TCONS_00040659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040659
Unique NameTCONS_00040659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length202

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040659 ID=TCONS_00040659|Name=TCONS_00040659|organism=Clytia hemisphaerica|type=transcript|length=202bp
AGGAGAAATGAGTCAAGCTGCGAAGAAGACAATGATATTGACAATTCGAA
ATCTGAGAAAATTAATGTTACTCGACAAAAATGTACTGATGCAAATCTCT
CAAGAAAATGCTTCATCAACCTATCACCGGAAGAAAGtaaggaaaaaaaa
tcgattCTCGTATTATGGACCAATGCTTTCATGAGATCTGCATTAAGTTT
CA
Run BLAST on NCBI

transcript from alignment at sc0002511:7167..7712+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040659 ID=TCONS_00040659|Name=TCONS_00040659|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at sc0002511:7167..7712+ (Clytia hemisphaerica)
AGGAGAAATGAGTCAAGCTGCGAAGAAGACAATGATATTGACAATTCGAA
ATCTGAGAAAATTAATGTTACTCGACAAAAATGTACTGATGGTAAATGAT
TTACCTAATCTTTCGTTACTTTTTAGTTTAATTAAAGCGAGATAAAGAAG
CTTTCCTTTAACGTAGCGACATGAGAGAAATGGAAGTAATTGCTTACTGA
ACCAGACTGAACAATAAAATAAGACCACCAATAAGGTTCGCGcattcaaa
attctttcaatgtTGACCGATTTTAGATAGAAATTATTCGCAACTAACAA
AAGACAAATAAAATACATGGGAATACATTGGACACTAACCGCGAGGAGGA
CCTTTTTTCTTACCTAGCTATATACACATCACTTTAAAACCAGACAAGTA
TATTCTACAGCAAAGTTATTGTTTTCGAATTTTAGCAAATCTCTCAAGAA
AATGCTTCATCAACCTATCACCGGAAGAAAGtaaggaaaaaaaatcgatt
CTCGTATTATGGACCAATGCTTTCATGAGATCTGCATTAAGTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024768XLOC_024768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040659-exon-sc0002511-1491911889:7167..7257TCONS_00040659-exon-sc0002511-1491911889:7167..7257Clytia hemisphaericaexon
TCONS_00040659-exon-sc0002511-1510915933:7167..7257TCONS_00040659-exon-sc0002511-1510915933:7167..7257Clytia hemisphaericaexon
TCONS_00040659-exon-sc0002511-1575043694:7167..7257TCONS_00040659-exon-sc0002511-1575043694:7167..7257Clytia hemisphaericaexon
TCONS_00040659-exon-sc0002511-1491911889:7602..7712TCONS_00040659-exon-sc0002511-1491911889:7602..7712Clytia hemisphaericaexon
TCONS_00040659-exon-sc0002511-1510915933:7602..7712TCONS_00040659-exon-sc0002511-1510915933:7602..7712Clytia hemisphaericaexon
TCONS_00040659-exon-sc0002511-1575043694:7602..7712TCONS_00040659-exon-sc0002511-1575043694:7602..7712Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002511supercontigsc0002511:7167..7712 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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