|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040530 ID=TCONS_00040530|Name=TCONS_00040530|organism=Clytia hemisphaerica|type=transcript|length=1061bp
CTCATTGGCTATCAAGATGAAATCCTTGACATCATTCAAGACTTTGCTCC
ACCTCTAATCAAacaatcgactgatgtcatgaAACGTTGCATCACTGACA
TCCAGGCGCTCCGCAAGAAGTACAGAGATAAAGATAGAGAGCTACGTTTC
TTACTCCAAGACCATCAAGACTCTCTGGAAAACTACGAACAAAAATATGC
CATGTCGGGTGGTATTCGATGCATCCATGACCACCAACTCTGGATTTTCG
CTCAATGACCTTCTCGCCAAGGGAAGGGATAACATGAACCGTCTTGTTGA
CATCTTCGTGCGGTGGAGGTGTCACTCCGTGGTTTTCCACACAGATGTTC
AAAAAATGTACAATTCAATCAAACTACATCCAAGCCACTGGGGTCTTCAG
CGTTACCTTTGGCAAGATCAGCTCGACTCTACAAAGCCACCAGAAGAAAA
AGTGATCAAAACCCTCATATATGGTATCAAATCAAGTGGCAATCAAGCAG
AAAGAGGATTGAGGGAAACTGCACGACTGTTCAAAGAGGAGCATCCACAA
ATCCATCAAATAGTTTCCATCGATGTGTATGTCGAGGATTGCCTATCAGG
AGCACCAACAGTCAACTTGGCCCACAAACTGGCAGACGATCTTGAAGTTG
TCATCAGTCATGGTGGTTTCAGTCTAAAAGGGTTCACTTTCTCTGGACAA
AGACCACAAGAATCACTATCAACAGTATCAGTGGCTGGACTTAGATGGTT
CCCTCATGAAGACGAAGTCTCACTCGATGTACAACAGCTCAACTTTGCCA
AGAAGTCACGAGGGCGAAAACCAACACTGCAATCTACAATCCCAAAGGAT
CTAACTCGACGTCAATGTGTTGCCAAAGTTGCAGAGTTATATGACATCAC
CGGACTTATCACTCCAATTGTAGCAACCATGAAGTTGGACCTCCACGATC
TGGTCAAAAGAAAGATGGATTGGGATGACGTCCTTCCAGATAACCTCAGA
AGTCTCTGGATCAATCATTTCGAGATGATGGATGAAATCAAGAAAGTCAG
ATTCAAACGTG Run BLAST on NCBI protein sequence of TCONS_00040530-protein >TCONS_00040530-protein ID=TCONS_00040530-protein|Name=TCONS_00040530-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
MPCRVVFDASMTTNSGFSLNDLLAKGRDNMNRLVDIFVRWRCHSVVFHTD
VQKMYNSIKLHPSHWGLQRYLWQDQLDSTKPPEEKVIKTLIYGIKSSGNQ
AERGLRETARLFKEEHPQIHQIVSIDVYVEDCLSGAPTVNLAHKLADDLE
VVISHGGFSLKGFTFSGQRPQESLSTVSVAGLRWFPHEDEVSLDVQQLNF
AKKSRGRKPTLQSTIPKDLTRRQCVAKVAELYDITGLITPIVATMKLDLH
DLVKRKMDWDDVLPDNLRSLWINHFEMMDEIKKVRFKR Run BLAST on NCBI transcript from alignment at sc0002455:2813..3873 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040530 ID=TCONS_00040530|Name=TCONS_00040530|organism=Clytia hemisphaerica|type=transcript|length=1061bp|location=Sequence derived from alignment at sc0002455:2813..3873 (Clytia hemisphaerica)
CACGTTTGAATCTGACTTTCTTGATTTCATCCATCATCTCGAAATGATTG
ATCCAGAGACTTCTGAGGTTATCTGGAAGGACGTCATCCCAATCCATCTT
TCTTTTGACCAGATCGTGGAGGTCCAACTTCATGGTTGCTACAATTGGAG
TGATAAGTCCGGTGATGTCATATAACTCTGCAACTTTGGCAACACATTGA
CGTCGAGTTAGATCCTTTGGGATTGTAGATTGCAGTGTTGGTTTTCGCCC
TCGTGACTTCTTGGCAAAGTTGAGCTGTTGTACATCGAGTGAGACTTCGT
CTTCATGAGGGAACCATCTAAGTCCAGCCACTGATACTGTTGATAGTGAT
TCTTGTGGTCTTTGTCCAGAGAAAGTGAACCCTTTTAGACTGAAACCACC
ATGACTGATGACAACTTCAAGATCGTCTGCCAGTTTGTGGGCCAAGTTGA
CTGTTGGTGCTCCTGATAGGCAATCCTCGACATACACATCGATGGAAACT
ATTTGATGGATTTGTGGATGCTCCTCTTTGAACAGTCGTGCAGTTTCCCT
CAATCCTCTTTCTGCTTGATTGCCACTTGATTTGATACCATATATGAGGG
TTTTGATCACTTTTTCTTCTGGTGGCTTTGTAGAGTCGAGCTGATCTTGC
CAAAGGTAACGCTGAAGACCCCAGTGGCTTGGATGTAGTTTGATTGAATT
GTACATTTTTTGAACATCTGTGTGGAAAACCACGGAGTGACACCTCCACC
GCACGAAGATGTCAACAAGACGGTTCATGTTATCCCTTCCCTTGGCGAGA
AGGTCATTGAGCGAAAATCCAGAGTTGGTGGTCATGGATGCATCGAATAC
CACCCGACATGGCATATTTTTGTTCGTAGTTTTCCAGAGAGTCTTGATGG
TCTTGGAGTAAGAAACGTAGCTCTCTATCTTTATCTCTGTACTTCTTGCG
GAGCGCCTGGATGTCAGTGATGCAACGTTtcatgacatcagtcgattgtT
TGATTAGAGGTGGAGCAAAGTCTTGAATGATGTCAAGGATTTCATCTTGA
TAGCCAATGAG Coding sequence (CDS) from alignment at sc0002455:2813..3873 >TCONS_00040530 ID=TCONS_00040530|Name=TCONS_00040530|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at sc0002455:2813..3873 (Clytia hemisphaerica)
ACGTTTGAATCTGACTTTCTTGATTTCATCCATCATCTCGAAATGATTGA
TCCAGAGACTTCTGAGGTTATCTGGAAGGACGTCATCCCAATCCATCTTT
CTTTTGACCAGATCGTGGAGGTCCAACTTCATGGTTGCTACAATTGGAGT
GATAAGTCCGGTGATGTCATATAACTCTGCAACTTTGGCAACACATTGAC
GTCGAGTTAGATCCTTTGGGATTGTAGATTGCAGTGTTGGTTTTCGCCCT
CGTGACTTCTTGGCAAAGTTGAGCTGTTGTACATCGAGTGAGACTTCGTC
TTCATGAGGGAACCATCTAAGTCCAGCCACTGATACTGTTGATAGTGATT
CTTGTGGTCTTTGTCCAGAGAAAGTGAACCCTTTTAGACTGAAACCACCA
TGACTGATGACAACTTCAAGATCGTCTGCCAGTTTGTGGGCCAAGTTGAC
TGTTGGTGCTCCTGATAGGCAATCCTCGACATACACATCGATGGAAACTA
TTTGATGGATTTGTGGATGCTCCTCTTTGAACAGTCGTGCAGTTTCCCTC
AATCCTCTTTCTGCTTGATTGCCACTTGATTTGATACCATATATGAGGGT
TTTGATCACTTTTTCTTCTGGTGGCTTTGTAGAGTCGAGCTGATCTTGCC
AAAGGTAACGCTGAAGACCCCAGTGGCTTGGATGTAGTTTGATTGAATTG
TACATTTTTTGAACATCTGTGTGGAAAACCACGGAGTGACACCTCCACCG
CACGAAGATGTCAACAAGACGGTTCATGTTATCCCTTCCCTTGGCGAGAA
GGTCATTGAGCGAAAATCCAGAGTTGGTGGTCATGGATGCATCGAATACC
ACCCGACATGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040530-exon-sc0002455-1491911889:2813..3873 | TCONS_00040530-exon-sc0002455-1491911889:2813..3873 | Clytia hemisphaerica | exon |
| TCONS_00040530-exon-sc0002455-1510915933:2813..3873 | TCONS_00040530-exon-sc0002455-1510915933:2813..3873 | Clytia hemisphaerica | exon |
| TCONS_00040530-exon-sc0002455-1575043694:2813..3873 | TCONS_00040530-exon-sc0002455-1575043694:2813..3873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002455 | supercontig | sc0002455:2813..3873 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
|
