAAATGGACTGCCTTAAA
GTGGCTCATTTG Coding sequence (CDS) from alignment at sc0002520:5190..6151 >TCONS_00040673 ID=TCONS_00040673|Name=TCONS_00040673|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at sc0002520:5190..6151 (Clytia hemisphaerica)
ATGGCAACATCAATATGCGTTCGTTTATTCGATCAGAAGAAAGATACTTT
AATAGTATGGTcgtttgttaatatttttaaacCTGTATGTACTATCGTTG
AGTTATTTGAAGACATAAAAAATGGCAAGTTTTCACATGTTAAACTGCCT
AGCAAATCATGCTCAAATTTATTCGTCACCTCCTGTAGGGCGTCCACGTC
ATCCAGGCTCTTAGAAGAGATCAGCGCCGCTCCGAACTCTGATGCTATTC
AAAAGGCGAAAGTTTTCGGAATGCTTTACTTCACGGTATTTGTCGAACAC
TGTGAACATTGCAATCGTTGCGTCGAGCCTCCTCCCCCTCCTAGACAATT
GACAGCGATGCAAGTTTTAATGAGCTCGGCAAGGGCTCAGGCGAAAGACC
TTTTGCCAAAGACGATTGAAAGCCCgaaaaataaaaaggaagaaCAATAT
AACGAGATTTTGTATCTCGAGAAGAAAAACTGTCGCTTAGAGAGTTCAGC
AGCCACTACCATCTCAAAGTTCATGACAAAGTTTTCTGAATCCTTGTGGT
ATATTGATGGACATACCGATAAAATTGAGCATGAATCGAGCAGAGAATTT
CCACcaggattcaaaattttaacaGGGTTCAACAAACCAGAGCTtacaaa
acacagaaaaaggGACATTGCAAACCTTTTAGCAAACAAGCTTGAAGAAC
TTTCCATGAGCTTGAAAGAAGCTGTCAATGCAATGGTATTTGCAACGTCT
AATGAATGGTCCGATTTCAAAATGGACTGCCTTAAAGTGGCTCATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040673-exon-sc0002520-1491911889:5190..6151 | TCONS_00040673-exon-sc0002520-1491911889:5190..6151 | Clytia hemisphaerica | exon |
| TCONS_00040673-exon-sc0002520-1510915933:5190..6151 | TCONS_00040673-exon-sc0002520-1510915933:5190..6151 | Clytia hemisphaerica | exon |
| TCONS_00040673-exon-sc0002520-1575043694:5190..6151 | TCONS_00040673-exon-sc0002520-1575043694:5190..6151 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002520 | supercontig | sc0002520:5190..6151 . |
Blast
The following BLAST results are available for this feature:
|
