TCONS_00040635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040635
Unique NameTCONS_00040635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040635 ID=TCONS_00040635|Name=TCONS_00040635|organism=Clytia hemisphaerica|type=transcript|length=748bp
CGAAtttcggaaaatcgggaaatgtAGTACACTCTGTATTTTGCCGAACG
AGttcaattttgatattttgcgcCGGTAAATATCGGTCATGCTATATAAT
GCTTCGATAAAGATGGTAGAGTAAGCTACATTCATCCTTTTACATCCAAC
AGCCGAAGGCAAAGTTATCACAGTCATTCATTGAACTGGTGAAGGAAGAA
AGCACTACATCATTGGTGACGGACTTCACAGTTTATGAAAATATGACGTT
TTTAGTAAATATGGTTGGAATACTATTAACGTATcatattttctttaaag
acAACCTAAGGTTTCAACATGGTTAGAATCAGCGTGTTAAATGACTGCCT
TAAAAGCATGGTCAATGCTGAACGAAGAGGAAAACGACAAGTCTTAATCA
GACCAGCATCAAAAGTTGTCATGAAATTCTTAACTGTCATGATGAAACAT
GGATACATTGGCGAATTTGAATACATTGATGACCACAGAGCTGGAAAGAT
TGTTGTCAACCTTAATGGAAGAATTAACAAGTGTGGTGTTATTTCCCCAC
GATTTGATGTCAAATTGAAGGATATTGAAAAATGGTCTAGTTACTTGTTG
CCATCTCGTCAGTTTGGATTTATCGTAATGACCACATCAGCTGGAATCAT
GGATCATGAGGAAGCCAGGAGGAAAAACACTGGTGGAAAAATTTTAGGAT
ATTTCTACTAGAAGaattctgaaaaataaagatcattttgttgttgtt
Run BLAST on NCBI

transcript from alignment at sc0002504:17189..19930+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040635 ID=TCONS_00040635|Name=TCONS_00040635|organism=Clytia hemisphaerica|type=transcript|length=2742bp|location=Sequence derived from alignment at sc0002504:17189..19930+ (Clytia hemisphaerica)
CGAAtttcggaaaatcgggaaatgtAGTACACTCTGTATTTTGCCGAACG
AGttcaattttgatattttgcgcCGGTAAATATCGGTCATGCTATATAAT
GCTTCGATAAAGATGGTAGAGTAAGCTACATTCATCCTTTTACATCCAAC
AGCCGAAGGCAAAGGTAAGCTCTAAGACCACGAAGGCAATATCTATCTAT
ATCTTGGTCATCCGACCACTACATCAAGTAATTTTTGAATCCAAACGCGA
TGATGACAACACAGGTATTGATAGTTCCTGAATTTCAGTGACGAAATACC
CCTTGGCTGTCTGAGCATTCATTTTAATTCTTTGGAATAAGGAGTAGCTG
TTGATTTTTGTGtcattgatttttctaaaaactgCTGATACTATCATTTA
GTTATCACAGTCATTCATTGAACTGGTGAAGGAAGAAAGCACTACATCAT
TGGTGACGGACTTCACAGTTTATGAAAATATGACGTTTTTAGTAAATATG
GTTGGAATACTATTAACGTATcatattttctttaaagacAACCTAAGGTT
TCAACATGGTTAGAATCAGCGTGTTAAATGACTGCCTTAAAAGCATGGTC
AATGCTGAACGAAGAGGAAAACGACAAGTCTTAATCAGACCAGCATCAAA
AGTTGTCATGAAATTCTTAACTGTCATGATGAAACATGGTAAGCTGAGTT
TTTATACTGAGGCAAAAATAACAAATATAGTGTTTCTGGTAATTGACCGG
GTGAACAAAAGATATTTTCTGACCCAGCCGCAGATCAAGTTTTGATCGTA
AGTAGTtcatacattagtattcagggcttactttatactgtttgtacata
aaagatCTTTGAAGtttatttcaatgatcttaaaaaCAGCATAGAAAATG
TTTTCTGGCCGGTTGCATGACAGCTTTGTTCCTTCACCCACATTTTGGAA
acactacacttttttattttcgcctgatTAACTTTTTTTACATTGACTTT
AGTTACATACTTTCTTATGATGAATTTAGCATATTCTGACACCTCTTGTC
CGAGGCTTTTTGCCAGTGAACAGAACCAGCTACTTATGCCTGAGGAAAGT
GATATTGCTTTTATATTTGACTCCAGTAACTAAATAAATACAGCTTGTTT
GGCCTGTAGATTCGTCCTGtgttaggggtcactcacaaatcgaGTTAAGG
TTAGAAAAACGCCAATTGACGTTAGTGGGTGGTTAGATTAAAGGTTGTTT
TAAATCAAGAACATCAATTTTTATTCTTGTCGTGTTTCTGTTTAATCGCT
TTGtctgttttgaaaaccaaaacaaacagcccTATGTTcatgtcttttct
ttgtttgacgACCCAAACGGCCCTTGAATCTAACCTAAAATAGATTTGTG
ATTGACCCCTTATCCCATCATATTTACCATTGATATTTTGAAGTTAGCAG
CTTTTGTGGCTAATTGCATTTAAGGCCAGTTTCAACTTGCATGTGCTGTG
ATTGCACCTCTTGGATTGCTCCTTTTCGTTTGGAAAAATGATTTTAGCAT
AAATGGATccataaaaaattaaatttccaatTGATATGTTAGATCTCGTC
AAtgagattgttttgtttttcttttgacccATAGTGTGGAAACTGTACTC
AAAAAGTGTGATAAAGTTCTAGTTATATATTTGCATAAGACATAAAATAC
CTGATCTCGCAAATTCTATGTAAAATTTACAGGGCACATAAGTGGAGACT
GGTCTTAAGTGATGGCTATCTGCAATTCAAGAGGGCTAATGCCAAATTAT
TTCTCAAACCTAccttaaaagtttttgtttaacACATTTTTGTTCTCTAC
TTTTTTTGTCACTAGTAATGTAAATGTAACAAAGTCTTTCTTTTTATAGA
GGATCAGTAGTGATGACTTGCACTGGGTTATGAATTGAATGATTCGCTCA
AGCATGACTGAACTGATCTAAACAAATCTAGTTTTGCAATCAATGGATCC
TTTCCATTTATAAAatgtaatttgaaatttgttcttttttcaattaGGAT
ACATTGGCGAATTTGAATACATTGATGACCACAGAGCTGGAAAGATTGTT
GTCAACCTTAATGGAAGAATTAACAAGGTATCTTGAGAAAACTTGTAAAT
TTCATGTAAACTAAATTTCAATGATGACCTACAAGTAAAAGACTAGAGTC
TCAGAAAATCATGTTGAGACGTCCTTGCACAACTGACGAAATTGATCAGC
TTTAAATGCACATAGTTAGCTACAGTAGGTGAACAGTCTtataaaacaat
atttttccatttcacAGTGTGGTGTTATTTCCCCACGATTTGATGTCAAA
TTGAAGGATATTGAAAAATGGTCTAGTTACTTGTTGCCATCTCGTCAGTT
TGGGTAAGTCTTGTTGCTTTCACAATTCCTCCTggttttgaattgatttt
ttaattaaatgcTAAGCACAATGATGAAATGGGTAAATGCCAGTTCTGCT
GCTGATACGTGATGTGGAACTTACCCTCAATATCTGAGTAGCTTTAGAAC
TTTCATGCCTAATAAAATATACATTTTGACATATTTTAACCTTGTCTCTC
TTTCTTAACAGATTTATCGTAATGACCACATCAGCTGGAATCATGGATCA
TGAGGAAGCCAGGAGGAAAAACACTGGTGGAAAAATTTTAGGATATTTCT
ACTAGAAGaattctgaaaaataaagatcattttgttgttgtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024745XLOC_024745Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040635-exon-sc0002504-1491911889:17189..17352TCONS_00040635-exon-sc0002504-1491911889:17189..17352Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1510915933:17189..17352TCONS_00040635-exon-sc0002504-1510915933:17189..17352Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1575043694:17189..17352TCONS_00040635-exon-sc0002504-1575043694:17189..17352Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1491911889:17590..17876TCONS_00040635-exon-sc0002504-1491911889:17590..17876Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1510915933:17590..17876TCONS_00040635-exon-sc0002504-1510915933:17590..17876Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1575043694:17590..17876TCONS_00040635-exon-sc0002504-1575043694:17590..17876Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1491911889:19236..19315TCONS_00040635-exon-sc0002504-1491911889:19236..19315Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1510915933:19236..19315TCONS_00040635-exon-sc0002504-1510915933:19236..19315Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1575043694:19236..19315TCONS_00040635-exon-sc0002504-1575043694:19236..19315Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1491911889:19506..19591TCONS_00040635-exon-sc0002504-1491911889:19506..19591Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1510915933:19506..19591TCONS_00040635-exon-sc0002504-1510915933:19506..19591Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1575043694:19506..19591TCONS_00040635-exon-sc0002504-1575043694:19506..19591Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1491911889:19800..19930TCONS_00040635-exon-sc0002504-1491911889:19800..19930Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1510915933:19800..19930TCONS_00040635-exon-sc0002504-1510915933:19800..19930Clytia hemisphaericaexon
TCONS_00040635-exon-sc0002504-1575043694:19800..19930TCONS_00040635-exon-sc0002504-1575043694:19800..19930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002504supercontigsc0002504:17189..19930 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
678.091	668.579	699.269	735.568	766.911	588.292	810.033	868.364	1186.63	944.603	1097.56	1365.37	1839.22	1575.2	1822.1	1960.28	1805.15	2049.46	877.681	1061.23	1906.51	1781.15	1651.98	1446.97	1120.35	1160.4	1724.81	1742.38	1254.29	1507.86
Blast
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BLAST of TCONS_00040635 vs. Swiss-Prot (Human)
Match: RS15A (40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 7.198e-76
Identity = 107/130 (82.31%), Postives = 122/130 (93.85%), Query Frame = 1 
Query:  319 MVRISVLNDCLKSMVNAERRGKRQVLIRPASKVVMKFLTVMMKHGYIGEFEYIDDHRAGKIVVNLNGRINKCGVISPRFDVKLKDIEKWSSYLLPSRQFGFIVMTTSAGIMDHEEARRKNTGGKILGYFY 708
            MVR++VL D LKS+ NAE+RGKRQVLIRP SKV+++FLTVMMKHGYIGEFE IDDHRAGKIVVNL GR+NKCGVISPRFDV+LKD+EKW + LLPSRQFGFIV+TTSAGIMDHEEARRK+TGGKILG+F+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
The following BLAST results are available for this feature:
BLAST of TCONS_00040635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS15A7.198e-7682.3140S ribosomal protein S15a OS=Homo sapiens GN=RPS1... [more]
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