TCONS_00040606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040606
Unique NameTCONS_00040606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040606 ID=TCONS_00040606|Name=TCONS_00040606|organism=Clytia hemisphaerica|type=transcript|length=594bp
ATGTCTATGTTCTTCGTTCAGTTTGCAGCAAAGCAAGCTATAAAGTTAAT
GGAATCAAACCACTGATGATATTACCAACCAAACAATATTCAATCTCTAA
ACGATTGTTTGAGGAGGATTCGTCATCAGATGAGGAAGGTGAGAAATTTG
AATCTGAAGGAAGCGAAATATCCGAAGATGAAACTGATGATGAAAGCAAC
ATCCAAAAACTCAAGAATTGCTGGAAAGGCCTGGCACCGCCAACAAAAGA
GACTGGTAGATGGTATGCTGCCATCTACACCACcaagaaagcaaaaaggt
tGTATATTGGTTGTTTGTTGAGGAGATTCTTAAAAGATGAAGATGGCGCT
GTTGACTCAATTACGTTACACTGTCAAAGCCTAAAGTTAGGAGTGGCACT
GTTCTTGAAAACACCCCAGACCAACTTCCAGATATAAGCATTTTCCCAGT
TCATGACATCATAGCTGGGCCATTAAAGGTCATTCCCATTCGAgggaaaa
aaatgaacattccaGATTAtgatttaattgaaaatatgtttaaCAAAGTA
TCAGGACTAAACCGTCTAGCTTTAGTAAATATGATGTAATATCC
Run BLAST on NCBI

protein sequence of TCONS_00040606-protein

>TCONS_00040606-protein ID=TCONS_00040606-protein|Name=TCONS_00040606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
VYVLRSVCSKASYKVNGIKPLMILPTKQYSISKRLFEEDSSSDEEGEKFE
SEGSEISEDETDDESNIQKLKNCWKGLAPPTKETGRWYAAIYTTKKAKRL
YIGCLLRRFLKDEDGAVDSITLHCQSLKLGVALFLKTPQTNFQI
Run BLAST on NCBI

transcript from alignment at sc0002492:16493..17086

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040606 ID=TCONS_00040606|Name=TCONS_00040606|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at sc0002492:16493..17086 (Clytia hemisphaerica)
GGATATTACATCATATTTACTAAAGCTAGACGGTTTAGTCCTGATACTTT
GttaaacatattttcaattaaatcaTAATCtggaatgttcatttttttcc
cTCGAATGGGAATGACCTTTAATGGCCCAGCTATGATGTCATGAACTGGG
AAAATGCTTATATCTGGAAGTTGGTCTGGGGTGTTTTCAAGAACAGTGCC
ACTCCTAACTTTAGGCTTTGACAGTGTAACGTAATTGAGTCAACAGCGCC
ATCTTCATCTTTTAAGAATCTCCTCAACAAACAACCAATATACaaccttt
ttgctttcttgGTGGTGTAGATGGCAGCATACCATCTACCAGTCTCTTTT
GTTGGCGGTGCCAGGCCTTTCCAGCAATTCTTGAGTTTTTGGATGTTGCT
TTCATCATCAGTTTCATCTTCGGATATTTCGCTTCCTTCAGATTCAAATT
TCTCACCTTCCTCATCTGATGACGAATCCTCCTCAAACAATCGTTTAGAG
ATTGAATATTGTTTGGTTGGTAATATCATCAGTGGTTTGATTCCATTAAC
TTTATAGCTTGCTTTGCTGCAAACTGAACGAAGAACATAGACAT

Coding sequence (CDS) from alignment at sc0002492:16493..17086

>TCONS_00040606 ID=TCONS_00040606|Name=TCONS_00040606|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0002492:16493..17086 (Clytia hemisphaerica)
TTATATCTGGAAGTTGGTCTGGGGTGTTTTCAAGAACAGTGCCACTCCTA
ACTTTAGGCTTTGACAGTGTAACGTAATTGAGTCAACAGCGCCATCTTCA
TCTTTTAAGAATCTCCTCAACAAACAACCAATATACaacctttttgcttt
cttgGTGGTGTAGATGGCAGCATACCATCTACCAGTCTCTTTTGTTGGCG
GTGCCAGGCCTTTCCAGCAATTCTTGAGTTTTTGGATGTTGCTTTCATCA
TCAGTTTCATCTTCGGATATTTCGCTTCCTTCAGATTCAAATTTCTCACC
TTCCTCATCTGATGACGAATCCTCCTCAAACAATCGTTTAGAGATTGAAT
ATTGTTTGGTTGGTAATATCATCAGTGGTTTGATTCCATTAACTTTATAG
CTTGCTTTGCTGCAAACTGAACGAAGAACATAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024724XLOC_024724Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040606-proteinTCONS_00040606-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040606-exon-sc0002492-1491911889:16493..17086TCONS_00040606-exon-sc0002492-1491911889:16493..17086Clytia hemisphaericaexon
TCONS_00040606-exon-sc0002492-1510915933:16493..17086TCONS_00040606-exon-sc0002492-1510915933:16493..17086Clytia hemisphaericaexon
TCONS_00040606-exon-sc0002492-1575043694:16493..17086TCONS_00040606-exon-sc0002492-1575043694:16493..17086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002492supercontigsc0002492:16493..17086 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17383	0.299304	0	0.199784	0	0.125178	0.205435	0	0.558586	0.49009	0	0.328574	0.288032	0	0	0.203983	0.25381	0.287065	0.722041	0.31816	0.274742	0.425983	0	0.174	0.385978	0.856275	0.427173	0	0.107177	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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