TCONS_00040547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040547
Unique NameTCONS_00040547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1019

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040547 ID=TCONS_00040547|Name=TCONS_00040547|organism=Clytia hemisphaerica|type=transcript|length=1019bp
CCTGGGAGAAGATGAACTTGAAGGGCCAAGAGCTAAAGTGTCTTGTCTAG
AACTTTTTGAAGAGGACAATGCAATAAACTTAAGATCAGATCTAGCGGAT
CAAATAAACAACTACATTCGCAGACATGTCTCGGACAAAATTCTAAAAGA
GAAGATTTTGGAAGACTATCCGATTCCATCTAACATAGACAAACCTCAGA
AATTGGATATGTTTATGAAGGACACTTTAacctcttacaaagcatttgCT
ATGGCGAGAGATAGCCAATTGTATAACATTCAGTCTGGTATACATAAGAT
TTTTGGACCACTGGCCAATCTTTGGGAATTGGCTGAGGAGGACAAGAAAG
ACCTGCTTTCTAAGGAGGATGTCCCAGACGAGGTGAAGGAAAAGATGGAG
GAAATGTGCCGTTCCTTTACCAATGTTATTGCACTTGTCGGACAGGCGTC
GAACAAAGTTGCATATTATAGACGTTTAAACATGGTTGAAAATATGACAG
GCGACTCTAAGAGAGCCAAGTAACTTCtaagtgaaaatgaagaagttttc
aatgaaaaatcttGCAACCTTTTTGGTGAAAAGTTTGAGGATCTCATTGA
CAAGTTAGccaaatccaaaaagaaatcaaaagatgcATTGTCTAATCTTG
CATCACCCAAGCCGGTATCCAAGAAGCCCTTTCACAGGAGCTCTCTATCA
AATGCAGATCAAGGAGGAGATAGGGGGCGTGGAAACCGAGGTGCCTTCAG
TGGTTGGTTGGCCAGGAGTCAGTCATCCTTCAACAAAAGAGGTAATTCTG
CTTTCAGAGGACGCGGACGTGGCCGAGGAAGATTTGGTGGATGATTGAAA
TATTATTTCAATGAAAGATACGATTCTTAAACTAAATATTGAtattgttt
ctttctttctttatgtTTTATCCCGGACTTGTCCTAGATTTACGATGCGA
GTGAGGGCGGTAACCAATATTAGATCGTTGGCTTcgattttattcataaa
atcgGGATTGCACTGCGGG
Run BLAST on NCBI

transcript from alignment at sc0002463:5482..9294+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040547 ID=TCONS_00040547|Name=TCONS_00040547|organism=Clytia hemisphaerica|type=transcript|length=3813bp|location=Sequence derived from alignment at sc0002463:5482..9294+ (Clytia hemisphaerica)
CCTGGGAGAAGATGAACTTGAAGGGCCAAGAGCTAAAGTGTCTTGTCTAG
AACTTTTTGAAGAGGACAATGCAATAAACTTAAGATCAGATCTAGCGGAT
CAAATAAACAACTACATTCGCAGACATGTCTCGGACAAAATTCTAAAAGA
GAAGATTTTGGAAGACTATCCGATTCCATCTAACATAGACAAACCTCAGA
AATTGGATATGTTTATGAAGGACACTTTAacctcttacaaagcatttgCT
ATGGCGAGAGATAGCCAATTGTATAACATTCAGTCTGGTATACATAAGAT
TTTTGGACCACTGGCCAATCTTTGGGAATTGGCTGAGGAGGACAAGAAAG
ACCTGCTTTCTAAGGAGGATGTCCCAGACGAGGTGAAGGAAAAGATGGAG
GAAATGTGCCGTTCCTTTACCAATGTTATTGCACTTGTCGGACAGGCGTC
GAACAAAGTTGCATATTATAGACGTTTAAACATGGTTGAAAATATGACAG
GCGACTCTAAGAGAGCCAAGTAACTTCtaagtgaaaatgaagaagttttc
aatgaaaaatcttGCAACCTTTTTGGTGAAAAGTTTGAGGATCTCATTGA
CAAGTTAGccaaatccaaaaagaaatcaaaagatgcATTGTCTAATCTTG
CATCACCCAAGCCGGTATCCAAGAAGCCCTTTCACAGGAGCTCTCTATCA
AATGCAGATCAAGGAGGAGATAGGGGGCGTGGAAACCGAGGTGCCTTCAG
TGGTTGGTTGGCCAGGAGTCAGTCATCCTTCAACAAAAGAGGTAAGCCAT
CCTCCTTCAAATCTTCTGGAAATTCTACCAATGGGGAAATTTCCAAATGT
TCTCCCAGCAATAAAGGGGCTTTTTCCAAAGGAGATCCCTCAAACACCAT
TAGCAGGAAGGACAAAGTTCTTCCTGGAAAACTGGAAGAAACTAACAAGC
GATCAGATTTTATTAGAGATGGTGAGCGGGTACAGAATCCCTTTTCTAGA
AAACCCTCCCCCAGTTTTGAGACAAAACCCTTACGTTTCTCAAGTAAGTC
AGGACATGAGGGAATTAATCCAGGAAGAGGTGAAAAGTATGTTGCTCAAA
GGGGCAATCGTGACAGTGACACCATCACCAGAACAGTTTGTCAGCCCTCT
ATTTTTGGTGCCAAAGAAAGACCAGGGGCAAAGGCCAGTGATAAACCTGA
AAAACTTGAACAAATTTATTCCATACGAACACTTCAAGATGGAGGGATTA
TTTTTAGTGAAGGAAATTCTGAAGCAGGGGGACTGGATGTTAAAAATCGA
TCTCAAGGATGCATATTTCGCCATACCTTTAGATCAGCATTCTCAGAGGT
TTGTGAGATTCGAATGGGACAAGACCCTATACCAATTCCAGTGTCTCTGT
TTCGGTTTATCTCCAGCTCCAAgagtgttttcaaaaattctgaagGTTCC
AATTTCACTTCTGAGGAGATTAGGGAttcgtttaatcatatttctgGACG
ATATCCTGCTAATAGCCTCGACTCCAGAGGAGTTGAGACAGATGAGGGAC
ACAACTATTTTCCTTTTGCAAAGTCTTGGGTTTCTAATAAATGTCAAGAA
GTCAGTTTTCGAACCAACCCAAAAGATAGAATTCTTGGGGATGATAATAG
ACTCAATCAAAATGACTCTAAGCCTTCCAGAAGAGAAGGTGGTTGCCATA
AAGAAGCAATGCTCAGAAATGTTAGAAAAGGAAAAGGTTCCCCTGAGGGA
GTTATCGAAACTAGTGGGCAGGTTGTCTGCCTCAATGCTAGCAATATTAC
CAGCACCCCTTCAATACAGGAGCCTTCAACGACAACAGATTTCAGAGTTG
AAGGAACAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNTCCcgattttatgaataaaatcgAAGC
CAACGGTCTAATATTGCCCGCCCACCATCTCCCTTATTGGTGTTTCATTT
CATaaaatatgttttattttttctctaCTTGTCAGGTAATTCTGCTTTCA
GAGGACGCGGACGTGGCCGAGGAAGATTTGGTGGATGATTGAAATATTAT
TTCAATGAAAGATACGATTCTTAAACTAAATATTGAtattgtttctttct
ttctttatgtTTTATCCCGGACTTGTCCTAGATTTACGATGCGAGTGAGG
GCGGTAACCAATATTAGATCGTTGGCTTcgattttattcataaaatcgGG
ATTGCACTGCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024670XLOC_024670Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040547-exon-sc0002463-1491911889:5482..6272TCONS_00040547-exon-sc0002463-1491911889:5482..6272Clytia hemisphaericaexon
TCONS_00040547-exon-sc0002463-1510915933:5482..6272TCONS_00040547-exon-sc0002463-1510915933:5482..6272Clytia hemisphaericaexon
TCONS_00040547-exon-sc0002463-1575043694:5482..6272TCONS_00040547-exon-sc0002463-1575043694:5482..6272Clytia hemisphaericaexon
TCONS_00040547-exon-sc0002463-1491911889:9067..9294TCONS_00040547-exon-sc0002463-1491911889:9067..9294Clytia hemisphaericaexon
TCONS_00040547-exon-sc0002463-1510915933:9067..9294TCONS_00040547-exon-sc0002463-1510915933:9067..9294Clytia hemisphaericaexon
TCONS_00040547-exon-sc0002463-1575043694:9067..9294TCONS_00040547-exon-sc0002463-1575043694:9067..9294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002463supercontigsc0002463:5482..9294 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.165335	0	0.165077	1.82184	1.57242	1.27623	1.96139	0.375542	0	0.281756	0.179673	0.493885	0	0	0.497355	0.163802	0.0935283	0.282989	0.179775	0.23265	0.12734	0.233714	0.137624	0.131722	0.462345	0.150221	0.21842	0.0755423	0.0798413
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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