TCONS_00040567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040567
Unique NameTCONS_00040567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040567 ID=TCONS_00040567|Name=TCONS_00040567|organism=Clytia hemisphaerica|type=transcript|length=682bp
ATCAAGTGAGGGTCTCACTCCAACCTATCTTTATCTTTCGACCTCTCATC
TCTCTCTACTTTTGATACCTTTAATcagtttcaagtttttattttttttc
atcggGCTGGGCCTTAACGCCGCTAGGCTTCTTGTTTTATTATAACCGAG
CTTGAAAATCCGTACGCggaacttgtaacatatattatgtgtataattat
atCAGTTGACTTGAATCATGaaacattactcacatttcactggatgcatt
ttcactgtgaaattatccgcaaaattcgCTGACCGCGTTTCGAGACGGAG
GCTATTTACATTTCCTTCTTTCTTGGCGACAGAGGTGAACGTTTGAACTT
GAAAATATGGTGCACTTGAGAAATATTATATTTGTAATTATCAATTGTGC
AATTGCAGCACTTTTTGCTGTCTCTTGTGGAGAGGTTGGGTGGTATGtta
tgaaagttaaaaaaaatggccAGACAGGAGAGGCTTCGATCGGTTTGTGG
AAAAGTTGTGTGTCAGTTGCATCAGTCAAAGTATGTTTTGACTTGCCTGA
AGAAGCTTTAAGTGACAGCATGGAGGCGATCCGTGGATGTAGCGTAATTG
CTACAGGAATCAGTATTGTTGTTCTTTTGTTTGCATGTACTGCCACCGCC
GTGAGTGAAAGAAAGGTCAAATATGCTGGCTA
Run BLAST on NCBI

protein sequence of TCONS_00040567-protein

>TCONS_00040567-protein ID=TCONS_00040567-protein|Name=TCONS_00040567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MVHLRNIIFVIINCAIAALFAVSCGEVGWYVMKVKKNGQTGEASIGLWKS
CVSVASVKVCFDLPEEALSDSMEAIRGCSVIATGISIVVLLFACTATAVS
ERKVKYAG
Run BLAST on NCBI

transcript from alignment at sc0002475:24..1127-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040567 ID=TCONS_00040567|Name=TCONS_00040567|organism=Clytia hemisphaerica|type=transcript|length=1104bp|location=Sequence derived from alignment at sc0002475:24..1127- (Clytia hemisphaerica)
ATCAAGTGAGGGTCTCACTCCAACCTATCTTTATCTTTCGACCTCTCATC
TCTCTCTACTTTTGATACCTTTAATCAGTTTCAAGTTTTTATTTTTTTTC
ATCGGGCTGGGCCTTAACGCCGCTAGGCTTCTTGTTTTATTATAACCGAG
CTTGAAAATCCGTACGCGGAACTTGTAACATATATTATGTGTATAATTAT
ATCAGTTGACTTGAATCATGAAACATTACTCACATTTCACTGGATGCATT
TTCACTGTGAAATTATCCGCAAAATTCGCTGACCGCGTTTCGAGACGGAG
GCTATTTACATTTCCTTCTTTCTTGGCGACAGAGGTGAACGTTTGAACTT
GAAAATATGGTGCACTTGAGAAATATTATATTTGTAATTATCAATTGTGC
AATTGCAGCACTTTTTGCTGTCTCTTGTGGAGAGGTTGGGTGGTATGTTA
TGAAAGTTAAAAAAAATGGCCAGACAGGAGAGGGTGAGTTGAATACCACG
ATTTCAATTTAATTCAAAATATATTGCAGGAAGTTCTACAAGTTTAAAAT
TCAGATTTCTACATTGACTACAGCATTTTATTATAGTTTCGAGGGACCCC
TTTCGAACCATTGAATAAAGATAGTATTTAGGAACAAAACGAAAATTCTA
GACACTTAAAAAATCTATTAAATTAGATAATAAGGAATCCCTAACCTCCC
CCAGAAGTTTGCCAACGGAAGTTTTCCCCAGAAATTTGCCACCTGGAAAT
TTGACACCGGAACTTTTCCCCAAGGAATGCAGGTATATGTTGGATCTCAA
TGCTGGTCAAAATTAGTGGCAGGCAATTTTCCTGTCACTATCAAAATATA
TCAGAAGAAACTTTTTGTCCAATAAAATTTTTCTTTTTCTTTCACAATCT
TACAGCTTCGATCGGTTTGTGGAAAAGTTGTGTGTCAGTTGCATCAGTCA
AAGTATGTTTTGACTTGCCTGAAGAAGCTTTAAGTGACAGCATGGAGGCG
ATCCGTGGATGTAGCGTAATTGCTACAGGAATCAGTATTGTTGTTCTTTT
GTTTGCATGTACTGCCACCGCCGTGAGTGAAAGAAAGGTCAAATATGCTG
GCTA

Coding sequence (CDS) from alignment at sc0002475:24..1127-

>TCONS_00040567 ID=TCONS_00040567|Name=TCONS_00040567|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0002475:24..1127- (Clytia hemisphaerica)
CTTCGATCGGTTTGTGGAAAAGTTGTGTGTCAGTTGCATCAGTCAAAGTA
TGTTTTGACTTGCCTGAAGAAGCTTTAAGTGACAGCATGGAGGCGATCCG
TGGATGTAGCGTAATTGCTACAGGAATCAGTATTGTTGTTCTTTTGTTTG
CATGTACTGCCACCGCCGTGAGTGAAAGAAAGGTCAAATATGCTGGCATG
GTGCACTTGAGAAATATTATATTTGTAATTATCAATTGTGCAATTGCAGC
ACTTTTTGCTGTCTCTTGTGGAGAGGTTGGGTGGTATGTTATGAAAGTTA
AAAAAAATGGCCAGACAGGAGAGGCTTCGATCGGTTTGTGGAAAAGTTGT
GTGTCAGTTGCATCAGTCAAAGTATGTTTTGACTTGCCTGAAGAAGCTTT
AAGTGACAGCATGGAGGCGATCCGTGGATGTAGCGTAATTGCTACAGGAA
TCAGTATTGTTGTTCTTTTGTTTGCATGTACTGCCACCGCCGTGAGTGAA
AGAAAGGTCAAATATGCTGGCATGGTGCACTTGAGAAATATTATATTTGT
AATTATCAATTGTGCAATTGCAGCACTTTTTGCTGTCTCTTGTGGAGAGG
TTGGGTGGTATGTTATGAAAGTTAAAAAAAATGGCCAGACAGGAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024690XLOC_024690Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040567-proteinTCONS_00040567-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040567-exon-sc0002475-1575043694:645..1127TCONS_00040567-exon-sc0002475-1575043694:645..1127Clytia hemisphaericaexon
TCONS_00040567-exon-sc0002475-1575043694:24..222TCONS_00040567-exon-sc0002475-1575043694:24..222Clytia hemisphaericaexon
TCONS_00040567-exon-sc0002475-1510915933:645..1127TCONS_00040567-exon-sc0002475-1510915933:645..1127Clytia hemisphaericaexon
TCONS_00040567-exon-sc0002475-1510915933:24..222TCONS_00040567-exon-sc0002475-1510915933:24..222Clytia hemisphaericaexon
TCONS_00040567-exon-sc0002475-1491911889:645..1127TCONS_00040567-exon-sc0002475-1491911889:645..1127Clytia hemisphaericaexon
TCONS_00040567-exon-sc0002475-1491911889:24..222TCONS_00040567-exon-sc0002475-1491911889:24..222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002475supercontigsc0002475:24..1127 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.150012	0	0.169851	0.0830863	0.63677	0	0.24436	0.122481	0.334905	0.592804	0	0.14986	0.656489	0.375424	0.214511	0.929057	0.675911	0.331871	0.117059	0.212201	0.208221	0.865102	0.33231	0.858559	0.27468	0.6973	0.102848	0.109762	0.333002	0.169638
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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