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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040571 ID=TCONS_00040571|Name=TCONS_00040571|organism=Clytia hemisphaerica|type=transcript|length=930bp
GCAAGATTTATTACATCACGATCAACGTTACACGTGGTGTGTTTTATGTG
CCAATGCCTCTGTGCAAACACGTCTTTCGCGTCAATGTCTCTGTACAAAC
GTATTTGAGGAGTTCGTTCTCCATCTTGAAGCCCATCGTCTTACAGATGG
CAAAGTGCAAAGGATTTGCAGGTTTTTTCAGAATCAGCGAAATGCTAAGG
ATTCAGACCAAAGATTCAACTTTCGATCAAACGGGCGCAACTATTTTTCT
ACCCATATCGAAAACCGATCAACAACGCCAAGGTAATCTCGTCTTTATCA
GTAGAACAAAATCCAAATCCTGCCCAATCCACTGGCTCCGTAAATATTTA
TCACTTTCCGGGCTGAGATTCAAATCAGAAGCTTACTTATTTTGTCGCCT
TTACAAAACGAAATCTGGTCATAATGCACATGGTCATCTCCCCATATCGT
ACTCCACAGCCTTATCATCGTTCAAAACCAACCTCTCAAAAATTACGGAT
TCGGCAAAATACGGTTTACATTCCCTCCGATCAGGGGGTGCTACAGAAGC
CGCAAATAACGGAGTTTCTGATAGGCTTATCTCCAAACATGGTCGATGGT
CCTCAAACACAAGTCGAAATATTTATATTAAAGACAAAACTGAAATCCGA
TTCAAAATTTCTCAATCATTGGGAATTtagctttaaaatttttatttttt
tttttttgctactaTCATGTTCaactcataattttttcttttttatctct
CGTGTTATTGCAGACAAATACCAAACAAAAAGTAGCTATTATTGTGATTT
ATTGTTTGTTTATTCGAAAAGGAGAAATAGCCGAGAAGCGAAGTTTCCAG
CGAttgaaaaaagctggaaaagcagaTTCTCGTGCATTTTCGCACGCTAA
TTACTTTTGCATGCGTATCATTACGTCATN Run BLAST on NCBI transcript from alignment at sc0002478:988..2460- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040571 ID=TCONS_00040571|Name=TCONS_00040571|organism=Clytia hemisphaerica|type=transcript|length=1473bp|location=Sequence derived from alignment at sc0002478:988..2460- (Clytia hemisphaerica)
GCAAGATTTATTACATCACGATCAACGTTACACGTGGTGTGTTTTATGTG
CCAATGCCTCTGTGCAAACACGTCTTTCGCGTCAATGTCTCTGTACAAAC
GTATTTGAGGAGTTCGTTCTCCATCTTGAAGCCCATCGTCTTACAGATGG
CAAAGTGCAAAGGTACGAAATTAACTTTTTTTATTTATTTCATTTTTCGA
CAGATCATGCCCCCCCCAAGTTTGAAAGAAAAACTCGCAACAATTAGGAA
CGAAAGTTTGAAACAAAAAGCCGAAGGTCTTCCCGTTTTATTAGAATCAG
CTTACGCCAAATCCACTTTGAGGAAGTACAAACCTGCTTGGGAAAAATGG
GTGTCTTGGGCTGGTCCATTCGACGAGGTAAACTGTTGTCCTGCCGACCC
TTTTTACGTAGCGGTATATCTAAACGATCTTACGAATTCACTTGCAACCG
AAGGAACATTGACCGCAGCTATTCTAGGAATCAGATGGGGGCACTTAACC
TCAGGATTTGAATCTCCGACCGATCATTCCCTTGTTAAATTAGCACTAGA
AGGAGGTAAGAGAATAATAGCTGAGAAAAATTCTATTGGAGGGAAAAGAC
GCAGAAAAGAACCCTTATCATCAGACATTATCAAAAGTCTAGCGGAAACA
TACGCCACATCAAGTAATCTTTTGGATATTCGTTTTACTCTAATGGTTAT
ATTAGGATTTGCAGGTTTTTTCAGAATCAGCGAAATGCTAAGGATTCAGA
CCAAAGATTCAACTTTCGATCAAACGGGCGCAACTATTTTTCTACCCATA
TCGAAAACCGATCAACAACGCCAAGGTAATCTCGTCTTTATCAGTAGAAC
AAAATCCAAATCCTGCCCAATCCACTGGCTCCGTAAATATTTATCACTTT
CCGGGCTGAGATTCAAATCAGAAGCTTACTTATTTTGTCGCCTTTACAAA
ACGAAATCTGGTCATAATGCACATGGTCATCTCCCCATATCGTACTCCAC
AGCCTTATCATCGTTCAAAACCAACCTCTCAAAAATTACGGATTCGGCAA
AATACGGTTTACATTCCCTCCGATCAGGGGGTGCTACAGAAGCCGCAAAT
AACGGAGTTTCTGATAGGCTTATCTCCAAACATGGTCGATGGTCCTCAAA
CACAAGTCGAAATATTTATATTAAAGACAAAACTGAAATCCGATTCAAAA
TTTCTCAATCATTGGGAATTTAGCTTTAAAATTTTTATTTTTTTTTTTTT
GCTACTATCATGTTCAACTCATAATTTTTTCTTTTTTATCTCTCGTGTTA
TTGCAGACAAATACCAAACAAAAAGTAGCTATTATTGTGATTTATTGTTT
GTTTATTCGAAAAGGAGAAATAGCCGAGAAGCGAAGTTTCCAGCGATTGA
AAAAAGCTGGAAAAGCAGATTCTCGTGCATTTTCGCACGCTAATTACTTT
TGCATGCGTATCATTACGTCATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040571-exon-sc0002478-1575043694:2299..2460 | TCONS_00040571-exon-sc0002478-1575043694:2299..2460 | Clytia hemisphaerica | exon |
| TCONS_00040571-exon-sc0002478-1575043694:988..1755 | TCONS_00040571-exon-sc0002478-1575043694:988..1755 | Clytia hemisphaerica | exon |
| TCONS_00040571-exon-sc0002478-1510915933:2299..2460 | TCONS_00040571-exon-sc0002478-1510915933:2299..2460 | Clytia hemisphaerica | exon |
| TCONS_00040571-exon-sc0002478-1510915933:988..1755 | TCONS_00040571-exon-sc0002478-1510915933:988..1755 | Clytia hemisphaerica | exon |
| TCONS_00040571-exon-sc0002478-1491911889:2299..2460 | TCONS_00040571-exon-sc0002478-1491911889:2299..2460 | Clytia hemisphaerica | exon |
| TCONS_00040571-exon-sc0002478-1491911889:988..1755 | TCONS_00040571-exon-sc0002478-1491911889:988..1755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002478 | supercontig | sc0002478:988..2460 - |
Blast
The following BLAST results are available for this feature:
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