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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040545 ID=TCONS_00040545|Name=TCONS_00040545|organism=Clytia hemisphaerica|type=transcript|length=2033bp
tcatttcataaaatCTCCGCCCAATCTAATATTGGTTACCGCCCTCACTC
GGATAGTAAATCTAGGACATCGTCCTAAACTACCCCACTTAGCTTTCAAC
TcgcaaaacaagatggcggaacAAGAGATTGCCAACAAAGAGAAACAGGC
AGCTGGCTCAAGTAAGAGAAGTGCTGACGTCCTGGGAGAAGATGAACTTG
AAGGGCCAAGAGCTAAAGTGTCTTGTCTAGAACTTTTTGAAGAGGACAAT
GCAATAAACTTAAGATCAGATCTAGCGGATCAAATAAACAACTACATTCG
CAGACATGTCTCGGACAAAATTCTAAAAGAGAAGATTTTGGAAGACTATC
CGATTCCATCTAACATAGACAAACCTCAGAAATTGGATATGTTTATGAAG
GACACTTTAacctcttacaaagcatttgCTATGGCGAGAGATAGCCAATT
GTATAACATTCAGTCTGGTATACATAAGATTTTTGGACCACTGGCCAATC
TTTGGGAATTGGCTGAGGAGGACAAGAAAGACCTGCTTTCTAAGGAGGAT
GTCCCAGACGAGGTGAAGGAAAAGATGGAGGAAATGTGCCGTTCCTTTAC
CAATGTTATTGCACTTGTCGGACAGGCGTCGAACAAAGTTGCATATTATA
GACGTTTAAACATGGTTGAAAATATGACAGGCGACTCTAAGAGAGCCAAG
TAACTTCtaagtgaaaatgaagaagttttcaatgaaaaatcttGCAACCT
TTTTGGTGAAAAGTTTGAGGATCTCATTGACAAGTTAGccaaatccaaaa
agaaatcaaaagatgcATTGTCTAATCTTGCATCACCCAAGCCGGTATCC
AAGAAGCCCTTTCACAGGAGCTCTCTATCAAATGCAGATCAAGGAGGAGA
TAGGGGGCGTGGAAACCGAGGTGCCTTCAGTGGTTGGTTGGCCAGGAGTC
AGTCATCCTTCAACAAAAGAGGTAAGCCATCCTCCTTCAAATCTTCTGGA
AATTCTACCAATGGGGAAATTTCCAAATGTTCTCCCAGCAATAAAGGGGC
TTTTTCCAAAGGAGATCCCTCAAACACCATTAGCAGGAAGGACAAAGTTC
TTCCTGGAAAACTGGAAGAAACTAACAAGCGATCAGATTTTATTAGAGAT
GGTGAGCGGGTACAGAATCCCTTTTCTAGAAAACCCTCCCCCAGTTTTGA
GACAAAACCCTTACGTTTCTCAAGTAAGTCAGGACATGAGGGAATTAATC
CAGGAAGAGGTGAAAAGTATGTTGCTCAAAGGGGCAATCGTGACAGTGAC
ACCATCACCAGAACAGTTTGTCAGCCCTCTATTTTTGGTGCCAAAGAAAG
ACCAGGGGCAAAGGCCAGTGATAAACCTGAAAAACTTGAACAAATTTATT
CCATACGAACACTTCAAGATGGAGGGATTATTTTTAGTGAAGGAAATTCT
GAAGCAGGGGGACTGGATGTTAAAAATCGATCTCAAGGATGCATATTTCG
CCATACCTTTAGATCAGCATTCTCAGAGGTTTGTGAGATTCGAATGGGAC
AAGACCCTATACCAATTCCAGTGTCTCTGTTTCGGTTTATCTCCAGCTCC
AAgagtgttttcaaaaattctgaagGTTCCAATTTCACTTCTGAGGAGAT
TAGGGAttcgtttaatcatatttctgGACGATATCCTGCTAATAGCCTCG
ACTCCAGAGGAGTTGAGACAGATGAGGGACACAACTATTTTCCTTTTGCA
AAGTCTTGGGTTTCTAATAAATGTCAAGAAGTCAGTTTTCGAACCAACCC
AAAAGATAGAATTCTTGGGGATGATAATAGACTCAATCAAAATGACTCTA
AGCCTTCCAGAAGAGAAGGTGGTTGCCATAAAGAAGCAATGCTCAGAAAT
GTTAGAAAAGGAAAAGGTTCCCCTGAGGGAGTTATCGAAACTAGTGGGCA
GGTTGTCTGCCTCAATGCTAGCAATATTACCAGCACCCCTTCAATACAGG
AGCCTTCAACGACAACAGATTTCAGAGTTGAAG Run BLAST on NCBI protein sequence of TCONS_00040545-protein >TCONS_00040545-protein ID=TCONS_00040545-protein|Name=TCONS_00040545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MHCLILHHPSRYPRSPFTGALYQMQIKEEIGGVETEVPSVVGWPGVSHPS
TKEVSHPPSNLLEILPMGKFPNVLPAIKGLFPKEIPQTPLAGRTKFFLEN
WKKLTSDQILLEMVSGYRIPFLENPPPVLRQNPYVSQVSQDMRELIQEEV
KSMLLKGAIVTVTPSPEQFVSPLFLVPKKDQGQRPVINLKNLNKFIPYEH
FKMEGLFLVKEILKQGDWMLKIDLKDAYFAIPLDQHSQRFVRFEWDKTLY
QFQCLCFGLSPAPRVFSKILKVPISLLRRLGIRLIIFLDDILLIASTPEE
LRQMRDTTIFLLQSLGFLINVKKSVFEPTQKIEFLGMIIDSIKMTLSLPE
EKVVAIKKQCSEMLEKEKVPLRELSKLVGRLSASMLAILPAPLQYRSLQR
QQISELK Run BLAST on NCBI transcript from alignment at sc0002463:2616..7334+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040545 ID=TCONS_00040545|Name=TCONS_00040545|organism=Clytia hemisphaerica|type=transcript|length=4719bp|location=Sequence derived from alignment at sc0002463:2616..7334+ (Clytia hemisphaerica)
tcatttcataaaatCTCCGCCCAATCTAATATTGGTTACCGCCCTCACTC
GGATAGTAAATCTAGGACATCGTCCTAAACTACCCCACTTAGCTTTCAAC
TcgcaaaacaagatggcggaacAAGAGTAAGTGTaattaaaattctttga
attccCCAAATATCCAAGTAATCTGACACATATTGAAAGTGATAAAAGGC
TCAGCCATCACTGAGAGGATAATGGGTCATAACTAAGTTACTCATTTCAC
TTCGAGATACAGGAACTAGCTGGTATAGCCATAGATTCTTGTTTTGCTCG
TTGTTTTGTCAGATCAGAATAGAAAGAAACAATAGGTTAAGCCCCCAGGG
CTAACCGTTCCACAATACTTATTACCTNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAACAAGAGTAAGTGTaattaaaattct
ttgaattccCCAAATATCCAAGTAATCTGACACATATTGAAAGTGATAAA
AGGCTCAGCCATCACTGAGAGGATAATGGGTCATAACTAAGTTACTCATT
TCACTTCGAGATACAGGAACTAGCTGGTATAGCCATAGATTCTTGTTTTG
CTCGTTGTTTTGTCAGATCAGAATAGAAAGAAACAATAGGTTAAGCCCCC
AGGGCTAACCGTTCCACAATACTTATTACCTGTGGTAATATGTTTTCTCT
TTTATGTCACAGGATTGCCAACAAAGAGAAACAGGCAGCTGGCTCAAGTA
AGAGAAGTGCTGACGTCCTGGGAGAAGATGAACTTGAAGGGCCAAGAGCT
AAAGTGTCTTGTCTAGAACTTTTTGAAGAGGACAATGCAATAAACTTAAG
ATCAGATCTAGCGGATCAAATAAACAACTACATTCGCAGACATGTCTCGG
ACAAAATTCTAAAAGAGAAGATTTTGGAAGACTATCCGATTCCATCTAAC
ATAGACAAACCTCAGAAATTGGATATGTTTATGAAGGACACTTTAacctc
ttacaaagcatttgCTATGGCGAGAGATAGCCAATTGTATAACATTCAGT
CTGGTATACATAAGATTTTTGGACCACTGGCCAATCTTTGGGAATTGGCT
GAGGAGGACAAGAAAGACCTGCTTTCTAAGGAGGATGTCCCAGACGAGGT
GAAGGAAAAGATGGAGGAAATGTGCCGTTCCTTTACCAATGTTATTGCAC
TTGTCGGACAGGCGTCGAACAAAGTTGCATATTATAGACGTTTAAACATG
GTTGAAAATATGACAGGCGACTCTAAGAGAGCCAAGTAACTTCtaagtga
aaatgaagaagttttcaatgaaaaatcttGCAACCTTTTTGGTGAAAAGT
TTGAGGATCTCATTGACAAGTTAGccaaatccaaaaagaaatcaaaagat
gcATTGTCTAATCTTGCATCACCCAAGCCGGTATCCAAGAAGCCCTTTCA
CAGGAGCTCTCTATCAAATGCAGATCAAGGAGGAGATAGGGGGCGTGGAA
ACCGAGGTGCCTTCAGTGGTTGGTTGGCCAGGAGTCAGTCATCCTTCAAC
AAAAGAGGTAAGCCATCCTCCTTCAAATCTTCTGGAAATTCTACCAATGG
GGAAATTTCCAAATGTTCTCCCAGCAATAAAGGGGCTTTTTCCAAAGGAG
ATCCCTCAAACACCATTAGCAGGAAGGACAAAGTTCTTCCTGGAAAACTG
GAAGAAACTAACAAGCGATCAGATTTTATTAGAGATGGTGAGCGGGTACA
GAATCCCTTTTCTAGAAAACCCTCCCCCAGTTTTGAGACAAAACCCTTAC
GTTTCTCAAGTAAGTCAGGACATGAGGGAATTAATCCAGGAAGAGGTGAA
AAGTATGTTGCTCAAAGGGGCAATCGTGACAGTGACACCATCACCAGAAC
AGTTTGTCAGCCCTCTATTTTTGGTGCCAAAGAAAGACCAGGGGCAAAGG
CCAGTGATAAACCTGAAAAACTTGAACAAATTTATTCCATACGAACACTT
CAAGATGGAGGGATTATTTTTAGTGAAGGAAATTCTGAAGCAGGGGGACT
GGATGTTAAAAATCGATCTCAAGGATGCATATTTCGCCATACCTTTAGAT
CAGCATTCTCAGAGGTTTGTGAGATTCGAATGGGACAAGACCCTATACCA
ATTCCAGTGTCTCTGTTTCGGTTTATCTCCAGCTCCAAgagtgttttcaa
aaattctgaagGTTCCAATTTCACTTCTGAGGAGATTAGGGAttcgttta
atcatatttctgGACGATATCCTGCTAATAGCCTCGACTCCAGAGGAGTT
GAGACAGATGAGGGACACAACTATTTTCCTTTTGCAAAGTCTTGGGTTTC
TAATAAATGTCAAGAAGTCAGTTTTCGAACCAACCCAAAAGATAGAATTC
TTGGGGATGATAATAGACTCAATCAAAATGACTCTAAGCCTTCCAGAAGA
GAAGGTGGTTGCCATAAAGAAGCAATGCTCAGAAATGTTAGAAAAGGAAA
AGGTTCCCCTGAGGGAGTTATCGAAACTAGTGGGCAGGTTGTCTGCCTCA
ATGCTAGCAATATTACCAGCACCCCTTCAATACAGGAGCCTTCAACGACA
ACAGATTTCAGAGTTGAAG Coding sequence (CDS) from alignment at sc0002463:2616..7334+ >TCONS_00040545 ID=TCONS_00040545|Name=TCONS_00040545|organism=Clytia hemisphaerica|type=CDS|length=1221bp|location=Sequence derived from alignment at sc0002463:2616..7334+ (Clytia hemisphaerica)
atgcATTGTCTAATCTTGCATCACCCAAGCCGGTATCCAAGAAGCCCTTT
CACAGGAGCTCTCTATCAAATGCAGATCAAGGAGGAGATAGGGGGCGTGG
AAACCGAGGTGCCTTCAGTGGTTGGTTGGCCAGGAGTCAGTCATCCTTCA
ACAAAAGAGGTAAGCCATCCTCCTTCAAATCTTCTGGAAATTCTACCAAT
GGGGAAATTTCCAAATGTTCTCCCAGCAATAAAGGGGCTTTTTCCAAAGG
AGATCCCTCAAACACCATTAGCAGGAAGGACAAAGTTCTTCCTGGAAAAC
TGGAAGAAACTAACAAGCGATCAGATTTTATTAGAGATGGTGAGCGGGTA
CAGAATCCCTTTTCTAGAAAACCCTCCCCCAGTTTTGAGACAAAACCCTT
ACGTTTCTCAAGTAAGTCAGGACATGAGGGAATTAATCCAGGAAGAGGTG
AAAAGTATGTTGCTCAAAGGGGCAATCGTGACAGTGACACCATCACCAGA
ACAGTTTGTCAGCCCTCTATTTTTGGTGCCAAAGAAAGACCAGGGGCAAA
GGCCAGTGATAAACCTGAAAAACTTGAACAAATTTATTCCATACGAACAC
TTCAAGATGGAGGGATTATTTTTAGTGAAGGAAATTCTGAAGCAGGGGGA
CTGGATGTTAAAAATCGATCTCAAGGATGCATATTTCGCCATACCTTTAG
ATCAGCATTCTCAGAGGTTTGTGAGATTCGAATGGGACAAGACCCTATAC
CAATTCCAGTGTCTCTGTTTCGGTTTATCTCCAGCTCCAAgagtgttttc
aaaaattctgaagGTTCCAATTTCACTTCTGAGGAGATTAGGGAttcgtt
taatcatatttctgGACGATATCCTGCTAATAGCCTCGACTCCAGAGGAG
TTGAGACAGATGAGGGACACAACTATTTTCCTTTTGCAAAGTCTTGGGTT
TCTAATAAATGTCAAGAAGTCAGTTTTCGAACCAACCCAAAAGATAGAAT
TCTTGGGGATGATAATAGACTCAATCAAAATGACTCTAAGCCTTCCAGAA
GAGAAGGTGGTTGCCATAAAGAAGCAATGCTCAGAAATGTTAGAAAAGGA
AAAGGTTCCCCTGAGGGAGTTATCGAAACTAGTGGGCAGGTTGTCTGCCT
CAATGCTAGCAATATTACCAGCACCCCTTCAATACAGGAGCCTTCAACGA
CAACAGATTTCAGAGTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040545-exon-sc0002463-1491911889:2616..2741 | TCONS_00040545-exon-sc0002463-1491911889:2616..2741 | Clytia hemisphaerica | exon |
| TCONS_00040545-exon-sc0002463-1510915933:2616..2741 | TCONS_00040545-exon-sc0002463-1510915933:2616..2741 | Clytia hemisphaerica | exon |
| TCONS_00040545-exon-sc0002463-1575043694:2616..2741 | TCONS_00040545-exon-sc0002463-1575043694:2616..2741 | Clytia hemisphaerica | exon |
| TCONS_00040545-exon-sc0002463-1491911889:5428..7334 | TCONS_00040545-exon-sc0002463-1491911889:5428..7334 | Clytia hemisphaerica | exon |
| TCONS_00040545-exon-sc0002463-1510915933:5428..7334 | TCONS_00040545-exon-sc0002463-1510915933:5428..7334 | Clytia hemisphaerica | exon |
| TCONS_00040545-exon-sc0002463-1575043694:5428..7334 | TCONS_00040545-exon-sc0002463-1575043694:5428..7334 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002463 | supercontig | sc0002463:2616..7334 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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