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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040539 ID=TCONS_00040539|Name=TCONS_00040539|organism=Clytia hemisphaerica|type=transcript|length=4959bp
CAATAACATGCAGAAGCATTTCGAGCATATATGTGATTGGTTGGAAGGAG
AGAGTGAATGCGAACCCCATTTACTGAAAGAGGTATATGACAAAATGGTT
GAAATTGCCGGAGATTCTTCCCAATGCTACAGCTCGAAGCAACTCAAGAG
GAAGTTGAAAGAGCGTTATGGTGATCATCTGATTTTCATGGAGGAGCCAG
GGAGATCCAACATGCTGTGTTTCAAAAACTTTGCCTGGTTCATTATGGAT
agtttcaagaaaaacaaagtTCCTACTCCAAGCTCGATTCTCACTGCTGC
AGCAAAAATCATTAAATCAGAGTTGCGTCAGATGAAATGCGGAAAATCAC
ACTACCCAAATATTGAACAGATGGATGATATCAATTATATGAAACAATGG
GTTCCTGATGCACTACTTACATTATTGAAAGAGCTTATTCCTTCAGAACT
GAAGCAGGTCAGCATCGGCCAATGCATATCGCAGTCTGCAAAACCTAGAT
CGATGTTAGCACCAATACCATTTGGAGTTGGAGTTGATGTTGATAAGTCA
TTCGAGTGCAAATGGTTCATAAATCATCTCGCTAAACTTGGCTTTTCCGT
ATCTTATGATGAGGTGACCAACTTTAAGAAGTCTGCAGCGGCAGTAGCCT
GCGGTTCTGNATAAATCATCTCGCTAAACTTGGCTTTTCCGTATCTTATG
ATGAGGTGACCAACTTTAAGAAGTCTGCAGCGGCAGTAGCCTGCGGTTCT
GGTTCTGCTGAGGTCGGTGTTGCTGTTGGTGATTCTGCTGAGGTCGGTGT
TGCTGTTGGTGATACTTCTGAGGTCGGTGTTGCTGTTGGTGATTCTTCTG
AGGTCGGTGTTGCTGTTGGTGATTCTTCTGAGGTCGGTGTTGCTGTTGGT
GATTCTTCTGAGGTCGGTGTTGCTGTTGGTGATTCTTCTGAGGTCGGTGT
TGCTGTTGGTGATTCTTCTGAGGTCGGTGTTGCTGTTGGTGATTCTTCTG
AGGTCGGTTTTGCTGTTGGTGATTCTTCTGAGGTCGGTGTTGCTGTTGGT
AATTCTGCTGAGGTCGGTGTTGCTGTTGGTGATTCCGCTGAGGTCGGTGT
TGCTGTTGGTGATTCTTCTGAAGTCGGTGTTGCTGTTGGTGATTCCGCTG
AAGTCGGTGTTGCTGTTGGTGATTCTTCTGAGGTCGGTGTTGGTGTTGGT
GTTGGTGATTCTTCTGAGGTCGGTGTTGGTGTTGGTGTTGGTGATTCTGC
TGAGGTCGGTGTCGCTGCTGGGGATTCTGACCAACATGGCGAGTTTGTGT
CACTATTTGAGCAATGGGTAGCTGACAATGTTGATCATAACATCCGAACC
TTGACTGGAAAAGGAACTTTCCATGGTATGGGTATCGTTTCAATAGCATC
TCGTGAAACCAAGAAGTACAAAGCAATCAAGCGCCTGAAGAAAAATGAGA
GCAAGCCTCAAACAAATGGTGTTTCAATCATACCTTTCTACGGTTCACAC
GAGCGTGGTTTATCGAAATTGAAATTTACCAAAATCAAAGATCTGTCAGA
GAAATTTCAAAGCGAACTCACACATCATCATCAAGAAAAGACCATCGATC
TGATTTGGCAAATGGCATGGCATTTTTCAACACGAGAGTCCCCGCGACCA
AATTGGCAAGGCTTTATGCAAACTGCTGCAGTACCTCAAAATAGCGACGA
TCCGTTTTCAAAAGCATCAGTAAAATTCCTGCCGATTATCGATCTAAGCT
CTTCGGATGAAACTTGTCTTTATTCGACACTCCTATTTGTCAAAGATGAa
gcaaaaaagcaaaagattgaGGTACCTTGTGTAACATTTGATCAACCTTT
GTGGCAGAAGGCAATTGGAATAGTGGAAGAAAAAAACCTTGATATAGTCT
GTCGGCTCGGTGGGTTTCATACACTGATGAGCTTTCTGGGTAGTGTTGGA
AAGGTGATGATGGGCTCTGGGCTTGAAGAGTTGTTTGAAGAAGTGTATTC
GGAAGATACCGTGAAGCACATGATCTCGGGAAAGGCTTATGCTAGAGCTT
TGAGGGCCCATTTGATGACACAGAGTGCATTGGTTGAACACCTAGTTGAG
ATCATGGAAGATGAAGGAAAATTACAACCAACAGATAAGTTCCAGTCATG
CTACTCCAAACTTTTAAAAGGAGCCCTATCAAATGAAGATCTTGAAGAAT
TTCAGAATGGAGAGCACGCACAATCATTCAATAAAGAAATGCAGAAATTA
ACAAGCCGTTTAAGAGAAGATTCGCGGACAGCAAAGCTATGGATCCAATA
CATCGACTACGTCAACATAATAAAGGATTTCATCATCGCTGAAAGAACCT
CTGATTGGCAGCTCCACCTAACAACGTTATCAAAGATGCTCAATCTTTTA
GCAGCGACGGGCCATGTACACTACGCCAGGAGTGCTAGAATGTACATACA
GCAAATGTCAGAACTGTCGTCGAAATATCCATACCTGTTTAACAAGTTTT
CGAGTGGTCATCATGCCGTGAGGAGATCAAATCGATACTGGGCTGGTCTT
TGGTCCGATCTTGTCATTGAGCAGACACTTATGAGGTCAATAAAAAGCCG
TGGTGGATTGACAAGAGGTAGGGGAATGGAAGAGAATGTTCGTCAACTTT
GGGTTTCAAGCATGAGCTATTGTGNGTCAAAGATGAagcaaaaaagcaaa
agattgaGGTACCTTGTGTAACATTTGATCAACCTTTGTGGCAGAAGGCA
ATTGGAATAGTGGAAGAAAAAAACCTTGATATAGTCTGTCGGCTCGGTGG
GTTTCATACACTGATGAGCTTTCTGGGTAGTGTTGGAAAGGTGATGATGG
GCTCTGGGCTTGAAGAGTTGTTTGAGGAAGTGTATTCGGAAGATACCGTG
AAGCACATGATCTCGGGAAAGGCTTATGCTAGAGCTCTGAGGGCCCATTT
GATGACGCAGAGTGCATTGGTTGAACACCTAGTTGAGATCATGGAAGATG
AAGGAAAATTACAACCAACAGATAAGTTCCAGTCATGCTACTCCAAACTT
TTAAAAGGAGCCCTATCAAATGAAGATCTTGAAGGATTTCAGAATGGAGA
GCACGCACAATCATTCAATAAAGAAATGCAGAAATTAACAAGCCGTTTAA
GAGAAGATTCGCGAACGGCAAAGCTATGGATCCAATACATCGACTACGTC
AACATAATAAAGGATTTCATCATCGCTGAAAGAACCTCTGATTGGCAGCT
CCACCTAACAACGTTATCAAAGATGCTCAATCTTTTAGCAGCGACGGGCC
ATATACACTACGCCAGGAGTGCTAGAATGTACATACAGCAAATGTCAGAA
CTGTCGTCGAAATATCCATACCTGTTTAACAAGTTTTCGAGTGGTCATCA
TGCCGTGAGGAGATCAAATCGATACTGGGCTGGTCTTTGGTCCGATCTTG
TCATTGAGCAGACACTTATGAGGTCAATAAAAAGCCGTGGTGGATTGACA
AGAGGTAGGGGAATGGAAGAGAATGTTCGTCAACTTTGGGTTTCAAGCAT
GAGCTATTGTGCAGCAGTTCACGATGCCATGACAAGCTTGACTGGAGTGA
AGGCTCAAAGCAGTGATCAACACCAAGAGATGGGGTTTTCACGCATCAAA
ACTGACTTCAAAGATTCTCTCAAGTTCTTTTGTTGGTTGGAAAAACGGAA
CCCTTTTGTTTACGAGGATGCCCACTTACATTCCTTATCCTCTGGCGTAA
TTGCAGTTATCGGTCAAGACAACGTCAACTGTGATGAAGCTGAGGTGGTT
GGAGGGAGGATTCAAAGCTCATTAGATGGGAAATCATTCACTGACGCTTC
AATTAAACGAAAGGACGAAGTGAAGTCTCTCGCTGCCATTGTGAATTCAG
TAAACGTAGATGATGAAGCAATTGCTGTAGACTCCACAAGTCTTTTCACA
AGACTAGCGGCAGTGGCGCAACGAGAAGAAGATGTCGAGAAATACTTTGA
ATATGAGTTGACACAATTCCCTGAAGCCCTATTCAACCGTGGTTTGATGA
GAAAACCAGATAAAGCTTCATTAAGGAACACCATCCTCACAGAAGAAAAG
ACTTGTCATCCAGATGGGAAGTATGTTATCGATGGTGGTGCCTTGATACA
TCGAGTGAGTTGGAAAAAAGGAATGACTTTCAAAGAAATCGCACGAAACC
ATGTGTCATATGTCAGGAGCAATTATGGAAGCTGTTTCATTGTCTTTGAT
GGCTACAACAATCCAACGTCGATTAAAGCAAATGAGCATCAACGCCGCCA
GAAGACTCATGGCTCTTGTCCTGATATTGAGATTTTTCCTGACAACGAAT
CAAAATATAACCGAGAGCGTTTTCTTTCCAATTGGAAGAACAAACAGCAG
CTTATTGCACTCATCACAGATTCTCTTCGCTTGAATGGTCAGAATGTTTA
TGTATGCGAAGGAGATGCGGATACTAAAATTGTCTCGACAGCTTTGGAAG
TATCAAAAGGTGAGCCAACAATAGTGGTTGCTGACGATACCGATGTTGCT
GTTATGATGGCATATCATTGGACAAAAGACCTCAAACCGTTATTGTTTCT
CTCAGAACGGACAAAGAAATGCTGGGACATTGGTGCATGTCAAACGGAAT
TAGGTGTAAATAAGGAGCACCTTTTATTCATTCATGCATGGACGGGCTGT
GATTCTACTTCCGCTATCTGTGGCAAAGGAAAAGTTAGTTTTTTCAACCT
CATCAAGAAATCGGAAGTCCTACGCGAGGTTTCCGAAATCTTTTCTGACT
TTTGGACCAGTAAAGAACAAATTTATGAGGCATCAATCAACGCATTCTTG
GAGCTCTATGGTGGAAAACCTGGCATGTCACTTTCATCTTTGAGGTAACC
TGccttaaaattgtaaaattgctaTGATGGTTTATCATTTGATACTTTGT
TATCAATGT Run BLAST on NCBI transcript from alignment at sc0002460:170..5128- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040539 ID=TCONS_00040539|Name=TCONS_00040539|organism=Clytia hemisphaerica|type=transcript|length=4959bp|location=Sequence derived from alignment at sc0002460:170..5128- (Clytia hemisphaerica)
CAATAACATGCAGAAGCATTTCGAGCATATATGTGATTGGTTGGAAGGAG
AGAGTGAATGCGAACCCCATTTACTGAAAGAGGTATATGACAAAATGGTT
GAAATTGCCGGAGATTCTTCCCAATGCTACAGCTCGAAGCAACTCAAGAG
GAAGTTGAAAGAGCGTTATGGTGATCATCTGATTTTCATGGAGGAGCCAG
GGAGATCCAACATGCTGTGTTTCAAAAACTTTGCCTGGTTCATTATGGAT
AGTTTCAAGAAAAACAAAGTTCCTACTCCAAGCTCGATTCTCACTGCTGC
AGCAAAAATCATTAAATCAGAGTTGCGTCAGATGAAATGCGGAAAATCAC
ACTACCCAAATATTGAACAGATGGATGATATCAATTATATGAAACAATGG
GTTCCTGATGCACTACTTACATTATTGAAAGAGCTTATTCCTTCAGAACT
GAAGCAGGTCAGCATCGGCCAATGCATATCGCAGTCTGCAAAACCTAGAT
CGATGTTAGCACCAATACCATTTGGAGTTGGAGTTGATGTTGATAAGTCA
TTCGAGTGCAAATGGTTCATAAATCATCTCGCTAAACTTGGCTTTTCCGT
ATCTTATGATGAGGTGACCAACTTTAAGAAGTCTGCAGCGGCAGTAGCCT
GCGGTTCTGNATAAATCATCTCGCTAAACTTGGCTTTTCCGTATCTTATG
ATGAGGTGACCAACTTTAAGAAGTCTGCAGCGGCAGTAGCCTGCGGTTCT
GGTTCTGCTGAGGTCGGTGTTGCTGTTGGTGATTCTGCTGAGGTCGGTGT
TGCTGTTGGTGATACTTCTGAGGTCGGTGTTGCTGTTGGTGATTCTTCTG
AGGTCGGTGTTGCTGTTGGTGATTCTTCTGAGGTCGGTGTTGCTGTTGGT
GATTCTTCTGAGGTCGGTGTTGCTGTTGGTGATTCTTCTGAGGTCGGTGT
TGCTGTTGGTGATTCTTCTGAGGTCGGTGTTGCTGTTGGTGATTCTTCTG
AGGTCGGTTTTGCTGTTGGTGATTCTTCTGAGGTCGGTGTTGCTGTTGGT
AATTCTGCTGAGGTCGGTGTTGCTGTTGGTGATTCCGCTGAGGTCGGTGT
TGCTGTTGGTGATTCTTCTGAAGTCGGTGTTGCTGTTGGTGATTCCGCTG
AAGTCGGTGTTGCTGTTGGTGATTCTTCTGAGGTCGGTGTTGGTGTTGGT
GTTGGTGATTCTTCTGAGGTCGGTGTTGGTGTTGGTGTTGGTGATTCTGC
TGAGGTCGGTGTCGCTGCTGGGGATTCTGACCAACATGGCGAGTTTGTGT
CACTATTTGAGCAATGGGTAGCTGACAATGTTGATCATAACATCCGAACC
TTGACTGGAAAAGGAACTTTCCATGGTATGGGTATCGTTTCAATAGCATC
TCGTGAAACCAAGAAGTACAAAGCAATCAAGCGCCTGAAGAAAAATGAGA
GCAAGCCTCAAACAAATGGTGTTTCAATCATACCTTTCTACGGTTCACAC
GAGCGTGGTTTATCGAAATTGAAATTTACCAAAATCAAAGATCTGTCAGA
GAAATTTCAAAGCGAACTCACACATCATCATCAAGAAAAGACCATCGATC
TGATTTGGCAAATGGCATGGCATTTTTCAACACGAGAGTCCCCGCGACCA
AATTGGCAAGGCTTTATGCAAACTGCTGCAGTACCTCAAAATAGCGACGA
TCCGTTTTCAAAAGCATCAGTAAAATTCCTGCCGATTATCGATCTAAGCT
CTTCGGATGAAACTTGTCTTTATTCGACACTCCTATTTGTCAAAGATGAA
GCAAAAAAGCAAAAGATTGAGGTACCTTGTGTAACATTTGATCAACCTTT
GTGGCAGAAGGCAATTGGAATAGTGGAAGAAAAAAACCTTGATATAGTCT
GTCGGCTCGGTGGGTTTCATACACTGATGAGCTTTCTGGGTAGTGTTGGA
AAGGTGATGATGGGCTCTGGGCTTGAAGAGTTGTTTGAAGAAGTGTATTC
GGAAGATACCGTGAAGCACATGATCTCGGGAAAGGCTTATGCTAGAGCTT
TGAGGGCCCATTTGATGACACAGAGTGCATTGGTTGAACACCTAGTTGAG
ATCATGGAAGATGAAGGAAAATTACAACCAACAGATAAGTTCCAGTCATG
CTACTCCAAACTTTTAAAAGGAGCCCTATCAAATGAAGATCTTGAAGAAT
TTCAGAATGGAGAGCACGCACAATCATTCAATAAAGAAATGCAGAAATTA
ACAAGCCGTTTAAGAGAAGATTCGCGGACAGCAAAGCTATGGATCCAATA
CATCGACTACGTCAACATAATAAAGGATTTCATCATCGCTGAAAGAACCT
CTGATTGGCAGCTCCACCTAACAACGTTATCAAAGATGCTCAATCTTTTA
GCAGCGACGGGCCATGTACACTACGCCAGGAGTGCTAGAATGTACATACA
GCAAATGTCAGAACTGTCGTCGAAATATCCATACCTGTTTAACAAGTTTT
CGAGTGGTCATCATGCCGTGAGGAGATCAAATCGATACTGGGCTGGTCTT
TGGTCCGATCTTGTCATTGAGCAGACACTTATGAGGTCAATAAAAAGCCG
TGGTGGATTGACAAGAGGTAGGGGAATGGAAGAGAATGTTCGTCAACTTT
GGGTTTCAAGCATGAGCTATTGTGNGTCAAAGATGAAGCAAAAAAGCAAA
AGATTGAGGTACCTTGTGTAACATTTGATCAACCTTTGTGGCAGAAGGCA
ATTGGAATAGTGGAAGAAAAAAACCTTGATATAGTCTGTCGGCTCGGTGG
GTTTCATACACTGATGAGCTTTCTGGGTAGTGTTGGAAAGGTGATGATGG
GCTCTGGGCTTGAAGAGTTGTTTGAGGAAGTGTATTCGGAAGATACCGTG
AAGCACATGATCTCGGGAAAGGCTTATGCTAGAGCTCTGAGGGCCCATTT
GATGACGCAGAGTGCATTGGTTGAACACCTAGTTGAGATCATGGAAGATG
AAGGAAAATTACAACCAACAGATAAGTTCCAGTCATGCTACTCCAAACTT
TTAAAAGGAGCCCTATCAAATGAAGATCTTGAAGGATTTCAGAATGGAGA
GCACGCACAATCATTCAATAAAGAAATGCAGAAATTAACAAGCCGTTTAA
GAGAAGATTCGCGAACGGCAAAGCTATGGATCCAATACATCGACTACGTC
AACATAATAAAGGATTTCATCATCGCTGAAAGAACCTCTGATTGGCAGCT
CCACCTAACAACGTTATCAAAGATGCTCAATCTTTTAGCAGCGACGGGCC
ATATACACTACGCCAGGAGTGCTAGAATGTACATACAGCAAATGTCAGAA
CTGTCGTCGAAATATCCATACCTGTTTAACAAGTTTTCGAGTGGTCATCA
TGCCGTGAGGAGATCAAATCGATACTGGGCTGGTCTTTGGTCCGATCTTG
TCATTGAGCAGACACTTATGAGGTCAATAAAAAGCCGTGGTGGATTGACA
AGAGGTAGGGGAATGGAAGAGAATGTTCGTCAACTTTGGGTTTCAAGCAT
GAGCTATTGTGCAGCAGTTCACGATGCCATGACAAGCTTGACTGGAGTGA
AGGCTCAAAGCAGTGATCAACACCAAGAGATGGGGTTTTCACGCATCAAA
ACTGACTTCAAAGATTCTCTCAAGTTCTTTTGTTGGTTGGAAAAACGGAA
CCCTTTTGTTTACGAGGATGCCCACTTACATTCCTTATCCTCTGGCGTAA
TTGCAGTTATCGGTCAAGACAACGTCAACTGTGATGAAGCTGAGGTGGTT
GGAGGGAGGATTCAAAGCTCATTAGATGGGAAATCATTCACTGACGCTTC
AATTAAACGAAAGGACGAAGTGAAGTCTCTCGCTGCCATTGTGAATTCAG
TAAACGTAGATGATGAAGCAATTGCTGTAGACTCCACAAGTCTTTTCACA
AGACTAGCGGCAGTGGCGCAACGAGAAGAAGATGTCGAGAAATACTTTGA
ATATGAGTTGACACAATTCCCTGAAGCCCTATTCAACCGTGGTTTGATGA
GAAAACCAGATAAAGCTTCATTAAGGAACACCATCCTCACAGAAGAAAAG
ACTTGTCATCCAGATGGGAAGTATGTTATCGATGGTGGTGCCTTGATACA
TCGAGTGAGTTGGAAAAAAGGAATGACTTTCAAAGAAATCGCACGAAACC
ATGTGTCATATGTCAGGAGCAATTATGGAAGCTGTTTCATTGTCTTTGAT
GGCTACAACAATCCAACGTCGATTAAAGCAAATGAGCATCAACGCCGCCA
GAAGACTCATGGCTCTTGTCCTGATATTGAGATTTTTCCTGACAACGAAT
CAAAATATAACCGAGAGCGTTTTCTTTCCAATTGGAAGAACAAACAGCAG
CTTATTGCACTCATCACAGATTCTCTTCGCTTGAATGGTCAGAATGTTTA
TGTATGCGAAGGAGATGCGGATACTAAAATTGTCTCGACAGCTTTGGAAG
TATCAAAAGGTGAGCCAACAATAGTGGTTGCTGACGATACCGATGTTGCT
GTTATGATGGCATATCATTGGACAAAAGACCTCAAACCGTTATTGTTTCT
CTCAGAACGGACAAAGAAATGCTGGGACATTGGTGCATGTCAAACGGAAT
TAGGTGTAAATAAGGAGCACCTTTTATTCATTCATGCATGGACGGGCTGT
GATTCTACTTCCGCTATCTGTGGCAAAGGAAAAGTTAGTTTTTTCAACCT
CATCAAGAAATCGGAAGTCCTACGCGAGGTTTCCGAAATCTTTTCTGACT
TTTGGACCAGTAAAGAACAAATTTATGAGGCATCAATCAACGCATTCTTG
GAGCTCTATGGTGGAAAACCTGGCATGTCACTTTCATCTTTGAGGTAACC
TGCCTTAAAATTGTAAAATTGCTATGATGGTTTATCATTTGATACTTTGT
TATCAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040539-exon-sc0002460-1575043694:170..5128 | TCONS_00040539-exon-sc0002460-1575043694:170..5128 | Clytia hemisphaerica | exon |
| TCONS_00040539-exon-sc0002460-1510915933:170..5128 | TCONS_00040539-exon-sc0002460-1510915933:170..5128 | Clytia hemisphaerica | exon |
| TCONS_00040539-exon-sc0002460-1491911889:170..5128 | TCONS_00040539-exon-sc0002460-1491911889:170..5128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002460 | supercontig | sc0002460:170..5128 - |
Blast
The following BLAST results are available for this feature:
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