TCONS_00040538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040538
Unique NameTCONS_00040538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4689

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040538 ID=TCONS_00040538|Name=TCONS_00040538|organism=Clytia hemisphaerica|type=transcript|length=4689bp
CAATAACATGCAGAAGCATTTCGAGCATATATGTGATTGGTTGGAAGGAG
AGAGTGAATGCGAACCCCATTTACTGAAAGAGGTATATGACAAAATGGTT
GAAATTGCCGGAGATTCTTCCCAATGCTACAGCTCGAAGCAACTCAAGAG
GAAGTTGAAAGAGCGTTATGGTGATCATCTGATTTTCATGGAGGAGCCAG
GGAGATCCAACATGCTGTGTTTCAAAAACTTTGCCTGGTTCATTATGGAT
agtttcaagaaaaacaaagtTCCTACTCCAAGCTCGATTCTCACTGCTGC
AGCAAAAATCATTAAATCAGAGTTGCGTCAGATGAAATGCGGAAAATCAC
ACTACCCAAATATTGAACAGATGGATGATATCAATTATATGAAACAATGG
GTTCCTGATGCACTACTTACATTATTGAAAGAGCTTATTCCTTCAGAACT
GAAGCAGGTCAGCATCGGCCAATGCATATCGCAGTCTGCAAAACCTAGAT
CGATGTTAGCACCAATACCATTTGGAGTTGGAGTTGATGTTGATAAGTCA
TTCGAGTGCAAATGGTTCATAAATCATCTCGCTAAACTTGGCTTTTCCGT
ATCTTATGATGAGGTGACCAACTTTAAGAAGTCTGCAGCGGCAGTAGCCT
GCGGTTCTGNATAAATCATCTCGCTAAACTTGGCTTTTCCGTATCTTATG
ATGAGGTGACCAACTTTAAGAAGTCTGCAGCGGCAGTAGCCTGCGGTTCT
GGTTCTGCTGAGGTCGGTGTTGCTGTTGGTGATTCTGCTGAGGTCGGTGT
TGCTGTTGGTGATTCCGCTGAGGTCGGTGTTGCTGTTGGTGATTCTTCTG
AAGTCGGTGTTGCTGTTGGTGATTCCGCTGAAGTCGGTGTTGCTGTTGGT
GATTCTTCTGAGGTCGGTGTTGGTGTTGGTGTTGGTGATTCTTCTGAGGT
CGGTGTTGGTGTTGGTGTTGGTGATTCTGCTGAGGTCGGTGTCGCTGCTG
GGGATTCTGACCAACATGGCGAGTTTGTGTCACTATTTGAGCAATGGGTA
GCTGACAATGTTGATCATAACATCCGAACCTTGACTGGAAAAGGAACTTT
CCATGGTATGGGTATCGTTTCAATAGCATCTCGTGAAACCAAGAAGTACA
AAGCAATCAAGCGCCTGAAGAAAAATGAGAGCAAGCCTCAAACAAATGGT
GTTTCAATCATACCTTTCTACGGTTCACACGAGCGTGGTTTATCGAAATT
GAAATTTACCAAAATCAAAGATCTGTCAGAGAAATTTCAAAGCGAACTCA
CACATCATCATCAAGAAAAGACCATCGATCTGATTTGGCAAATGGCATGG
CATTTTTCAACACGAGAGTCCCCGCGACCAAATTGGCAAGGCTTTATGCA
AACTGCTGCAGTACCTCAAAATAGCGACGATCCGTTTTCAAAAGCATCAG
TAAAATTCCTGCCGATTATCGATCTAAGCTCTTCGGATGAAACTTGTCTT
TATTCGACACTCCTATTTGTCAAAGATGAagcaaaaaagcaaaagattga
GGTACCTTGTGTAACATTTGATCAACCTTTGTGGCAGAAGGCAATTGGAA
TAGTGGAAGAAAAAAACCTTGATATAGTCTGTCGGCTCGGTGGGTTTCAT
ACACTGATGAGCTTTCTGGGTAGTGTTGGAAAGGTGATGATGGGCTCTGG
GCTTGAAGAGTTGTTTGAAGAAGTGTATTCGGAAGATACCGTGAAGCACA
TGATCTCGGGAAAGGCTTATGCTAGAGCTTTGAGGGCCCATTTGATGACA
CAGAGTGCATTGGTTGAACACCTAGTTGAGATCATGGAAGATGAAGGAAA
ATTACAACCAACAGATAAGTTCCAGTCATGCTACTCCAAACTTTTAAAAG
GAGCCCTATCAAATGAAGATCTTGAAGAATTTCAGAATGGAGAGCACGCA
CAATCATTCAATAAAGAAATGCAGAAATTAACAAGCCGTTTAAGAGAAGA
TTCGCGGACAGCAAAGCTATGGATCCAATACATCGACTACGTCAACATAA
TAAAGGATTTCATCATCGCTGAAAGAACCTCTGATTGGCAGCTCCACCTA
ACAACGTTATCAAAGATGCTCAATCTTTTAGCAGCGACGGGCCATGTACA
CTACGCCAGGAGTGCTAGAATGTACATACAGCAAATGTCAGAACTGTCGT
CGAAATATCCATACCTGTTTAACAAGTTTTCGAGTGGTCATCATGCCGTG
AGGAGATCAAATCGATACTGGGCTGGTCTTTGGTCCGATCTTGTCATTGA
GCAGACACTTATGAGGTCAATAAAAAGCCGTGGTGGATTGACAAGAGGTA
GGGGAATGGAAGAGAATGTTCGTCAACTTTGGGTTTCAAGCATGAGCTAT
TGTGNGTCAAAGATGAagcaaaaaagcaaaagattgaGGTACCTTGTGTA
ACATTTGATCAACCTTTGTGGCAGAAGGCAATTGGAATAGTGGAAGAAAA
AAACCTTGATATAGTCTGTCGGCTCGGTGGGTTTCATACACTGATGAGCT
TTCTGGGTAGTGTTGGAAAGGTGATGATGGGCTCTGGGCTTGAAGAGTTG
TTTGAGGAAGTGTATTCGGAAGATACCGTGAAGCACATGATCTCGGGAAA
GGCTTATGCTAGAGCTCTGAGGGCCCATTTGATGACGCAGAGTGCATTGG
TTGAACACCTAGTTGAGATCATGGAAGATGAAGGAAAATTACAACCAACA
GATAAGTTCCAGTCATGCTACTCCAAACTTTTAAAAGGAGCCCTATCAAA
TGAAGATCTTGAAGGATTTCAGAATGGAGAGCACGCACAATCATTCAATA
AAGAAATGCAGAAATTAACAAGCCGTTTAAGAGAAGATTCGCGAACGGCA
AAGCTATGGATCCAATACATCGACTACGTCAACATAATAAAGGATTTCAT
CATCGCTGAAAGAACCTCTGATTGGCAGCTCCACCTAACAACGTTATCAA
AGATGCTCAATCTTTTAGCAGCGACGGGCCATATACACTACGCCAGGAGT
GCTAGAATGTACATACAGCAAATGTCAGAACTGTCGTCGAAATATCCATA
CCTGTTTAACAAGTTTTCGAGTGGTCATCATGCCGTGAGGAGATCAAATC
GATACTGGGCTGGTCTTTGGTCCGATCTTGTCATTGAGCAGACACTTATG
AGGTCAATAAAAAGCCGTGGTGGATTGACAAGAGGTAGGGGAATGGAAGA
GAATGTTCGTCAACTTTGGGTTTCAAGCATGAGCTATTGTGCAGCAGTTC
ACGATGCCATGACAAGCTTGACTGGAGTGAAGGCTCAAAGCAGTGATCAA
CACCAAGAGATGGGGTTTTCACGCATCAAAACTGACTTCAAAGATTCTCT
CAAGTTCTTTTGTTGGTTGGAAAAACGGAACCCTTTTGTTTACGAGGATG
CCCACTTACATTCCTTATCCTCTGGCGTAATTGCAGTTATCGGTCAAGAC
AACGTCAACTGTGATGAAGCTGAGGTGGTTGGAGGGAGGATTCAAAGCTC
ATTAGATGGGAAATCATTCACTGACGCTTCAATTAAACGAAAGGACGAAG
TGAAGTCTCTCGCTGCCATTGTGAATTCAGTAAACGTAGATGATGAAGCA
ATTGCTGTAGACTCCACAAGTCTTTTCACAAGACTAGCGGCAGTGGCGCA
ACGAGAAGAAGATGTCGAGAAATACTTTGAATATGAGTTGACACAATTCC
CTGAAGCCCTATTCAACCGTGGTTTGATGAGAAAACCAGATAAAGCTTCA
TTAAGGAACACCATCCTCACAGAAGAAAAGACTTGTCATCCAGATGGGAA
GTATGTTATCGATGGTGGTGCCTTGATACATCGAGTGAGTTGGAAAAAAG
GAATGACTTTCAAAGAAATCGCACGAAACCATGTGTCATATGTCAGGAGC
AATTATGGAAGCTGTTTCATTGTCTTTGATGGCTACAACAATCCAACGTC
GATTAAAGCAAATGAGCATCAACGCCGCCAGAAGACTCATGGCTCTTGTC
CTGATATTGAGATTTTTCCTGACAACGAATCAAAATATAACCGAGAGCGT
TTTCTTTCCAATTGGAAGAACAAACAGCAGCTTATTGCACTCATCACAGA
TTCTCTTCGCTTGAATGGTCAGAATGTTTATGTATGCGAAGGAGATGCGG
ATACTAAAATTGTCTCGACAGCTTTGGAAGTATCAAAAGGTGAGCCAACA
ATAGTGGTTGCTGACGATACCGATGTTGCTGTTATGATGGCATATCATTG
GACAAAAGACCTCAAACCGTTATTGTTTCTCTCAGAACGGACAAAGAAAT
GCTGGGACATTGGTGCATGTCAAACGGAATTAGGTGTAAATAAGGAGCAC
CTTTTATTCATTCATGCATGGACGGGCTGTGATTCTACTTCCGCTATCTG
TGGCAAAGGAAAAGTTAGTTTTTTCAACCTCATCAAGAAATCGGAAGTCC
TACGCGAGGTTTCCGAAATCTTTTCTGACTTTTGGACCAGTAAAGAACAA
ATTTATGAGGCATCAATCAACGCATTCTTGGAGCTCTATGGTGGAAAACC
TGGCATGTCACTTTCATCTTTGAGGTAACCTGccttaaaattgtaaaatt
gctaTGATGGTTTATCATTTGATACTTTGTTATCAATGT
Run BLAST on NCBI

protein sequence of TCONS_00040538-protein

>TCONS_00040538-protein ID=TCONS_00040538-protein|Name=TCONS_00040538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=694bp
MSFLGSVGKVMMGSGLEELFEEVYSEDTVKHMISGKAYARALRAHLMTQS
ALVEHLVEIMEDEGKLQPTDKFQSCYSKLLKGALSNEDLEGFQNGEHAQS
FNKEMQKLTSRLREDSRTAKLWIQYIDYVNIIKDFIIAERTSDWQLHLTT
LSKMLNLLAATGHIHYARSARMYIQQMSELSSKYPYLFNKFSSGHHAVRR
SNRYWAGLWSDLVIEQTLMRSIKSRGGLTRGRGMEENVRQLWVSSMSYCA
AVHDAMTSLTGVKAQSSDQHQEMGFSRIKTDFKDSLKFFCWLEKRNPFVY
EDAHLHSLSSGVIAVIGQDNVNCDEAEVVGGRIQSSLDGKSFTDASIKRK
DEVKSLAAIVNSVNVDDEAIAVDSTSLFTRLAAVAQREEDVEKYFEYELT
QFPEALFNRGLMRKPDKASLRNTILTEEKTCHPDGKYVIDGGALIHRVSW
KKGMTFKEIARNHVSYVRSNYGSCFIVFDGYNNPTSIKANEHQRRQKTHG
SCPDIEIFPDNESKYNRERFLSNWKNKQQLIALITDSLRLNGQNVYVCEG
DADTKIVSTALEVSKGEPTIVVADDTDVAVMMAYHWTKDLKPLLFLSERT
KKCWDIGACQTELGVNKEHLLFIHAWTGCDSTSAICGKGKVSFFNLIKKS
EVLREVSEIFSDFWTSKEQIYEASINAFLELYGGKPGMSLSSLR
Run BLAST on NCBI

transcript from alignment at sc0002460:170..5128-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040538 ID=TCONS_00040538|Name=TCONS_00040538|organism=Clytia hemisphaerica|type=transcript|length=4959bp|location=Sequence derived from alignment at sc0002460:170..5128- (Clytia hemisphaerica)
CAATAACATGCAGAAGCATTTCGAGCATATATGTGATTGGTTGGAAGGAG AGAGTGAATGCGAACCCCATTTACTGAAAGAGGTATATGACAAAATGGTT GAAATTGCCGGAGATTCTTCCCAATGCTACAGCTCGAAGCAACTCAAGAG GAAGTTGAAAGAGCGTTATGGTGATCATCTGATTTTCATGGAGGAGCCAG GGAGATCCAACATGCTGTGTTTCAAAAACTTTGCCTGGTTCATTATGGAT AGTTTCAAGAAAAACAAAGTTCCTACTCCAAGCTCGATTCTCACTGCTGC AGCAAAAATCATTAAATCAGAGTTGCGTCAGATGAAATGCGGAAAATCAC ACTACCCAAATATTGAACAGATGGATGATATCAATTATATGAAACAATGG GTTCCTGATGCACTACTTACATTATTGAAAGAGCTTATTCCTTCAGAACT GAAGCAGGTCAGCATCGGCCAATGCATATCGCAGTCTGCAAAACCTAGAT CGATGTTAGCACCAATACCATTTGGAGTTGGAGTTGATGTTGATAAGTCA TTCGAGTGCAAATGGTTCATAAATCATCTCGCTAAACTTGGCTTTTCCGT ATCTTATGATGAGGTGACCAACTTTAAGAAGTCTGCAGCGGCAGTAGCCT GCGGTTCTGNATAAATCATCTCGCTAAACTTGGCTTTTCCGTATCTTATG ATGAGGTGACCAACTTTAAGAAGTCTGCAGCGGCAGTAGCCTGCGGTTCT GGTTCTGCTGAGGTCGGTGTTGCTGTTGGTGATTCTGCTGAGGTCGGTGT TGCTGTTGGTGATACTTCTGAGGTCGGTGTTGCTGTTGGTGATTCTTCTG AGGTCGGTGTTGCTGTTGGTGATTCTTCTGAGGTCGGTGTTGCTGTTGGT GATTCTTCTGAGGTCGGTGTTGCTGTTGGTGATTCTTCTGAGGTCGGTGT TGCTGTTGGTGATTCTTCTGAGGTCGGTGTTGCTGTTGGTGATTCTTCTG AGGTCGGTTTTGCTGTTGGTGATTCTTCTGAGGTCGGTGTTGCTGTTGGT AATTCTGCTGAGGTCGGTGTTGCTGTTGGTGATTCCGCTGAGGTCGGTGT TGCTGTTGGTGATTCTTCTGAAGTCGGTGTTGCTGTTGGTGATTCCGCTG AAGTCGGTGTTGCTGTTGGTGATTCTTCTGAGGTCGGTGTTGGTGTTGGT GTTGGTGATTCTTCTGAGGTCGGTGTTGGTGTTGGTGTTGGTGATTCTGC TGAGGTCGGTGTCGCTGCTGGGGATTCTGACCAACATGGCGAGTTTGTGT CACTATTTGAGCAATGGGTAGCTGACAATGTTGATCATAACATCCGAACC TTGACTGGAAAAGGAACTTTCCATGGTATGGGTATCGTTTCAATAGCATC TCGTGAAACCAAGAAGTACAAAGCAATCAAGCGCCTGAAGAAAAATGAGA GCAAGCCTCAAACAAATGGTGTTTCAATCATACCTTTCTACGGTTCACAC GAGCGTGGTTTATCGAAATTGAAATTTACCAAAATCAAAGATCTGTCAGA GAAATTTCAAAGCGAACTCACACATCATCATCAAGAAAAGACCATCGATC TGATTTGGCAAATGGCATGGCATTTTTCAACACGAGAGTCCCCGCGACCA AATTGGCAAGGCTTTATGCAAACTGCTGCAGTACCTCAAAATAGCGACGA TCCGTTTTCAAAAGCATCAGTAAAATTCCTGCCGATTATCGATCTAAGCT CTTCGGATGAAACTTGTCTTTATTCGACACTCCTATTTGTCAAAGATGAA GCAAAAAAGCAAAAGATTGAGGTACCTTGTGTAACATTTGATCAACCTTT GTGGCAGAAGGCAATTGGAATAGTGGAAGAAAAAAACCTTGATATAGTCT GTCGGCTCGGTGGGTTTCATACACTGATGAGCTTTCTGGGTAGTGTTGGA AAGGTGATGATGGGCTCTGGGCTTGAAGAGTTGTTTGAAGAAGTGTATTC GGAAGATACCGTGAAGCACATGATCTCGGGAAAGGCTTATGCTAGAGCTT TGAGGGCCCATTTGATGACACAGAGTGCATTGGTTGAACACCTAGTTGAG ATCATGGAAGATGAAGGAAAATTACAACCAACAGATAAGTTCCAGTCATG CTACTCCAAACTTTTAAAAGGAGCCCTATCAAATGAAGATCTTGAAGAAT TTCAGAATGGAGAGCACGCACAATCATTCAATAAAGAAATGCAGAAATTA ACAAGCCGTTTAAGAGAAGATTCGCGGACAGCAAAGCTATGGATCCAATA CATCGACTACGTCAACATAATAAAGGATTTCATCATCGCTGAAAGAACCT CTGATTGGCAGCTCCACCTAACAACGTTATCAAAGATGCTCAATCTTTTA GCAGCGACGGGCCATGTACACTACGCCAGGAGTGCTAGAATGTACATACA GCAAATGTCAGAACTGTCGTCGAAATATCCATACCTGTTTAACAAGTTTT CGAGTGGTCATCATGCCGTGAGGAGATCAAATCGATACTGGGCTGGTCTT TGGTCCGATCTTGTCATTGAGCAGACACTTATGAGGTCAATAAAAAGCCG TGGTGGATTGACAAGAGGTAGGGGAATGGAAGAGAATGTTCGTCAACTTT GGGTTTCAAGCATGAGCTATTGTGNGTCAAAGATGAAGCAAAAAAGCAAA AGATTGAGGTACCTTGTGTAACATTTGATCAACCTTTGTGGCAGAAGGCA ATTGGAATAGTGGAAGAAAAAAACCTTGATATAGTCTGTCGGCTCGGTGG GTTTCATACACTGATGAGCTTTCTGGGTAGTGTTGGAAAGGTGATGATGG GCTCTGGGCTTGAAGAGTTGTTTGAGGAAGTGTATTCGGAAGATACCGTG AAGCACATGATCTCGGGAAAGGCTTATGCTAGAGCTCTGAGGGCCCATTT GATGACGCAGAGTGCATTGGTTGAACACCTAGTTGAGATCATGGAAGATG AAGGAAAATTACAACCAACAGATAAGTTCCAGTCATGCTACTCCAAACTT TTAAAAGGAGCCCTATCAAATGAAGATCTTGAAGGATTTCAGAATGGAGA GCACGCACAATCATTCAATAAAGAAATGCAGAAATTAACAAGCCGTTTAA GAGAAGATTCGCGAACGGCAAAGCTATGGATCCAATACATCGACTACGTC AACATAATAAAGGATTTCATCATCGCTGAAAGAACCTCTGATTGGCAGCT CCACCTAACAACGTTATCAAAGATGCTCAATCTTTTAGCAGCGACGGGCC ATATACACTACGCCAGGAGTGCTAGAATGTACATACAGCAAATGTCAGAA CTGTCGTCGAAATATCCATACCTGTTTAACAAGTTTTCGAGTGGTCATCA TGCCGTGAGGAGATCAAATCGATACTGGGCTGGTCTTTGGTCCGATCTTG TCATTGAGCAGACACTTATGAGGTCAATAAAAAGCCGTGGTGGATTGACA AGAGGTAGGGGAATGGAAGAGAATGTTCGTCAACTTTGGGTTTCAAGCAT GAGCTATTGTGCAGCAGTTCACGATGCCATGACAAGCTTGACTGGAGTGA AGGCTCAAAGCAGTGATCAACACCAAGAGATGGGGTTTTCACGCATCAAA ACTGACTTCAAAGATTCTCTCAAGTTCTTTTGTTGGTTGGAAAAACGGAA CCCTTTTGTTTACGAGGATGCCCACTTACATTCCTTATCCTCTGGCGTAA TTGCAGTTATCGGTCAAGACAACGTCAACTGTGATGAAGCTGAGGTGGTT GGAGGGAGGATTCAAAGCTCATTAGATGGGAAATCATTCACTGACGCTTC AATTAAACGAAAGGACGAAGTGAAGTCTCTCGCTGCCATTGTGAATTCAG TAAACGTAGATGATGAAGCAATTGCTGTAGACTCCACAAGTCTTTTCACA AGACTAGCGGCAGTGGCGCAACGAGAAGAAGATGTCGAGAAATACTTTGA ATATGAGTTGACACAATTCCCTGAAGCCCTATTCAACCGTGGTTTGATGA GAAAACCAGATAAAGCTTCATTAAGGAACACCATCCTCACAGAAGAAAAG ACTTGTCATCCAGATGGGAAGTATGTTATCGATGGTGGTGCCTTGATACA TCGAGTGAGTTGGAAAAAAGGAATGACTTTCAAAGAAATCGCACGAAACC ATGTGTCATATGTCAGGAGCAATTATGGAAGCTGTTTCATTGTCTTTGAT GGCTACAACAATCCAACGTCGATTAAAGCAAATGAGCATCAACGCCGCCA GAAGACTCATGGCTCTTGTCCTGATATTGAGATTTTTCCTGACAACGAAT CAAAATATAACCGAGAGCGTTTTCTTTCCAATTGGAAGAACAAACAGCAG CTTATTGCACTCATCACAGATTCTCTTCGCTTGAATGGTCAGAATGTTTA TGTATGCGAAGGAGATGCGGATACTAAAATTGTCTCGACAGCTTTGGAAG TATCAAAAGGTGAGCCAACAATAGTGGTTGCTGACGATACCGATGTTGCT GTTATGATGGCATATCATTGGACAAAAGACCTCAAACCGTTATTGTTTCT CTCAGAACGGACAAAGAAATGCTGGGACATTGGTGCATGTCAAACGGAAT TAGGTGTAAATAAGGAGCACCTTTTATTCATTCATGCATGGACGGGCTGT GATTCTACTTCCGCTATCTGTGGCAAAGGAAAAGTTAGTTTTTTCAACCT CATCAAGAAATCGGAAGTCCTACGCGAGGTTTCCGAAATCTTTTCTGACT TTTGGACCAGTAAAGAACAAATTTATGAGGCATCAATCAACGCATTCTTG GAGCTCTATGGTGGAAAACCTGGCATGTCACTTTCATCTTTGAGGTAACC TGCCTTAAAATTGTAAAATTGCTATGATGGTTTATCATTTGATACTTTGT TATCAATGT

Coding sequence (CDS) from alignment at sc0002460:170..5128-

>TCONS_00040538 ID=TCONS_00040538|Name=TCONS_00040538|organism=Clytia hemisphaerica|type=CDS|length=2085bp|location=Sequence derived from alignment at sc0002460:170..5128- (Clytia hemisphaerica)
ATGAGCTTTCTGGGTAGTGTTGGAAAGGTGATGATGGGCTCTGGGCTTGA
AGAGTTGTTTGAGGAAGTGTATTCGGAAGATACCGTGAAGCACATGATCT
CGGGAAAGGCTTATGCTAGAGCTCTGAGGGCCCATTTGATGACGCAGAGT
GCATTGGTTGAACACCTAGTTGAGATCATGGAAGATGAAGGAAAATTACA
ACCAACAGATAAGTTCCAGTCATGCTACTCCAAACTTTTAAAAGGAGCCC
TATCAAATGAAGATCTTGAAGGATTTCAGAATGGAGAGCACGCACAATCA
TTCAATAAAGAAATGCAGAAATTAACAAGCCGTTTAAGAGAAGATTCGCG
AACGGCAAAGCTATGGATCCAATACATCGACTACGTCAACATAATAAAGG
ATTTCATCATCGCTGAAAGAACCTCTGATTGGCAGCTCCACCTAACAACG
TTATCAAAGATGCTCAATCTTTTAGCAGCGACGGGCCATATACACTACGC
CAGGAGTGCTAGAATGTACATACAGCAAATGTCAGAACTGTCGTCGAAAT
ATCCATACCTGTTTAACAAGTTTTCGAGTGGTCATCATGCCGTGAGGAGA
TCAAATCGATACTGGGCTGGTCTTTGGTCCGATCTTGTCATTGAGCAGAC
ACTTATGAGGTCAATAAAAAGCCGTGGTGGATTGACAAGAGGTAGGGGAA
TGGAAGAGAATGTTCGTCAACTTTGGGTTTCAAGCATGAGCTATTGTGCA
GCAGTTCACGATGCCATGACAAGCTTGACTGGAGTGAAGGCTCAAAGCAG
TGATCAACACCAAGAGATGGGGTTTTCACGCATCAAAACTGACTTCAAAG
ATTCTCTCAAGTTCTTTTGTTGGTTGGAAAAACGGAACCCTTTTGTTTAC
GAGGATGCCCACTTACATTCCTTATCCTCTGGCGTAATTGCAGTTATCGG
TCAAGACAACGTCAACTGTGATGAAGCTGAGGTGGTTGGAGGGAGGATTC
AAAGCTCATTAGATGGGAAATCATTCACTGACGCTTCAATTAAACGAAAG
GACGAAGTGAAGTCTCTCGCTGCCATTGTGAATTCAGTAAACGTAGATGA
TGAAGCAATTGCTGTAGACTCCACAAGTCTTTTCACAAGACTAGCGGCAG
TGGCGCAACGAGAAGAAGATGTCGAGAAATACTTTGAATATGAGTTGACA
CAATTCCCTGAAGCCCTATTCAACCGTGGTTTGATGAGAAAACCAGATAA
AGCTTCATTAAGGAACACCATCCTCACAGAAGAAAAGACTTGTCATCCAG
ATGGGAAGTATGTTATCGATGGTGGTGCCTTGATACATCGAGTGAGTTGG
AAAAAAGGAATGACTTTCAAAGAAATCGCACGAAACCATGTGTCATATGT
CAGGAGCAATTATGGAAGCTGTTTCATTGTCTTTGATGGCTACAACAATC
CAACGTCGATTAAAGCAAATGAGCATCAACGCCGCCAGAAGACTCATGGC
TCTTGTCCTGATATTGAGATTTTTCCTGACAACGAATCAAAATATAACCG
AGAGCGTTTTCTTTCCAATTGGAAGAACAAACAGCAGCTTATTGCACTCA
TCACAGATTCTCTTCGCTTGAATGGTCAGAATGTTTATGTATGCGAAGGA
GATGCGGATACTAAAATTGTCTCGACAGCTTTGGAAGTATCAAAAGGTGA
GCCAACAATAGTGGTTGCTGACGATACCGATGTTGCTGTTATGATGGCAT
ATCATTGGACAAAAGACCTCAAACCGTTATTGTTTCTCTCAGAACGGACA
AAGAAATGCTGGGACATTGGTGCATGTCAAACGGAATTAGGTGTAAATAA
GGAGCACCTTTTATTCATTCATGCATGGACGGGCTGTGATTCTACTTCCG
CTATCTGTGGCAAAGGAAAAGTTAGTTTTTTCAACCTCATCAAGAAATCG
GAAGTCCTACGCGAGGTTTCCGAAATCTTTTCTGACTTTTGGACCAGTAA
AGAACAAATTTATGAGGCATCAATCAACGCATTCTTGGAGCTCTATGGTG
GAAAACCTGGCATGTCACTTTCATCTTTGAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024665XLOC_024665Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040538-proteinTCONS_00040538-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040538-exon-sc0002460-1575043694:4337..5128TCONS_00040538-exon-sc0002460-1575043694:4337..5128Clytia hemisphaericaexon
TCONS_00040538-exon-sc0002460-1575043694:170..4066TCONS_00040538-exon-sc0002460-1575043694:170..4066Clytia hemisphaericaexon
TCONS_00040538-exon-sc0002460-1510915933:4337..5128TCONS_00040538-exon-sc0002460-1510915933:4337..5128Clytia hemisphaericaexon
TCONS_00040538-exon-sc0002460-1510915933:170..4066TCONS_00040538-exon-sc0002460-1510915933:170..4066Clytia hemisphaericaexon
TCONS_00040538-exon-sc0002460-1491911889:4337..5128TCONS_00040538-exon-sc0002460-1491911889:4337..5128Clytia hemisphaericaexon
TCONS_00040538-exon-sc0002460-1491911889:170..4066TCONS_00040538-exon-sc0002460-1491911889:170..4066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002460supercontigsc0002460:170..5128 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.112133 0 0.289516 0.202843 0.152272 0 0.00291613 0.462149 0.396043 0.130262 0.0792029 0.209118 0.0372743 0 0.0570148 0.225905 0.109679 0.581711 0.235504 0 0.339557 0.09828 0.0417301 0.0246913 0.714431 0 0 0.167003 0.0387721
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029060PIN_domain-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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