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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040572 ID=TCONS_00040572|Name=TCONS_00040572|organism=Clytia hemisphaerica|type=transcript|length=3971bp
AGCGAAGTTTCCAGCGAttgaaaaaagctggaaaagcagaTTCTCGTGCA
TTTTCGCACGCTAATTACTTTTGCATGCGCATCATTACGTCATAATGGGA
GCATGCGCTGTGAAAACGTTTTAAATAAGGCGTTTGAATTACAAACATCC
TCGCTGCATTCACTCATCAAACTAAGCGTACTGTGTATGTGTGTGTGAGa
aagaaattctttttaaaaaatgtctaaaaaaccaagtgaaaaatcaaaat
ctactGATGGTGGAACTACTTCTGGAAATGAAACACTAACTGTTACTTAC
GAGCAGTTGAGAACTCTGGTTAACGATGTTGTTGAAAAAGACTTTGGCCC
ACAAATCATGAAAAGCACCAAAGACACAGTGAAAGCTGCTTCTGTGCAAT
CTGCTGAGAATCATTCGACCAATCTGGCTAAGCTCAAAAAGAAACTCGAA
AGGAAGAGAGCCAACGACAACATCGTACTCAAGAAAACCGGCCATCAAGA
TCAATTTGCTCATAATACAGCAGTCTTGGAAACGATTGAGGATACCCTCG
AATTCATGGAAGAGACGGATGTTGATGGGATGAAAGAAGCTTTAAATAAA
GACCGATTTTGGGAATTCGAACAATCTGCTGAAAGTATCTCCGTCGCCGG
aaagattcaaaaattttcagaattttgggAAAAAGACTTGAAAGCATCCA
ACTTCGCCTTGAATATCGTACACGAAGGATACAAAATACCTTTCGAGTCA
GAACCACCaaaatttttcgcaaaaaaCAACGCTTCCAGTCTAAAAAATCG
AACTTTCGTTACGGATAGTATCACACAACTTTTAAAGGACGATTGCATCA
AAAAAGTCGACGAACCGCCTCATTGTGTTAATCCTTTGACTGTTGCAGAA
GGAAACTCAAAACTAAGACTCGTTCTGGACCTTAGACACGTCAACAGATA
TATCAAGCCAAAAAAGTTCAAGTACGAAAActtaaaacaggtttcagaAC
TCACGAACAAAAACGACTTTTTAATTACTTTCGATCTTAAGAGTGGGTAT
CATCACGTTCCAATCAATccagattttcaaacttttttgggATTCGCCTG
GGACATCGACGGCAAAAGACAGTATTTCGTATTCAAAGTCTTACCATTTG
GGCTCAATATAGCATGCCTAGTGTTTACAAAGCTTATGCGACAGCTTGTT
AAAAGATGGCGCTCTATGGGAATCAAATGTGCAATGTATCTCGATGATGG
TATAATTGGGAATAATTCTTATAATTCCCTGATTACAATGAGAGATCTAG
TGCTAAACGACCTACAATCTGCAGGGCTGACCGTTAACTTTACAAAGTCG
AGTCTAGTACCCGGGCGTACAAAAACTTGGTTGGGTTTTGAAATAAATAC
AGTCGATATGAACTTTGAAGTGCCAgcatcaaaaattcaaaaacttttga
aattaatttcacAAGCATTAGAAAACGAATTTCTATCAGCAAGAGAAGTT
TCCAGAATCGCAGGCAACCTTATTTCCATGGCAATCGCAATAGGCCCGCT
TGTCTATTTGCTTACAAAACAAATGTACAAATTCATAGCTTCAAGTTTCT
CTTGGGATAAAAGGCGATTAATAAATTTTGACGTTATTCAAGAACTTCAA
TTTTGGCAAACCAatttaaaaaacgtaaaagcttTTAGAATTAAAACCAA
ACCAGAAATTACGAAGATCATCTTTTCGGATGCAAGTGGTACCGGCTATG
GAGGTTACGTGGTAGAAAAGTTAGGAAACATCATAgcaaaaggaaatttt
tgtaaacaagaAATACAAACTAGCTCAACTTTTCGTGAACTTCTTGCAgt
taaatatattttgatgTCCTTTCCTAAACTTCTCGAAAACGAAATAATTG
AGTGGTTCACGGACAACgataatatttgtaaaataatcAGCCGCGGTAGT
ACAAGACAACACCTACAAAATCttgcaatagaaattttcaACCTCTGCTT
ATCCCATAACGTCGAAATTTACCCTACTTGGATACCAAGGGACATGAATA
AAACAGCAGATTTAATTTCCAAATCTATGGACACAGATAATTGGTCTATC
GATAATGAGACTTTTAATCACATAATCAAAAACTATGGACAAATTACTAT
AGATCGATTTTCCGATAACCAAAACGCTAAGTCAACTGTTTTTAATTCTC
GTGAGTATTGTCCAGGAACATCCGCCGTCAACGCTTTTTCCTGTAATTGG
GGAAACAATGAGTTCAACTGGCTTTGTCCTCCAATATCCCTCGTGGGTAA
GACAATTCAGCATCTGAAAAATTGTAGAGGTAAAGGCATATTACTTGTTC
CATTGTGGCCTTCTTCTTACTACTGGCCATTGCTGACATCGAACGGCAAA
GAATTCGaagtttttgtgaaaatgtttttagtaCTCGACCCTTATTATAT
CAATTATTCTAACACAAAATGTATATTTGACGGATTTGCAGGCTTCTATT
CTGTAGCATTATATATCGATATGTCCCAATAAATATTCAGTATTATTAAA
TTCCTAGTTATATCTCACTATTACCCCATCTAACACActcatttttcatt
ctttttatgTTGACAAACTTGGTTACATTTGCAAGATTTATTACATCACG
ATCAACGTTACACGTGGTGTGTTTTATGTGCCAATGCCTCTGTGCAAACA
CGTCTTTCGCGTCAATGTCTCTGTACAAACGTATTTGAGGAGTTCGTTCT
CCATCTTGAAGCCCATCGTCTTACAGATGGCAAAGTGCAAAGAATCAGCT
TACGCCAAATCCACTTTGAGGAAGTACAAACCTGCTTGGGAAAAATGGGT
GTCTTGGGCTGGTCCATTCGACGAGGTAAACTGTTGTCCTGCCGACCCTT
TTTACGTAGCGGTATATCTAAACGATCTTACGAATTCACTTGCAACCGAA
GGAACATTGACCGCAGCTATTCTAGGAATCAGATGGGGGCACTTAACCTC
AGGATTTGAATCTCCGACCGATCATTCCCTTGTTAAATTAGCACTAGAAG
GAGGTAAGAGAATAATAgctgagaaaaattctattggAGGGAAAAGACGC
AGAAAAGAACCCTTATCATCAGACATTATCAAAAGTCTAGCGGAAACATA
CGCCACATCAAGTAATCTTTTGGATATTCGTTTTACTCTAATGGTTATAT
TAGGATTTGCAGGTTTTTTCAGAATCAGCGAAATGCTAAGGATTCAGACC
AAAGATTCAACTTTCGATCAAACGGGCGCAACTATTTTTCTACCCATATC
GAAAACCGATCAACAACGCCAAGGTAATCTCGTCTTTATCAGTAGAACAA
AATCCAAATCCTGCCCAATCCACTGGCTCCGTAAATATTTATCACTTTCC
GGGCTGAGATTCAAATCAGAAGCTTACTTATTTTGTCGCCTTTACAAAAC
GAAATCTGGTCATAATGCACATGGTCATCTCCCCATATCGTACTCCACAG
CCTTATCATCGTTCAAAACCAACCTCTCAAAAATTACGGATTCGGCAAAA
TACGGTTTACATTCCCTCCGATCAGGGGGTGCTACAGAAGCCGCAAATAA
CGGAGTTTCTGATAGGCTTATCTCCAAACATGGTCGATGGTCCTCAAACA
CAAGTCGAAATATTTATATTAAAGACAAAACTGAAATCCGATTCAAAATT
TCTCAATCATTGGGAATTtagctttaaaatttttatttttttttttttgc
tactaTCATGTTCaactcataattttttcttttttatctctCGTGTTATT
GCAGACAAATACCAAACAAAAAGTAGCTATTATTGTGATTTATTGTTTGT
TTATTCGAAAAGGAGAAATAGCCGAGAAGCGAAGTTTCCAGCGAttgaaa
aaagctggaaaagcagaTTCTCGTGCATTTTCGCACGCTAATTACTTTTG
CATGCGTATCATTACGTCATN Run BLAST on NCBI transcript from alignment at sc0002478:988..5835- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040572 ID=TCONS_00040572|Name=TCONS_00040572|organism=Clytia hemisphaerica|type=transcript|length=4848bp|location=Sequence derived from alignment at sc0002478:988..5835- (Clytia hemisphaerica)
AGCGAAGTTTCCAGCGATTGAAAAAAGCTGGAAAAGCAGATTCTCGTGCA
TTTTCGCACGCTAATTACTTTTGCATGCGCATCATTACGTCATAATGGGA
GCATGCGCTGTGAAAACGTTTTAAATAAGGCGTTTGAATTACAAACATCC
TCGCTGCATTCACTCATCAAACTAAGCGTACTGTGTATGTGTGTGTGAGA
AAGAAATTCTTTTTAAAAAATGTCTAAAAAACCAAGTGAAAAATCAAAAT
CTACTGATGGTGGAACTACTTCTGGAAATGAAACACTAACTGTTACTTAC
GAGCAGTTGAGAACTCTGGTTAACGATGTTGTTGAAAAAGACTTTGGCCC
ACAAATCATGAAAAGCACCAAAGACACAGTGAAAGCTGCTTCTGTGCAAT
CTGCTGAGAATCATTCGACCAATCTGGCTAAGCTCAAAAAGAAACTCGAA
AGGAAGAGAGCCAACGACAACATCGTACTCAAGAAAACCGGCCATCAAGA
TCAATTTGCTCATAATACAGCAGTCTTGGAAACGATTGAGGATACCCTCG
AATTCATGGAAGAGACGGATGTTGATGGGATGAAAGAAGCTTTAAATAAA
GGTAAGAGATTACTAGAGACTCGTATTCAACATATTAGAATCGCCGACAC
ACACGGGTGGCTTACTGTCAACGAATTTAAGACAAGCGATCTTACCTCCG
GAGACGTGGAAGAAAAAAGGCTTAAGAGGGCTATTAAAAACGCAGAGCAA
GTTAAACAACGTATTTATAAAAAGCCAAGAATAGAGGAACCTAATAGAGA
ATACTCCAAGGCAATCAAATCTAGAACTGAACAAAGGAGCCGTATGGATG
AGGTGGTATGTTATTCATGCAAAAGAGTAGGACACTACGTCAGCCACTGT
CCTTTTCCTGCATCTTCGTCACCTTTGGCCTACTCGACAAAATTAATGTC
CTCATCAACAGCAACAAAAAGTTCATCGTCCAATTCAAATTCTAAATCGT
CAAGGGATGGAAAATAACTTTAACAAAAAATATAAAATTTCAGAACATTC
TTTTTCAACTTTTGAAATACAGTAGCTATTTTACATTGCGTTAGTTTTTA
AAAATTGATTACAATTTTGTCTTGTTGTAATTAGATTAGTATTGATCTGA
GCTCATAATATAAATGATCTAACTTCTCTCCTTCGTTTCGCTAAATTACC
TCAATTATATATAAATTGTTTTGATTCCTCCACTTTGATTTATACAGAAA
ACGTTTCGTTTTACTTAATTAATTTTCTTTGAAAGACTGTTAAGCCATTT
GTGCTTTCTTTTCATTGCATCACATTTTCGTTTGATACCACTACAGACCG
ATTTTGGGAATTCGAACAATCTGCTGAAAGTATCTCCGTCGCCGGAAAGA
TTCAAAAATTTTCAGAATTTTGGGAAAAAGACTTGAAAGCATCCAACTTC
GCCTTGAATATCGTACACGAAGGATACAAAATACCTTTCGAGTCAGAACC
ACCAAAATTTTTCGCAAAAAACAACGCTTCCAGTCTAAAAAATCGAACTT
TCGTTACGGATAGTATCACACAACTTTTAAAGGACGATTGCATCAAAAAA
GTCGACGAACCGCCTCATTGTGTTAATCCTTTGACTGTTGCAGAAGGAAA
CTCAAAACTAAGACTCGTTCTGGACCTTAGACACGTCAACAGATATATCA
AGCCAAAAAAGTTCAAGTACGAAAACTTAAAACAGGTTTCAGAACTCACG
AACAAAAACGACTTTTTAATTACTTTCGATCTTAAGAGTGGGTATCATCA
CGTTCCAATCAATCCAGATTTTCAAACTTTTTTGGGATTCGCCTGGGACA
TCGACGGCAAAAGACAGTATTTCGTATTCAAAGTCTTACCATTTGGGCTC
AATATAGCATGCCTAGTGTTTACAAAGCTTATGCGACAGCTTGTTAAAAG
ATGGCGCTCTATGGGAATCAAATGTGCAATGTATCTCGATGATGGTATAA
TTGGGAATAATTCTTATAATTCCCTGATTACAATGAGAGATCTAGTGCTA
AACGACCTACAATCTGCAGGGCTGACCGTTAACTTTACAAAGTCGAGTCT
AGTACCCGGGCGTACAAAAACTTGGTTGGGTTTTGAAATAAATACAGTCG
ATATGAACTTTGAAGTGCCAGCATCAAAAATTCAAAAACTTTTGAAATTA
ATTTCACAAGCATTAGAAAACGAATTTCTATCAGCAAGAGAAGTTTCCAG
AATCGCAGGCAACCTTATTTCCATGGCAATCGCAATAGGCCCGCTTGTCT
ATTTGCTTACAAAACAAATGTACAAATTCATAGCTTCAAGTTTCTCTTGG
GATAAAAGGCGATTAATAAATTTTGACGTTATTCAAGAACTTCAATTTTG
GCAAACCAATTTAAAAAACGTAAAAGCTTTTAGAATTAAAACCAAACCAG
AAATTACGAAGATCATCTTTTCGGATGCAAGTGGTACCGGCTATGGAGGT
TACGTGGTAGAAAAGTTAGGAAACATCATAGCAAAAGGAAATTTTTGTAA
ACAAGAAATACAAACTAGCTCAACTTTTCGTGAACTTCTTGCAGTTAAAT
ATATTTTGATGTCCTTTCCTAAACTTCTCGAAAACGAAATAATTGAGTGG
TTCACGGACAACGATAATATTTGTAAAATAATCAGCCGCGGTAGTACAAG
ACAACACCTACAAAATCTTGCAATAGAAATTTTCAACCTCTGCTTATCCC
ATAACGTCGAAATTTACCCTACTTGGATACCAAGGGACATGAATAAAACA
GCAGATTTAATTTCCAAATCTATGGACACAGATAATTGGTCTATCGATAA
TGAGACTTTTAATCACATAATCAAAAACTATGGACAAATTACTATAGATC
GATTTTCCGATAACCAAAACGCTAAGTCAACTGTTTTTAATTCTCGTGAG
TATTGTCCAGGAACATCCGCCGTCAACGCTTTTTCCTGTAATTGGGGAAA
CAATGAGTTCAACTGGCTTTGTCCTCCAATATCCCTCGTGGGTAAGACAA
TTCAGCATCTGAAAAATTGTAGAGGTAAAGGCATATTACTTGTTCCATTG
TGGCCTTCTTCTTACTACTGGCCATTGCTGACATCGAACGGCAAAGAATT
CGAAGTTTTTGTGAAAATGTTTTTAGTACTCGACCCTTATTATATCAATT
ATTCTAACACAAAATGTATATTTGACGGATTTGCAGGCTTCTATTCTGTA
GCATTATATATCGATATGTCCCAATAAATATTCAGTATTATTAAATTCCT
AGTTATATCTCACTATTACCCCATCTAACACACTCATTTTTCATTCTTTT
TATGTTGACAAACTTGGTTACATTTGCAAGATTTATTACATCACGATCAA
CGTTACACGTGGTGTGTTTTATGTGCCAATGCCTCTGTGCAAACACGTCT
TTCGCGTCAATGTCTCTGTACAAACGTATTTGAGGAGTTCGTTCTCCATC
TTGAAGCCCATCGTCTTACAGATGGCAAAGTGCAAAGGTACGAAATTAAC
TTTTTTTATTTATTTCATTTTTCGACAGATCATGCCCCCCCCAAGTTTGA
AAGAAAAACTCGCAACAATTAGGAACGAAAGTTTGAAACAAAAAGCCGAA
GGTCTTCCCGTTTTATTAGAATCAGCTTACGCCAAATCCACTTTGAGGAA
GTACAAACCTGCTTGGGAAAAATGGGTGTCTTGGGCTGGTCCATTCGACG
AGGTAAACTGTTGTCCTGCCGACCCTTTTTACGTAGCGGTATATCTAAAC
GATCTTACGAATTCACTTGCAACCGAAGGAACATTGACCGCAGCTATTCT
AGGAATCAGATGGGGGCACTTAACCTCAGGATTTGAATCTCCGACCGATC
ATTCCCTTGTTAAATTAGCACTAGAAGGAGGTAAGAGAATAATAGCTGAG
AAAAATTCTATTGGAGGGAAAAGACGCAGAAAAGAACCCTTATCATCAGA
CATTATCAAAAGTCTAGCGGAAACATACGCCACATCAAGTAATCTTTTGG
ATATTCGTTTTACTCTAATGGTTATATTAGGATTTGCAGGTTTTTTCAGA
ATCAGCGAAATGCTAAGGATTCAGACCAAAGATTCAACTTTCGATCAAAC
GGGCGCAACTATTTTTCTACCCATATCGAAAACCGATCAACAACGCCAAG
GTAATCTCGTCTTTATCAGTAGAACAAAATCCAAATCCTGCCCAATCCAC
TGGCTCCGTAAATATTTATCACTTTCCGGGCTGAGATTCAAATCAGAAGC
TTACTTATTTTGTCGCCTTTACAAAACGAAATCTGGTCATAATGCACATG
GTCATCTCCCCATATCGTACTCCACAGCCTTATCATCGTTCAAAACCAAC
CTCTCAAAAATTACGGATTCGGCAAAATACGGTTTACATTCCCTCCGATC
AGGGGGTGCTACAGAAGCCGCAAATAACGGAGTTTCTGATAGGCTTATCT
CCAAACATGGTCGATGGTCCTCAAACACAAGTCGAAATATTTATATTAAA
GACAAAACTGAAATCCGATTCAAAATTTCTCAATCATTGGGAATTTAGCT
TTAAAATTTTTATTTTTTTTTTTTTGCTACTATCATGTTCAACTCATAAT
TTTTTCTTTTTTATCTCTCGTGTTATTGCAGACAAATACCAAACAAAAAG
TAGCTATTATTGTGATTTATTGTTTGTTTATTCGAAAAGGAGAAATAGCC
GAGAAGCGAAGTTTCCAGCGATTGAAAAAAGCTGGAAAAGCAGATTCTCG
TGCATTTTCGCACGCTAATTACTTTTGCATGCGTATCATTACGTCATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040572-exon-sc0002478-1575043694:5235..5835 | TCONS_00040572-exon-sc0002478-1575043694:5235..5835 | Clytia hemisphaerica | exon |
| TCONS_00040572-exon-sc0002478-1575043694:2299..4489 | TCONS_00040572-exon-sc0002478-1575043694:2299..4489 | Clytia hemisphaerica | exon |
| TCONS_00040572-exon-sc0002478-1575043694:988..2166 | TCONS_00040572-exon-sc0002478-1575043694:988..2166 | Clytia hemisphaerica | exon |
| TCONS_00040572-exon-sc0002478-1510915933:5235..5835 | TCONS_00040572-exon-sc0002478-1510915933:5235..5835 | Clytia hemisphaerica | exon |
| TCONS_00040572-exon-sc0002478-1510915933:2299..4489 | TCONS_00040572-exon-sc0002478-1510915933:2299..4489 | Clytia hemisphaerica | exon |
| TCONS_00040572-exon-sc0002478-1510915933:988..2166 | TCONS_00040572-exon-sc0002478-1510915933:988..2166 | Clytia hemisphaerica | exon |
| TCONS_00040572-exon-sc0002478-1491911889:5235..5835 | TCONS_00040572-exon-sc0002478-1491911889:5235..5835 | Clytia hemisphaerica | exon |
| TCONS_00040572-exon-sc0002478-1491911889:2299..4489 | TCONS_00040572-exon-sc0002478-1491911889:2299..4489 | Clytia hemisphaerica | exon |
| TCONS_00040572-exon-sc0002478-1491911889:988..2166 | TCONS_00040572-exon-sc0002478-1491911889:988..2166 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002478 | supercontig | sc0002478:988..5835 - |
Blast
The following BLAST results are available for this feature:
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