TCONS_00040587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040587
Unique NameTCONS_00040587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1136

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040587 ID=TCONS_00040587|Name=TCONS_00040587|organism=Clytia hemisphaerica|type=transcript|length=1136bp
CGCTCAACTGCACTTTTTCTGACGATAAAGTCACTACACCCAGAATCAAA
GAATATATTGAATACTTCACCATTGACTTTGATTGACTGGAACATGTAGA
TTCCTCGGTCTGGGATGTCTCCACCTTGATCCTTAAAATCTGTTTGAACA
TTGTTGACTTCGATTTCTCCACTTGAGATTTCTGAGTAGAAGGATAATTT
GATGTCTCTGGAAAATGAAGGTAAGCTTGAATTTCTGGTAATGAATCTGG
ACTTGTACTTGTCCAATAGATCctgattttcatcaaaatgctTATGCTCT
TCACATATAAGGATGTCTTTCTTTTTGGGGTACTAGAAATGTGATCCATG
GAGGCAAACAAAATCTTGCTGGCATTTCCCTTCCTCATGTCTACCAACAT
TCCACTTAGCCCCTGGCGAAAGACATTGAAAGCAAAGACCCTTTTTGCGC
AACATTTGAAGTCTTTGGGCAGGTGTCTTCTCGACAAACTTTCGGCACGA
AAAGTATTGAATGACTTTGACTCCTCCCGGCCCTGTGGTAGCAACATGGT
CATCTTCCCCAGCAGCACTCCCACATAGAATGCAGATTTCATTATCAAAT
TGTCTGAATGATAGCCTGATAAGCCTGGGCCTTTTCGTTTTGGGGGTGCA
GATGGTGGATCCTCCCTTCCTGAGAGTCTAAGCTTTTGTTGTTGGATCTT
TAACTCCTTCTCTAAGAAGTCAATGAGGTTTTCCCACAACACTTTCCCAC
TCTGGTTGATCCCAATCGACTGTTCAAGCCACTTGGTAAAACGGTAATCA
CCTATCAATTAGTAGACTGTATCCAAGGCATCCCCGTAGTAAAGGTACTT
TTCGATTCTATGCCTGGACGCAAGGATCATCAAATCCCTCATAAGATTGA
TCAGTTGGCTTAACCCTGCAAGTGCTTTTCCTGGGTCCCTGGATCCCTTG
AAAGATTGGATGTCACTCAACgaagaaattttctttgtaagtAGAAACTT
CGTATCCCCATAAACTTCCTTGAGGCCAACCCAGATTTCGTCAATGTTGT
CTAAGTGTTTGACAAAGGACAATGCAGGCTCTGAAAAATGATTGTTAATC
AGCAAATCAGGCAAGATACGTTTAGTGGTGGTTCGA
Run BLAST on NCBI

protein sequence of TCONS_00040587-protein

>TCONS_00040587-protein ID=TCONS_00040587-protein|Name=TCONS_00040587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
RTTTKRILPDLLINNHFSEPALSFVKHLDNIDEIWVGLKEVYGDTKFLLT
KKISSLSDIQSFKGSRDPGKALAGLSQLINLMRDLMILASRHRIEKYLYY
GDALDTVY
Run BLAST on NCBI

transcript from alignment at sc0002483:3864..4999

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040587 ID=TCONS_00040587|Name=TCONS_00040587|organism=Clytia hemisphaerica|type=transcript|length=1136bp|location=Sequence derived from alignment at sc0002483:3864..4999 (Clytia hemisphaerica)
TCGAACCACCACTAAACGTATCTTGCCTGATTTGCTGATTAACAATCATT
TTTCAGAGCCTGCATTGTCCTTTGTCAAACACTTAGACAACATTGACGAA
ATCTGGGTTGGCCTCAAGGAAGTTTATGGGGATACGAAGTTTCTacttac
aaagaaaatttcttcGTTGAGTGACATCCAATCTTTCAAGGGATCCAGGG
ACCCAGGAAAAGCACTTGCAGGGTTAAGCCAACTGATCAATCTTATGAGG
GATTTGATGATCCTTGCGTCCAGGCATAGAATCGAAAAGTACCTTTACTA
CGGGGATGCCTTGGATACAGTCTACTAATTGATAGGTGATTACCGTTTTA
CCAAGTGGCTTGAACAGTCGATTGGGATCAACCAGAGTGGGAAAGTGTTG
TGGGAAAACCTCATTGACTTCTTAGAGAAGGAGTTAAAGATCCAACAACA
AAAGCTTAGACTCTCAGGAAGGGAGGATCCACCATCTGCACCCCCAAAAC
GAAAAGGCCCAGGCTTATCAGGCTATCATTCAGACAATTTGATAATGAAA
TCTGCATTCTATGTGGGAGTGCTGCTGGGGAAGATGACCATGTTGCTACC
ACAGGGCCGGGAGGAGTCAAAGTCATTCAATACTTTTCGTGCCGAAAGTT
TGTCGAGAAGACACCTGCCCAAAGACTTCAAATGTTGCGCAAAAAGGGTC
TTTGCTTTCAATGTCTTTCGCCAGGGGCTAAGTGGAATGTTGGTAGACAT
GAGGAAGGGAAATGCCAGCAAGATTTTGTTTGCCTCCATGGATCACATTT
CTAGTACCCCAAAAAGAAAGACATCCTTATATGTGAAGAGCATAagcatt
ttgatgaaaatcagGATCTATTGGACAAGTACAAGTCCAGATTCATTACC
AGAAATTCAAGCTTACCTTCATTTTCCAGAGACATCAAATTATCCTTCTA
CTCAGAAATCTCAAGTGGAGAAATCGAAGTCAACAATGTTCAAACAGATT
TTAAGGATCAAGGTGGAGACATCCCAGACCGAGGAATCTACATGTTCCAG
TCAATCAAAGTCAATGGTGAAGTATTCAATATATTCTTTGATTCTGGGTG
TAGTGACTTTATCGTCAGAAAAAGTGCAGTTGAGCG

Coding sequence (CDS) from alignment at sc0002483:3864..4999

>TCONS_00040587 ID=TCONS_00040587|Name=TCONS_00040587|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0002483:3864..4999 (Clytia hemisphaerica)
CGAACCACCACTAAACGTATCTTGCCTGATTTGCTGATTAACAATCATTT
TTCAGAGCCTGCATTGTCCTTTGTCAAACACTTAGACAACATTGACGAAA
TCTGGGTTGGCCTCAAGGAAGTTTATGGGGATACGAAGTTTCTacttaca
aagaaaatttcttcGTTGAGTGACATCCAATCTTTCAAGGGATCCAGGGA
CCCAGGAAAAGCACTTGCAGGGTTAAGCCAACTGATCAATCTTATGAGGG
ATTTGATGATCCTTGCGTCCAGGCATAGAATCGAAAAGTACCTTTACTAC
GGGGATGCCTTGGATACAGTCTACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024705XLOC_024705Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040587-proteinTCONS_00040587-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040587-exon-sc0002483-1491911889:3864..4999TCONS_00040587-exon-sc0002483-1491911889:3864..4999Clytia hemisphaericaexon
TCONS_00040587-exon-sc0002483-1510915933:3864..4999TCONS_00040587-exon-sc0002483-1510915933:3864..4999Clytia hemisphaericaexon
TCONS_00040587-exon-sc0002483-1575043694:3864..4999TCONS_00040587-exon-sc0002483-1575043694:3864..4999Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002483supercontigsc0002483:3864..4999 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.01248	1.31334	0.999742	0.827185	3.87405	3.53521	0.895288	1.81264	0.212932	0.766075	0.334482	0.729041	2.88751	2.07683	0.0279794	0	0.102059	0.270774	0.095786	0.255434	0.0740062	0.200863	0.358622	0.299777	1.39405	1.16944	0.794082	0	0.146669	0.173115
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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