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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040580 ID=TCONS_00040580|Name=TCONS_00040580|organism=Clytia hemisphaerica|type=transcript|length=2071bp
NNAAAAGCTCTCGTGATTTTAAATCAATATCTAATAAATTACAATATAGT
TTTACTCAGGATTTGTACGAGTTGAATATTGAGGCTAAAGTTCTTTTGGA
GGCCAACAATAAAGATAAACTTGCATCAGTATTAGACAAGATGGAGAAGG
AATTGTTGAAGCGCTAGAAAATCATTTGTTTGGCTGATCGCTCGGTAGCT
GGTTGGGATTCTGTCCAAGAATATTTGCCTAATGATTTGTTCGAGGATGG
ACATGATGATAGGTGGAGGAAAGCTGAGGGTAGAGCCATCTCGAGTTTGA
AACGAAAGCACCAACAGGACCCTTCCAACAATGTGGTCCCAAACAAGAAA
TTCATGTCCCCCCCAGTATAACCATGCAGTACAGAATTATCAGTCTAGAC
CACAGCTTCCAATACAACACGTGGTTCCACAACAGCAGCAAGCGTTTATA
CCTCTACACCAACGGCCCTTTCTATGGCAAGGTGCCAGTGGAGAAGGCAC
AGCAACCAACCATCTCCAACCGTTTTTGCAACCACGAAGGTATCCAGTAC
CACTCAACGCTTGTTTCGTGTGTGGAGAGACCGGCCATTGGAAACACCAG
TGTCCTAAAAGATAAACAATGGGATAATGGTAAGAGTGATAATTGTATTT
CTCTAAATAAACAAAGGGTAAAAGGAAGTTTAAAAAGGCACCTTCAATTC
TGGAGAAAAAATTTAGAAGCCAATTTACACATTTTGAAGGTTATCGAGCA
CGGTTACAGAATTCCCTTTAGGTATAATCCACCACCTTTTGAGCTTAAGA
ATAACAAATCAGCTTTACGAAACAAAAAGTTTGTTGAAGAGACCCTAGAA
GGCTTGTTAAGAGAGAGAAAGATTTTCGAAGTCCAGAGGCCGTTTGCCAC
CAACCCTTTATCAGTAGCGGAGGATCCAAGTGGGAAGAAAAGATTGATAT
TAGATGTAAGTTtcttaaatcaatttttgtggAAAGAAAAGATAAAGTTC
GACGATTGGAAAGTATTCGAAGGTTTTATCCATTCAGATGAAGAGGCGTA
TTTATTCAAGTTTGATTTAAAAAGTGGGTATCATCATGTTGACATACACA
GCGACCACCAAAAGTATTTAGGTTTTTCTTGGAATTTTGGGAAAGGTCCA
AAGAGATATTTTTTGTATTCTGTTTTGCCTTTTGGTTTGAGTTCGGGGCC
TCTAATTTTTACTAAGATAGTAAgggttctaataaaattttGGAGATCTC
ACGGGATAAGGATAGCCTGTTTTTTAGACGATNCTGAGCTCGGGGCCTCT
AATTTTTACTAAGATAGTAAgggttctaataaaattttGGAGATCTCACG
GGATAAGGATAGCCTGTTTTTTAGACGATGGTTTGTCAGTAGAATATTCG
AGGgaaaaagctaaagaaaattcactttttgttaAAGATTCCTTAGATCA
ATCAGGTTTTGTAATCAATGAGGAGAAGTCCCGATGGGATCCAGTCACAA
AAATTCAATGGTTGGGCATTCAAGTAGATTTCGAAAACAAAACTTACTCT
ATTTCGGAGAAGCGCATTACTTCGTTATTGAAGtcacttgaaaatatttt
tgatcatcCAACACGCACTTCTGCAAGGCAGCTCTCTTGTGTGGCAGGTA
AAATTGTCTCTATGATATTTGTTTTAGGAAATGTAATTCGATTAAAAACT
CGTCTAATTTACAAACTAATTGAATCCAGGGTCTCCTGGGATAAGAAAAT
GAATGTGACCTTTTTTCATGACGTTTTGAGAGAATTATTGTTTTGGAAGT
TTAATCTACGTGAGTTGGATAACAAATCAATAACAAAATAAGAAATTcca
gatttaaaattttttcagatgCAAGTGCCACGGGAATTGGTGCAAttctt
gataaaaatgtatgttatacagggtgtccctaataaaagtatcgagtttg
aacatgcgattgagtaaaaaagtttgtgtgtgttatcgctaaaatataag
aacgttctccatcacataggctcattacaaaaggtagttacaacgtataa
attaatcaatagcccttttaC Run BLAST on NCBI protein sequence of TCONS_00040580-protein >TCONS_00040580-protein ID=TCONS_00040580-protein|Name=TCONS_00040580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MQYRIISLDHSFQYNTWFHNSSKRLYLYTNGPFYGKVPVEKAQQPTISNR
FCNHEGIQYHSTLVSCVERPAIGNTSVLKDKQWDNGKSDNCISLNKQRVK
GSLKRHLQFWRKNLEANLHILKVIEHGYRIPFRYNPPPFELKNNKSALRN
KKFVEETLEGLLRERKIFEVQRPFATNPLSVAEDPSGKKRLILDVSFLNQ
FLWKEKIKFDDWKVFEGFIHSDEEAYLFKFDLKSGYHHVDIHSDHQKYLG
FSWNFGKGPKRYFLYSVLPFGLSSGPLIFTKIVRVLIKFWRSHGIRIACF
LDDXELGASNFY Run BLAST on NCBI transcript from alignment at sc0002480:9051..11175+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040580 ID=TCONS_00040580|Name=TCONS_00040580|organism=Clytia hemisphaerica|type=transcript|length=2125bp|location=Sequence derived from alignment at sc0002480:9051..11175+ (Clytia hemisphaerica)
NNAAAAGCTCTCGTGATTTTAAATCAATATCTAATAAATTACAATATAGT
TTTACTCAGGATTTGTACGAGTTGAATATTGAGGCTAAAGTTCTTTTGGA
GGCCAACAATAAAGATAAACTTGCATCAGTATTAGACAAGATGGAGAAGG
AATTGTTGAAGCGCTAGAAAATCATTTGTTTGGCTGATCGCTCGGTAGCT
GGTTGGGATTCTGTCCAAGAATATTTGCCTAATGATTTGTTCGAGGATGG
ACATGATGATAGGTGGAGGAAAGCTGAGGGTAGAGCCATCTCGAGTTTGA
AACGAAAGCACCAACAGGACCCTTCCAACAATGTGGTCCCAAACAAGAAA
TTCATGTCCCCCCCAGTATAACCATGCAGTACAGAATTATCAGTCTAGAC
CACAGCTTCCAATACAACACGTGGTTCCACAACAGCAGCAAGCGTTTATA
CCTCTACACCAACGGCCCTTTCTATGGCAAGGTGCCAGTGGAGAAGGCAC
AGCAACCAACCATCTCCAACCGTTTTTGCAACCACGAAGGTATCCAGTAC
CACTCAACGCTTGTTTCGTGTGTGGAGAGACCGGCCATTGGAAACACCAG
TGTCCTAAAAGATAAACAATGGGATAATGGTAAGAGTGATAATTGTATTT
CTCTAAATAAACAAAGGGTAAAAGGAAGTTTAAAAAGGCACCTTCAATTC
TGGAGAAAAAATTTAGAAGCCAATTTACACATTTTGAAGGTTATCGAGCA
CGGTTACAGAATTCCCTTTAGGTATAATCCACCACCTTTTGAGCTTAAGA
ATAACAAATCAGCTTTACGAAACAAAAAGTTTGTTGAAGAGACCCTAGAA
GGCTTGTTAAGAGAGAGAAAGATTTTCGAAGTCCAGAGGCCGTTTGCCAC
CAACCCTTTATCAGTAGCGGAGGATCCAAGTGGGAAGAAAAGATTGATAT
TAGATGTAAGTTtcttaaatcaatttttgtggAAAGAAAAGATAAAGTTC
GACGATTGGAAAGTATTCGAAGGTTTTATCCATTCAGATGAAGAGGCGTA
TTTATTCAAGTTTGATTTAAAAAGTGGGTATCATCATGTTGACATACACA
GCGACCACCAAAAGTATTTAGGTTTTTCTTGGAATTTTGGGAAAGGTCCA
AAGAGATATTTTTTGTATTCTGTTTTGCCTTTTGGTTTGAGTTCGGGGCC
TCTAATTTTTACTAAGATAGTAAgggttctaataaaattttGGAGATCTC
ACGGGATAAGGATAGCCTGTTTTTTAGACGATNCTGAGCTCGGGGCCTCT
AATTTTTACTAAGATAGTAAgggttctaataaaattttGGAGATCTCACG
GGATAAGGATAGCCTGTTTTTTAGACGATGGTTTGTCAGTAGAATATTCG
AGGgaaaaagctaaagaaaattcactttttgttaAAGATTCCTTAGATCA
ATCAGGTTTTGTAATCAATGANAATTCACTTTTCGTTAAAGATTCCTTAG
ATCAATCAGGTTTTGTAATCAATGAGGAGAAGTCCCGATGGGATCCAGTC
ACAAAAATTCAATGGTTGGGCATTCAAGTAGATTTCGAAAACAAAACTTA
CTCTATTTCGGAGAAGCGCATTACTTCGTTATTGAAGtcacttgaaaata
tttttgatcatcCAACACGCACTTCTGCAAGGCAGCTCTCTTGTGTGGCA
GGTAAAATTGTCTCTATGATATTTGTTTTAGGAAATGTAATTCGATTAAA
AACTCGTCTAATTTACAAACTAATTGAATCCAGGGTCTCCTGGGATAAGA
AAATGAATGTGACCTTTTTTCATGACGTTTTGAGAGAATTATTGTTTTGG
AAGTTTAATCTACGTGAGTTGGATAACAAATCAATAACAAAATAAGAAAT
TccagatttaaaattttttcagatgCAAGTGCCACGGGAATTGGTGCAAt
tcttgataaaaatgtatgttatacagggtgtccctaataaaagtatcgag
tttgaacatgcgattgagtaaaaaagtttgtgtgtgttatcgctaaaata
taagaacgttctccatcacataggctcattacaaaaggtagttacaacgt
ataaattaatcaatagcccttttaC Coding sequence (CDS) from alignment at sc0002480:9051..11175+ >TCONS_00040580 ID=TCONS_00040580|Name=TCONS_00040580|organism=Clytia hemisphaerica|type=CDS|length=939bp|location=Sequence derived from alignment at sc0002480:9051..11175+ (Clytia hemisphaerica)
ATGCAGTACAGAATTATCAGTCTAGACCACAGCTTCCAATACAACACGTG
GTTCCACAACAGCAGCAAGCGTTTATACCTCTACACCAACGGCCCTTTCT
ATGGCAAGGTGCCAGTGGAGAAGGCACAGCAACCAACCATCTCCAACCGT
TTTTGCAACCACGAAGGTATCCAGTACCACTCAACGCTTGTTTCGTGTGT
GGAGAGACCGGCCATTGGAAACACCAGTGTCCTAAAAGATAAACAATGGG
ATAATGGTAAGAGTGATAATTGTATTTCTCTAAATAAACAAAGGGTAAAA
GGAAGTTTAAAAAGGCACCTTCAATTCTGGAGAAAAAATTTAGAAGCCAA
TTTACACATTTTGAAGGTTATCGAGCACGGTTACAGAATTCCCTTTAGGT
ATAATCCACCACCTTTTGAGCTTAAGAATAACAAATCAGCTTTACGAAAC
AAAAAGTTTGTTGAAGAGACCCTAGAAGGCTTGTTAAGAGAGAGAAAGAT
TTTCGAAGTCCAGAGGCCGTTTGCCACCAACCCTTTATCAGTAGCGGAGG
ATCCAAGTGGGAAGAAAAGATTGATATTAGATGTAAGTTtcttaaatcaa
tttttgtggAAAGAAAAGATAAAGTTCGACGATTGGAAAGTATTCGAAGG
TTTTATCCATTCAGATGAAGAGGCGTATTTATTCAAGTTTGATTTAAAAA
GTGGGTATCATCATGTTGACATACACAGCGACCACCAAAAGTATTTAGGT
TTTTCTTGGAATTTTGGGAAAGGTCCAAAGAGATATTTTTTGTATTCTGT
TTTGCCTTTTGGTTTGAGTTCGGGGCCTCTAATTTTTACTAAGATAGTAA
gggttctaataaaattttGGAGATCTCACGGGATAAGGATAGCCTGTTTT
TTAGACGATNCTGAGCTCGGGGCCTCTAATTTTTACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040580-exon-sc0002480-1491911889:9051..10505 | TCONS_00040580-exon-sc0002480-1491911889:9051..10505 | Clytia hemisphaerica | exon |
| TCONS_00040580-exon-sc0002480-1510915933:9051..10505 | TCONS_00040580-exon-sc0002480-1510915933:9051..10505 | Clytia hemisphaerica | exon |
| TCONS_00040580-exon-sc0002480-1575043694:9051..10505 | TCONS_00040580-exon-sc0002480-1575043694:9051..10505 | Clytia hemisphaerica | exon |
| TCONS_00040580-exon-sc0002480-1491911889:10560..11175 | TCONS_00040580-exon-sc0002480-1491911889:10560..11175 | Clytia hemisphaerica | exon |
| TCONS_00040580-exon-sc0002480-1510915933:10560..11175 | TCONS_00040580-exon-sc0002480-1510915933:10560..11175 | Clytia hemisphaerica | exon |
| TCONS_00040580-exon-sc0002480-1575043694:10560..11175 | TCONS_00040580-exon-sc0002480-1575043694:10560..11175 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002480 | supercontig | sc0002480:9051..11175 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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