TCONS_00040578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040578
Unique NameTCONS_00040578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3064

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040578 ID=TCONS_00040578|Name=TCONS_00040578|organism=Clytia hemisphaerica|type=transcript|length=3064bp
cgaaaaatgtctAATATTGTTCAAGGAAAAGTTTCGGCTTTAAAGCCTGA
ACCTATTGATGATTCCAGATGTACaaaaaagaaatctttattTCAACAAA
TTACTGATACTAGGAATAGTCAAGGTGTTTTTGATCGACAGGAAAATCAG
TTTAAAAAATACAACCTTGGTAATGGTTTAACAATGAACGATCCCATTGC
CACAGCTGACTATCTTTTGGAAAGGGAATATGTCAAATCATTTTTGTTCG
ATTCACAGAATTACCACGAAGCTTTATTCATACCACCTGTGtttaaatca
aatcaatataCCAAAGAACCGTCAGTTTCCATTCTGGATTATGATGTTGT
GAAAGATATTGAAAAAACGTTGGGAAATATGTTGAAGAATTCCCCTAGTC
ATTGGTTTACAACTGACTTTCAAGCTTTCATACATACGCAGAAATCTGTC
AATCGTACCACTACTTTGACCGAGATTAACAGTAAAGAATTTGACCAGTG
GATCACAAAAAGCAAAATTAAGCATCTTGTAGTCAAGGAGCTTCAGACCG
ACCAGAACCTCCCACAAATGACCACCGATATTGATATCTTCATTCAAAAC
TGTTTAGTCGCATTGCAACAGCAGTCAAAGAATGGATCGAACATCGagac
attttttcaacaatgcAGTGTCAAACTACCGCGAAAAGGAGGTAGAAATA
AAGTTAAAGCAGACGTCAACAAATTAGTGAGTGAGTCCAACGTTTGTGAG
GATTCAAATATCAAATGGCTTTGGAATTTACAATTGAGTGACCTAGGAGA
GGAAGTTGAGCATTGGTTTTATGACCAACTTCAATCGATTAAAGATGGAA
CTTTGAAAGACCTTGTCCTTCTACAATCTTCACAATTCATGACAAGCgtt
gaaaacaagaaacatcGGGAATACGACCTTCTCATCTTGTCCCATTCAAG
AAAATTGGTGATCGGCATTGAACTTAAAAGAACATCAACTGACCAGGCGC
TTTTAAAAGCATGTACACAGCTTGACAAATATCAAACATCGTTGGAAGAG
ACATTGGGGGACCAGTTTGGTTCAGGATGGCAGTTTTTCCCGGTTATCTG
TGTCCAACAAGATTCACGTACCTTCAAAAGCGCACACTACATCAATGCTA
TGACTGATATTCGAGATTGGTTATCAAATGTATTGAAGAGATTCCCTATG
ATCATCAACCAAACTGACTTAATCGACTCTTTGGCAAGCCTCAAAAAAGT
ATTACGCATTATTGTGTTCGCAGTACATGTTTCTGTACCCGTTACTCACA
CCAACTGGGTAGATTACATTAGCCAGGCAATCGTCAATGTATCCACTCAC
GATAACTTGATTTTCTACTCCAACCAGCAATTGGCTGCATTCAAATCAGA
TGATCCAAAGTTTAAGAAAATCCTTTTGCAAGGAAATTACGGGACAGGCA
AAAGCATTTTGCTTAGAGAGAAGGCTAAACAAATATGTCAGCGAGATGCA
TCTCTAAAAAACAGAGTTGTGTACATAACATCTAAAACAACGAGTAGAAA
AATGCTCCAAACATACTACCTTGAGACGGTTTTGGGGCCGTTTGGTGTTG
TTGTTGAAGAATTTGGTCCAGAATCAACAGAGTCACTTGAATCAATCATT
AGAAGAACCAATGCGAAAGCTATCTTTTTGGACGAATGGAGTGTAAATAG
TGAAACACTCGAAAGAATATTAACGTTATGCGATTTGGTTTGGATTGCAC
AGGAGGCTGAAGAATACAATCACAATAAATCATTAATATTGCCGACTGGA
TTTACATATGTTGAGCTCGGATTGAATCTTCGAAATAGTAGAGAAATTGT
TTCTGCAGTAGATGATGATGATTACGATTTTAAAACGTTACGTTATGCAT
CGTTTCCTCCGATCAACTTCCCTTGTGGACGTCCAGTGATTAGAGTGGAT
TCGCTAAACGAAGCCATAATTCAAGCACGATGTTTGACGTCTGATGGGAT
TGTCGTTTTGATGTATAATCCTCATTACAATgccaatattaaaaaaaaag
ttatatcaGTGATGAGAAGTTATACAAACGAAAAATGGAAGCTCTACGAA
GATATCACTGACAATGAAAACGGATATAAACTTCTTAATGAAGGTTACAT
TTTATTCGCTGATTCATACTCTGATGTGGTTGGATTCGAGTGGCCTACGG
TCATCTGCATAGCGAAAGAGTCGCGCCCACCTGTAATTCCAAGATATGGT
TTTATGAGATGCACTACCAACTTGATAGTGTACTATGTGTGAGGGAAGCT
AAATAACAGACCCGGggaggggggggtacttagCAAATGGAAGGTACGGT
GTGTgctgcccttaagggtaccttttttggatttccaaagtcccgctaaa
ggtcggaaaaatcagaaaatcaaatttcagtctcactaagggtaggagaa
ataggaaaatccCAACTTTTTACCTCAAGAAAGATCGAagtttggtcaaa
attggtcaagtttgtcccggtaagggtcgtaaaattcacaaaattttctt
ttgttttctcctttttagtcccggtaagggtccgaggatcgaaagtcggg
cggcaacccccgtcagctcgcaaccctagtacccccgggtaACAGACTCG
ATTTGATATTGTATTTTGTATCTTGTAGGTTATATTGATGTTATTTGTCT
ATGCTTTATATCTTGTACATCGTGTATTATTTATGTCTTGTATAATGTTA
TATGTTACATGCATATTATAATTATTTGTATTACATATCATATAAGATAG
TTTGCCATCTTCCCTGACAGTAGAGATCATTTTTTCGAGTTCCTTGCTGG
GAGAATGGGCCGAGTGAGTTCTCCTCCTTTGCCATGTGGTTTTGAGAGGC
CATTCTATCCAGCAAGGGCAGTTGAGCCATGACCATCAACCAGTAAGCAG
CATGTGATAAGAGATAAAGTCTTCATATGCCTTCATACTTTTCTCGCCTC
TGATTGACTAGATATCTCCCAGTAACTAAAGGGATTTTTTATAATATTAT
AAGGCATAGTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00040578-protein

>TCONS_00040578-protein ID=TCONS_00040578-protein|Name=TCONS_00040578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=763bp
RKMSNIVQGKVSALKPEPIDDSRCTKKKSLFQQITDTRNSQGVFDRQENQ
FKKYNLGNGLTMNDPIATADYLLEREYVKSFLFDSQNYHEALFIPPVFKS
NQYTKEPSVSILDYDVVKDIEKTLGNMLKNSPSHWFTTDFQAFIHTQKSV
NRTTTLTEINSKEFDQWITKSKIKHLVVKELQTDQNLPQMTTDIDIFIQN
CLVALQQQSKNGSNIETFFQQCSVKLPRKGGRNKVKADVNKLVSESNVCE
DSNIKWLWNLQLSDLGEEVEHWFYDQLQSIKDGTLKDLVLLQSSQFMTSV
ENKKHREYDLLILSHSRKLVIGIELKRTSTDQALLKACTQLDKYQTSLEE
TLGDQFGSGWQFFPVICVQQDSRTFKSAHYINAMTDIRDWLSNVLKRFPM
IINQTDLIDSLASLKKVLRIIVFAVHVSVPVTHTNWVDYISQAIVNVSTH
DNLIFYSNQQLAAFKSDDPKFKKILLQGNYGTGKSILLREKAKQICQRDA
SLKNRVVYITSKTTSRKMLQTYYLETVLGPFGVVVEEFGPESTESLESII
RRTNAKAIFLDEWSVNSETLERILTLCDLVWIAQEAEEYNHNKSLILPTG
FTYVELGLNLRNSREIVSAVDDDDYDFKTLRYASFPPINFPCGRPVIRVD
SLNEAIIQARCLTSDGIVVLMYNPHYNANIKKKVISVMRSYTNEKWKLYE
DITDNENGYKLLNEGYILFADSYSDVVGFEWPTVICIAKESRPPVIPRYG
FMRCTTNLIVYYV
Run BLAST on NCBI

transcript from alignment at sc0002479:12489..16428+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040578 ID=TCONS_00040578|Name=TCONS_00040578|organism=Clytia hemisphaerica|type=transcript|length=3940bp|location=Sequence derived from alignment at sc0002479:12489..16428+ (Clytia hemisphaerica)
cgaaaaatgtctAATATTGTTCAAGGAAAAGTTTCGGCTTTAAAGCCTGA ACCTATTGATGATTCCAGATGTACaaaaaagaaatctttattTCAACAAA TTACTGATACTAGGAATAGTCAAGGTGTTTTTGATCGACAGGAAAATCAG TTTAAAAAATACAACCTTGGTAATGGTTTAACAATGAACGATCCCATTGC CACAGCTGACTATCTTTTGGAAAGGGAATATGTCAAATCATTTTTGTTCG ATTCACAGAATTACCACGAAGCTTTATTCATACCACCTGTGtttaaatca aatcaatataCCAAAGAACCGTCAGTTTCCATTCTGGATTATGATGTTGT GAAAGATATTGAAAAAACGTTGGGAAATATGTTGAAGAATTCCCCTAGTC ATTGGTTTACAACTGACTTTCAAGCTTTCATACATACGCAGAAATCTGTC AATCGTACCACTACTTTGACCGAGATTAACAGTAAAGAATTTGACCAGTG GATCACAAAAAGCAAAATTAAGCATCTTGTAGTCAAGGAGCTTCAGACCG ACCAGAACCTCCCACAAATGACCACCGATATTGATATCTTCATTCAAAAC TGTTTAGTCGCATTGCAACAGCAGTCAAAGAATGGATCGAACATCGagac attttttcaacaatgcAGTGTCAAACTACCGCGAAAAGGAGGTAGAAATA AAGTTAAAGCAGACGTCAACAAATTAGTGAGTGAGTCCAACGTTTGTGAG GATTCAAATATCAAATGGCTTTGGAATTTACAATTGAGTGACCTAGGAGA GGAAGTTGAGCATTGGTTTTATGACCAACTTCAATCGATTAAAGATGGAA CTTTGAAAGACCTTGTCCTTCTACAATCTTCACAATTCATGACAAGCgtt gaaaacaagaaacatcGGGAATACGACCTTCTCATCTTGTCCCATTCAAG AAAATTGGTGATCGGCATTGAACTTAAAAGAACATCAACTGACCAGGCGC TTTTAAAAGCATGTACACAGCTTGACAAATATCAAACATCGTTGGAAGAG ACATTGGGGGACCAGTTTGGTTCAGGATGGCAGTTTTTCCCGGTTATCTG TGTCCAACAAGATTCACGTACCTTCAAAAGCGCACACTACATCAATGCTA TGACTGATATTCGAGATTGGTTATCAAATGTATTGAAGAGATTCCCTATG ATCATCAACCAAACTGACTTAATCGACTCTTTGGCAAGCCTCAAAAAAGT ATTACGCATTATTGTGTTCGCAGTACATGTTTCTGTACCCGTTACTCACA CCAACTGGGTAGATTACATTAGCCAGGCAATCGTCAATGTATCCACTCAC GATAACTTGATTTTCTACTCCAACCAGCAATTGGCTGCATTCAAATCAGA TGATCCAAAGTTTAAGAAAATCCTTTTGCAAGGAAATTACGGGACAGGCA AAAGCATTTTGCTTAGAGAGAAGGCTAAACAAATATGTCAGCGAGATGCA TCTCTAAAAAACAGAGTTGTGTACATAACATCTAAAACAACGAGTAGAAA AATGCTCCAAACATACTACCTTGAGACGGTTTTGGGGCCGTTTGGTGTTG TTGTTGAAGAATTTGGTCCAGAATCAACAGTAagatttatttctttaaaa aaattgaaattcacagTTTCTATTAACGGTCATGGTCACATGTACTAAGA TGTTTCCTGTCTAACGTAGGACTAGCACTGGCATGAAAATGAAAGCTATA GATTTAGTAGATAAAagcttattttttcaatacacctttcccgtaattcg taaaactaatgcgcgcgcattattttgatgctctccaccgtttggtctct ggatgtaaacaaacccgtttttgcctgcgttcccttagggaaagttattt tttttagcttttcttaagttctgtcgaacaaagtcccctcaaattttagt atgttcaatctattcatgatattataccatcctaaaaatattttgccaaa agaaggttgctgtcaaaagttagaggctcaaatcccactttccctaaccc ctcgcaggcaaaaacgagttttttacctcccaaacaattttatacacaac ggtggagcgcacattttcccgggccatttctgagaaatttgaattacggg aaaggtgtattagtcATTAAATTTGATTCGACTATCAAATATGTTATAAT CATACTTAAGTTGAATATATTAAGAAGtcattaatttattttattcttcT CTAGGAGTCACTTGAATCAATCATTAGAAGAACCAATGCGAAAGCTATCT TTTTGGACGAATGGAGTGTAAATAGTGAAACACTCGAAAGAATATTAACG TTATGCGATTTGGTTTGGATTGCACAGGAGGCTGAAGAATACAATCACAA TAAATCATTAATNgtcaataaatttgattcgACTATCAAATATGTTATAA TCATACTTAAGTTGAATATATTAAGAAGtcattaatttattttattcttc TCTAGGAGTCACTTGAATCAATCATTAGAAGAACCAATGCGAAAGCTATC TTTTTGGACGAATGGAGTGTAAATAGTGAAACACTCGAAAGAATATTAAC GTTATGCGATTTGGTTTGGATTGCACAGGAGGCTGAAGAATACAATCACA ATAAATCATTAATATTGCCGACTGGATTTACATATGTTGAGCTCGGATTG AATCTTCGAAATAGTAGAGAAATTGTTTCTGCAGTAGATGATGATGATTA CGATTTTAAAACGTTACGTTATGCATCGTTTCCTCCGATCAACTTCCCTT GTGGACGTCCAGTGATTAGAGTGGATTCGCTAAACGAAGCCATAATTCAA GCACGATGTTTGACGTCTGATGGGATTGTCGTTTTGATGTATAATCCTCA TTACAATgccaatattaaaaaaaaagttatatcaGTGATGAGAAGTTATA CAAACGAAAAATGGAAGCTCTACGAAGATATCACTGACAATGAAAACGGA TATAAACTTCTTAATGAAGGTTACATTTTATTCGCTGATTCATACTCTGA TGTGGTTGGATTCGAGTGGCCTACGGTCATCTGCATAGCGAAAGAGTCGC GCCCACCTGTAATTCCAAGATATGGTTTTATGAGATGCACTACCAACTTG ATAGTGTACTATGTGTGAGGGAAGCTAAATAACAGACCCGGggagggggg ggtacttagCAAATGGAAGGTACGGTGTGTgctgcccttaagggtacctt ttttggatttccaaagtcccgctaaaggtcggaaaaatcagaaaatcaaa tttcagtctcactaagggtaggagaaataggaaaatccCAACTTTTTACC TCAAGAAAGATCGAagtttggtcaaaattggtcaagtttgtcccggtaag ggtcgtaaaattcacaaaattttcttttgttttctcctttttagtcccgg taagggtccgaggatcgaaagtcgggcggcaacccccgtcagctcgcaac cctagtacccccgggtaACAGACTCGATTTGATATTGTATTTTGTATCTT GTAGGTTATATTGATGTTATTTGTCTATGCTTTATATCTTGTACATCGTG TATTATTTATGTCTTGTATAATGTTATATGTTACATGCATATTATAATTA TTTGTATTACATATCATATAAGATAGTTTGCCATCTTCCCTGACAGTAGA GATCATTTTTTCGAGTTCCTTGCTGGGAGAATGGGCCGAGTGAGTTCTCC TCCTTTGCCATGTGGTTTTGAGAGGCCATTCTATCCAGCAAGGGCAGTTG AGCCATGACCATCAACCAGTAAGCAGCATGTGATAAGAGATAAAGTCTTC ATATGCCTTCATACTTTTCTCGCCTCTGATTGACTAGATATCTCCCAGTA ACTAAAGGGATTTTTTATAATATTATAAGGCATAGTTTTG

Coding sequence (CDS) from alignment at sc0002479:12489..16428+

>TCONS_00040578 ID=TCONS_00040578|Name=TCONS_00040578|organism=Clytia hemisphaerica|type=CDS|length=4584bp|location=Sequence derived from alignment at sc0002479:12489..16428+ (Clytia hemisphaerica)
cgaaaaatgtctAATATTGTTCAAGGAAAAGTTTCGGCTTTAAAGCCTGA
ACCTATTGATGATTCCAGATGTACaaaaaagaaatctttattTCAACAAA
TTACTGATACTAGGAATAGTCAAGGTGTTTTTGATCGACAGGAAAATCAG
TTTAAAAAATACAACCTTGGTAATGGTTTAACAATGAACGATCCCATTGC
CACAGCTGACTATCTTTTGGAAAGGGAATATGTCAAATCATTTTTGTTCG
ATTCACAGAATTACCACGAAGCTTTATTCATACCACCTGTGtttaaatca
aatcaatataCCAAAGAACCGTCAGTTTCCATTCTGGATTATGATGTTGT
GAAAGATATTGAAAAAACGTTGGGAAATATGTTGAAGAATTCCCCTAGTC
ATTGGTTTACAACTGACTTTCAAGCTTTCATACATACGCAGAAATCTGTC
AATCGTACCACTACTTTGACCGAGATTAACAGTAAAGAATTTGACCAGTG
GATCACAAAAAGCAAAATTAAGCATCTTGTAGTCAAGGAGCTTCAGACCG
ACCAGAACCTCCCACAAATGACCACCGATATTGATATCTTCATTCAAAAC
TGTTTAGTCGCATTGCAACAGCAGTCAAAGAATGGATCGAACATCGagac
attttttcaacaatgcAGTGTCAAACTACCGCGAAAAGGAGGTAGAAATA
AAGTTAAAGCAGACGTCAACAAATTAGTGAGTGAGTCCAACGTTTGTGAG
GATTCAAATATCAAATGGCTTTGGAATTTACAATTGAGTGACCTAGGAGA
GGAAGTTGAGCATTGGTTTTATGACCAACTTCAATCGATTAAAGATGGAA
CTTTGAAAGACCTTGTCCTTCTACAATCTTCACAATTCATGACAAGCgtt
gaaaacaagaaacatcGGGAATACGACCTTCTCATCTTGTCCCATTCAAG
AAAATTGGTGATCGGCATTGAACTTAAAAGAACATCAACTGACCAGGCGC
TTTTAAAAGCATGTACACAGCTTGACAAATATCAAACATCGTTGGAAGAG
ACATTGGGGGACCAGTTTGGTTCAGGATGGCAGTTTTTCCCGGTTATCTG
TGTCCAACAAGATTCACGTACCTTCAAAAGCGCACACTACATCAATGCTA
TGACTGATATTCGAGATTGGTTATCAAATGTATTGAAGAGATTCCCTATG
ATCATCAACCAAACTGACTTAATCGACTCTTTGGCAAGCCTCAAAAAAGT
ATTACGCATTATTGTGTTCGCAGTACATGTTTCTGTACCCGTTACTCACA
CCAACTGGGTAGATTACATTAGCCAGGCAATCGTCAATGTATCCACTCAC
GATAACTTGATTTTCTACTCCAACCAGCAATTGGCTGCATTCAAATCAGA
TGATCCAAAGTTTAAGAAAATCCTTTTGCAAGGAAATTACGGGACAGGCA
AAAGCATTTTGCTTAGAGAGAAGGCTAAACAAATATGTCAGCGAGATGCA
TCTCTAAAAAACAGAGTTGTGTACATAACATCTAAAACAACGAGTAGAAA
AATGCTCCAAACATACTACCTTGAGACGGTTTTGGGGCCGTTTGGTGTTG
TTGTTGAAGAATTTGGTCCAGAATCAACAGAGTCACTTGAATCAATCATT
AGAAGAACCAATGCGAAAGCTATCTTTTTGGACGAATGGAGTGTAAATAG
TGAAACACTCGAAAGAATATTAACGTTATGCGATTTGGTTTGGATTGCAC
AGGAGGCTGAAGAATACAATCACAATAAATCATTAATATTGCCGACTGGA
TTTACATATGTTGAGCTCGGATTGAATCTTCGAAATAGTAGAGAAATTGT
TTCTGCAGTAGATGATGATGATTACGATTTTAAAACGTTACGTTATGCAT
CGTTTCCTCCGATCAACTTCCCTTGTGGACGTCCAGTGATTAGAGTGGAT
TCGCTAAACGAAGCCATAATTCAAGCACGATGTTTGACGTCTGATGGGAT
TGTCGTTTTGATGTATAATCCTCATTACAATgccaatattaaaaaaaaag
ttatatcaGTGATGAGAAGTTATACAAACGAAAAATGGAAGCTCTACGAA
GATATCACTGACAATGAAAACGGATATAAACTTCTTAATGAAGGTTACAT
TTTATTCGCTGATTCATACTCTGATGTGGTTGGATTCGAGTGGCCTACGG
TCATCTGCATAGCGAAAGAGTCGCGCCCACCTGTAATTCCAAGATATGGT
TTTATGAGATGCACTACCAACTTGATAGTGTACTATGTGTGAcgaaaaat
gtctAATATTGTTCAAGGAAAAGTTTCGGCTTTAAAGCCTGAACCTATTG
ATGATTCCAGATGTACaaaaaagaaatctttattTCAACAAATTACTGAT
ACTAGGAATAGTCAAGGTGTTTTTGATCGACAGGAAAATCAGTTTAAAAA
ATACAACCTTGGTAATGGTTTAACAATGAACGATCCCATTGCCACAGCTG
ACTATCTTTTGGAAAGGGAATATGTCAAATCATTTTTGTTCGATTCACAG
AATTACCACGAAGCTTTATTCATACCACCTGTGtttaaatcaaatcaata
taCCAAAGAACCGTCAGTTTCCATTCTGGATTATGATGTTGTGAAAGATA
TTGAAAAAACGTTGGGAAATATGTTGAAGAATTCCCCTAGTCATTGGTTT
ACAACTGACTTTCAAGCTTTCATACATACGCAGAAATCTGTCAATCGTAC
CACTACTTTGACCGAGATTAACAGTAAAGAATTTGACCAGTGGATCACAA
AAAGCAAAATTAAGCATCTTGTAGTCAAGGAGCTTCAGACCGACCAGAAC
CTCCCACAAATGACCACCGATATTGATATCTTCATTCAAAACTGTTTAGT
CGCATTGCAACAGCAGTCAAAGAATGGATCGAACATCGagacattttttc
aacaatgcAGTGTCAAACTACCGCGAAAAGGAGGTAGAAATAAAGTTAAA
GCAGACGTCAACAAATTAGTGAGTGAGTCCAACGTTTGTGAGGATTCAAA
TATCAAATGGCTTTGGAATTTACAATTGAGTGACCTAGGAGAGGAAGTTG
AGCATTGGTTTTATGACCAACTTCAATCGATTAAAGATGGAACTTTGAAA
GACCTTGTCCTTCTACAATCTTCACAATTCATGACAAGCgttgaaaacaa
gaaacatcGGGAATACGACCTTCTCATCTTGTCCCATTCAAGAAAATTGG
TGATCGGCATTGAACTTAAAAGAACATCAACTGACCAGGCGCTTTTAAAA
GCATGTACACAGCTTGACAAATATCAAACATCGTTGGAAGAGACATTGGG
GGACCAGTTTGGTTCAGGATGGCAGTTTTTCCCGGTTATCTGTGTCCAAC
AAGATTCACGTACCTTCAAAAGCGCACACTACATCAATGCTATGACTGAT
ATTCGAGATTGGTTATCAAATGTATTGAAGAGATTCCCTATGATCATCAA
CCAAACTGACTTAATCGACTCTTTGGCAAGCCTCAAAAAAGTATTACGCA
TTATTGTGTTCGCAGTACATGTTTCTGTACCCGTTACTCACACCAACTGG
GTAGATTACATTAGCCAGGCAATCGTCAATGTATCCACTCACGATAACTT
GATTTTCTACTCCAACCAGCAATTGGCTGCATTCAAATCAGATGATCCAA
AGTTTAAGAAAATCCTTTTGCAAGGAAATTACGGGACAGGCAAAAGCATT
TTGCTTAGAGAGAAGGCTAAACAAATATGTCAGCGAGATGCATCTCTAAA
AAACAGAGTTGTGTACATAACATCTAAAACAACGAGTAGAAAAATGCTCC
AAACATACTACCTTGAGACGGTTTTGGGGCCGTTTGGTGTTGTTGTTGAA
GAATTTGGTCCAGAATCAACAGAGTCACTTGAATCAATCATTAGAAGAAC
CAATGCGAAAGCTATCTTTTTGGACGAATGGAGTGTAAATAGTGAAACAC
TCGAAAGAATATTAACGTTATGCGATTTGGTTTGGATTGCACAGGAGGCT
GAAGAATACAATCACAATAAATCATTAATATTGCCGACTGGATTTACATA
TGTTGAGCTCGGATTGAATCTTCGAAATAGTAGAGAAATTGTTTCTGCAG
TAGATGATGATGATTACGATTTTAAAACGTTACGTTATGCATCGTTTCCT
CCGATCAACTTCCCTTGTGGACGTCCAGTGATTAGAGTGGATTCGCTAAA
CGAAGCCATAATTCAAGCACGATGTTTGACGTCTGATGGGATTGTCGTTT
TGATGTATAATCCTCATTACAATgccaatattaaaaaaaaagttatatca
GTGATGAGAAGTTATACAAACGAAAAATGGAAGCTCTACGAAGATATCAC
TGACAATGAAAACGGATATAAACTTCTTAATGAAGGTTACATTTTATTCG
CTGATTCATACTCTGATGTGGTTGGATTCGAGTGGCCTACGGTCATCTGC
ATAGCGAAAGAGTCGCGCCCACCTGTAATTCCAAGATATGGTTTTATGAG
ATGCACTACCAACTTGATAGTGTACTATGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024696XLOC_024696Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040578-proteinTCONS_00040578-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040578-exon-sc0002479-1491911889:12489..14117TCONS_00040578-exon-sc0002479-1491911889:12489..14117Clytia hemisphaericaexon
TCONS_00040578-exon-sc0002479-1510915933:12489..14117TCONS_00040578-exon-sc0002479-1510915933:12489..14117Clytia hemisphaericaexon
TCONS_00040578-exon-sc0002479-1575043694:12489..14117TCONS_00040578-exon-sc0002479-1575043694:12489..14117Clytia hemisphaericaexon
TCONS_00040578-exon-sc0002479-1491911889:14994..16428TCONS_00040578-exon-sc0002479-1491911889:14994..16428Clytia hemisphaericaexon
TCONS_00040578-exon-sc0002479-1510915933:14994..16428TCONS_00040578-exon-sc0002479-1510915933:14994..16428Clytia hemisphaericaexon
TCONS_00040578-exon-sc0002479-1575043694:14994..16428TCONS_00040578-exon-sc0002479-1575043694:14994..16428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002479supercontigsc0002479:12489..16428 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.087233 0.0371644 0.0574077 0.0826591 0.281073 0.15913 0.244566 0.226852 0.158783 0.145038 0.303504 0.0758945 0.269865 0.220247 0.261364 0.344704 0.125443 0.251562 0.421729 0.536796 0.224191 0.386314 0.258905 0.171007 0.250253 0.174844 0.250021 0.215554 0.258392 0.172359
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top