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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040616 ID=TCONS_00040616|Name=TCONS_00040616|organism=Clytia hemisphaerica|type=transcript|length=2294bpRun BLAST on NCBI protein sequence of TCONS_00040616-protein >TCONS_00040616-protein ID=TCONS_00040616-protein|Name=TCONS_00040616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=700bp MADLEAVLADVSYLMAMEKSKSTPAARASKKIVLPDASVYSVMHKYLNERRun BLAST on NCBI transcript from alignment at sc0002496:1..20550- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00040616 ID=TCONS_00040616|Name=TCONS_00040616|organism=Clytia hemisphaerica|type=transcript|length=20550bp|location=Sequence derived from alignment at sc0002496:1..20550- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002496:1..20550- >TCONS_00040616 ID=TCONS_00040616|Name=TCONS_00040616|organism=Clytia hemisphaerica|type=CDS|length=50472bp|location=Sequence derived from alignment at sc0002496:1..20550- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00040616 vs. Swiss-Prot (Human)
Match: ARBK2 (Beta-adrenergic receptor kinase 2 OS=Homo sapiens GN=GRK3 PE=1 SV=2) HSP 1 Score: 943.34 bits (2437), Expect = 0.000e+0 Identity = 453/679 (66.72%), Postives = 551/679 (81.15%), Query Frame = 2
Query: 167 MADLEAVLADVSYLMAMEKSKSTPAARASKKIVLPDASVYSVMHKYLNERDEVTFDHIFNQRLGFLLFQEYCEQLCDEPVPQIKFYEAIKEYERLQSFDDRLVRAREIFDTYIMKELLSCSHSFTLNAIEHVRKLLAVGEVPVALFEPYDKEIKDSLRGRIFSKFLKSEKYVRYLQWKNLELNIHLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYALKSLDKKRIKMKQGETLSLNERIMLSLV---DCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLTQHGVFDEKSVLFYASEVILGLEHMHNRFICYRDLKPANILLDESGHVRISDLGLACDFSKKRPHACVGTHGYMAPEVLQKSVAYDSSADWFSLGCMLYKLLRGHSPFRQQKTKDKHEIDKLTLTMDVKFPDEFSDVMKSLLGGLLQRNVPKRLGCQGKGSLEVKGHEYFKDLEWKQVELLKLTPPLIPPRGEVNAADAFDIGSFDEDDVKGVKLTEEDQSLYKNFNYMNSERWQYEIAETVFDVVNQETEKLEAKKRGK-QYMSILDINAQNGDCLLHGFLHKLGGPFQSVWTKKYFFLYPNRLEYRGEQAVSIFNSQKILLPLEDIRFVDEINYKNFRCIKIVLKDNRETLVLRAESETEFTEWFKEICKSYEEAQVQIKAGAKILKSNSSKTL 2191
MADLEAVLADVSYLMAMEKSK+TPAARASK+IVLP+ S+ SVM KYL ER+E+TFD IFNQ++GFLLF+++C +E VPQ+KFYE IKEYE+L + +DRL R+R+I+D YIMKELLSCSH F+ A+EHV+ L+ +V LF+PY +EI +SLRG IF KF++S+K+ R+ QWKN+ELNIHLTMN+FSVHRIIGRGGFGEVYGCRKADTGKMYA+K LDKKRIKMKQGETL+LNERIMLSLV DCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHL+QHGVF EK + FYA+E+ILGLEHMHNRF+ YRDLKPANILLDE GH RISDLGLACDFSKK+PHA VGTHGYMAPEVLQK AYDSSADWFSLGCML+KLLRGHSPFRQ KTKDKHEID++TLT++V+ PD FS +KSLL GLLQR+V KRLGC G GS EVK H +FK ++W+ V L K PPLIPPRGEVNAADAFDIGSFDE+D KG+KL + DQ LYKNF + SERWQ E+ ETV++ VN +T+K+EA+KR K + + + A DC++HG++ KLG PF + W ++YF+L+PNRLE+RGE S++ LL +E I V+E K+ +CI +K ++ VL+ ES+ EF +W KE+ ++++EAQ ++ K L S T+
Sbjct: 1 MADLEAVLADVSYLMAMEKSKATPAARASKRIVLPEPSIRSVMQKYLAERNEITFDKIFNQKIGFLLFKDFCLNEINEAVPQVKFYEEIKEYEKLDNEEDRLCRSRQIYDAYIMKELLSCSHPFSKQAVEHVQSHLSKKQVTSTLFQPYIEEICESLRGDIFQKFMESDKFTRFCQWKNVELNIHLTMNEFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHARISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVNVELPDTFSPELKSLLEGLLQRDVSKRLGCHGGGSQEVKEHSFFKGVDWQHVYLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLLDCDQELYKNFPLVISERWQQEVTETVYEAVNADTDKIEARKRAKNKQLGHEEDYALGKDCIMHGYMLKLGNPFLTQWQRRYFYLFPNRLEWRGEG-----ESRQNLLTMEQILSVEETQIKDKKCILFRIKGGKQ-FVLQCESDPEFVQWKKELNETFKEAQRLLRRAPKFLNKPRSGTV 673 The following BLAST results are available for this feature:
BLAST of TCONS_00040616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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