TCONS_00040529 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040529
Unique NameTCONS_00040529
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040529 ID=TCONS_00040529|Name=TCONS_00040529|organism=Clytia hemisphaerica|type=transcript|length=512bp
NTCAAATACATCAATGCTCTTCGAAAGAAATTTACCGCAACTTCTAAAAT
CAATCCTCTAAATCAATTACCATCTTTGACCGATGAGGATATCAGCAACT
CCAGAAAATACTTCTTCAAAAAGGCAACACAAGAGGTGAAGCACTTCAAC
GATCGATCAAAGTTCAAGAAGATCTCAGAGGAAAAGGACGGAATTCTTTA
CTTCACTGGACGTATCCTGCCAACCGATCAAATCTCTACACTTGGAAAGG
CAACATCCACGATGAAGGACCTCACTGCTTCAACCTTTTGCGTCCCACTT
GTCGACAAGAATTCTCCATTGGCATATTCAATTATTATGGACATTCATTG
GAATCACCCCACCGCTCTGCACTCAGGAGTGGAAACAACATGGCGTTACG
TTCTTCAGCAATGTTTTATCTTAGAAGGACGATCACTGGTCAAGATGGTC
AGATCATCCTGTCCACGATGTCGCTACCTGCTAAAGCGGAAGTTCAATGT
CATCATGGGTCC
Run BLAST on NCBI

protein sequence of TCONS_00040529-protein

>TCONS_00040529-protein ID=TCONS_00040529-protein|Name=TCONS_00040529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
XKYINALRKKFTATSKINPLNQLPSLTDEDISNSRKYFFKKATQEVKHFN
DRSKFKKISEEKDGILYFTGRILPTDQISTLGKATSTMKDLTASTFCVPL
VDKNSPLAYSIIMDIHWNHPTALHSGVETTWRYVLQQCFILEGRSLVKMV
RSSCPRCRYLLKRKFNVIMG
Run BLAST on NCBI

transcript from alignment at sc0002455:1..512

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040529 ID=TCONS_00040529|Name=TCONS_00040529|organism=Clytia hemisphaerica|type=transcript|length=512bp|location=Sequence derived from alignment at sc0002455:1..512 (Clytia hemisphaerica)
GGACCCATGATGACATTGAACTTCCGCTTTAGCAGGTAGCGACATCGTGG
ACAGGATGATCTGACCATCTTGACCAGTGATCGTCCTTCTAAGATAAAAC
ATTGCTGAAGAACGTAACGCCATGTTGTTTCCACTCCTGAGTGCAGAGCG
GTGGGGTGATTCCAATGAATGTCCATAATAATTGAATATGCCAATGGAGA
ATTCTTGTCGACAAGTGGGACGCAAAAGGTTGAAGCAGTGAGGTCCTTCA
TCGTGGATGTTGCCTTTCCAAGTGTAGAGATTTGATCGGTTGGCAGGATA
CGTCCAGTGAAGTAAAGAATTCCGTCCTTTTCCTCTGAGATCTTCTTGAA
CTTTGATCGATCGTTGAAGTGCTTCACCTCTTGTGTTGCCTTTTTGAAGA
AGTATTTTCTGGAGTTGCTGATATCCTCATCGGTCAAAGATGGTAATTGA
TTTAGAGGATTGATTTTAGAAGTTGCGGTAAATTTCTTTCGAAGAGCATT
GATGTATTTGAN

Coding sequence (CDS) from alignment at sc0002455:1..512

>TCONS_00040529 ID=TCONS_00040529|Name=TCONS_00040529|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at sc0002455:1..512 (Clytia hemisphaerica)
ACCCATGATGACATTGAACTTCCGCTTTAGCAGGTAGCGACATCGTGGAC
AGGATGATCTGACCATCTTGACCAGTGATCGTCCTTCTAAGATAAAACAT
TGCTGAAGAACGTAACGCCATGTTGTTTCCACTCCTGAGTGCAGAGCGGT
GGGGTGATTCCAATGAATGTCCATAATAATTGAATATGCCAATGGAGAAT
TCTTGTCGACAAGTGGGACGCAAAAGGTTGAAGCAGTGAGGTCCTTCATC
GTGGATGTTGCCTTTCCAAGTGTAGAGATTTGATCGGTTGGCAGGATACG
TCCAGTGAAGTAAAGAATTCCGTCCTTTTCCTCTGAGATCTTCTTGAACT
TTGATCGATCGTTGAAGTGCTTCACCTCTTGTGTTGCCTTTTTGAAGAAG
TATTTTCTGGAGTTGCTGATATCCTCATCGGTCAAAGATGGTAATTGATT
TAGAGGATTGATTTTAGAAGTTGCGGTAAATTTCTTTCGAAGAGCATTGA
TGTATTTGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024656XLOC_024656Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040529-exon-sc0002455-1491911889:1..512TCONS_00040529-exon-sc0002455-1491911889:1..512Clytia hemisphaericaexon
TCONS_00040529-exon-sc0002455-1510915933:1..512TCONS_00040529-exon-sc0002455-1510915933:1..512Clytia hemisphaericaexon
TCONS_00040529-exon-sc0002455-1575043694:1..512TCONS_00040529-exon-sc0002455-1575043694:1..512Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040529-proteinTCONS_00040529-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002455supercontigsc0002455:1..512 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28797	1.71269	1.59088	0.845072	2.3685	2.86982	0.752677	2.11394	0.789344	0.855514	1.54214	1.1697	1.40169	1.61741	0.864326	0.570802	1.21588	0.598732	1.99148	1.43271	1.24528	1.08413	0.402753	0.244107	1.0057	2.69269	0.481654	0.514034	0.779753	0.794445
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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