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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040528 ID=TCONS_00040528|Name=TCONS_00040528|organism=Clytia hemisphaerica|type=transcript|length=1989bp GAAGCCTGTCAGtagtttgaaaaacttttttgtgaatTATTGTGGTTGAT GTTTaaggttttcttatgttttttcaACGTAGCCTCAAAATTTTACTTTg actttttgtttaaaaaggttaTGAAATGCTGATTAAAATATCTTCTAATG AAAATGCGATGGAAGTTTTAAAGAGATGAGTGAAATTTTGTGGTTCGAAG TCAAACTAGCTGTGTCAGCGCTTCTTACATACATTAACAAAGAAGGTGAC ATCACTGGTAAGAAGAAATCTGAATTATTTGAAAGTCGACAAGGTCTTTG GTTATCAGTCGGGCTGAGAAAAATCCCCGCAACACAAGTCAAACCCACAC CTATACCATTGCCTCATCCACTTCACGAGTCCAGTGATGTCTGTTTCATC TCCTCACAACCTGGAAAAGTCATGCGCAAAATCTTTGAAGAGAAAGGGAT CACTAATATTGAAAAGgtCATCAGTTTGACGAAGTTACGTAAAGAGTACA AAACGTACACATTAAAACGACAGTTGATCTCTTCATATAATATCTTCTTA TGTGAAGAAAAGANGTACAAAACGTACACATTGAAACGACAGTTGATCTC TTCATATAATATCTTTTTATGTGAAGAAAAGATTTACCATCTGGTCTGTA AATCTCTCGGAAAAGAATGCTACAAACACAAGAAGGAGCCTGTACCAGTC AGGACGGTAAACAAAGACCTGAAGAAGGAGATCGAGAAATGTCTTTCGAG CACCATGCTAAGAGTTGGACATGGACCAAGCAGTTCCATTTTGGTGGGTC AATTGAATGAGCACAAGGAAAAACAAATGGTTGAAAATTTATTGCACGCC ATGCGAATCGTCGGTCAGAAGGTACCAGGCAAGTGGAACAACATCAAATC TATGTATCTCAAAACATCGACTTCAGTTGCTCTTCCTTTGTACCAAGCGT CACCCGTTGCAACCCACGATCTTAGTGACGTCAAAGTCGATGTCGAAGAG AAGCAACGCAAGCGTAAACGTAAAGCGACGCCGTCCATCAAAAATACCAA CCTCGATGAAGTCAAGAGCGATGATGAAGGACAAAATGAGGACCAGAATG ATAAAACGGAAGACGTTGTATTGGACGGTGAGAAGGAAAATGAAGTCACT CCATTGGGAAATGAAGACATCGAAGAAAGTAATCCTGCTGTCGAGGAACA GAAGACAGTTGTTGCCAAAAACGAAAAACATCTGAGATCTTCCAAAGTCA AGAAAGCGAAAGTCGAAGAgggaaaagaagaaggaaaactCGTCAAAAAG AGAAAGGTGAAGAAAGTTACTACGCTatcagaagaagaagaaatcgaGAG TGTTCCGAAAACAAAAAAGACACCCAAGAAAAGACTACCTGCCAAAAAGA ATGGCCCAAGGAAAGTCAAATCTAAGTAGACACTATATTAAGAATAGCAG TGGACgatatttttattatatagcCTGATATAGCATATGATCGTACTTTT TCAGCCTCAGACTTTCCTTCTAATACAATAAGAGAGCaatccattgagtt tcaagcccgaagggatagagtcgagactcctggatgggaaaagAAATCAC TTATTTcctatccagaacgcccgcgcgtagtttttacacaaacgccggat tgaaactaaaatccatcgttaaatttcaaaaatgtagtcctccaaaacaa aggaaccgctaaatgcaatccgtcgtcatgattacggtgcgttctatgcg cgtttagGATAGGAAATAagaagcttcaatttctcttgcctgggaagggt taaagttttgcCTCTAGCCCTcggggcttgaaactcaatggaaaaaccct aaatttgcaatttttctacagtGTAATAATAGGCTTATTTCACTTTTTGT AGAAGAtgagattttatcaaaaattttatcatatttatgggatctgtatt tttttaaaaggaaGAAGTAGTTCTATTGTCTCGTCATAG Run BLAST on NCBI protein sequence of TCONS_00040528-protein >TCONS_00040528-protein ID=TCONS_00040528-protein|Name=TCONS_00040528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
MSEILWFEVKLAVSALLTYINKEGDITGKKKSELFESRQGLWLSVGLRKI PATQVKPTPIPLPHPLHESSDVCFISSQPGKVMRKIFEEKGITNIEKVIS LTKLRKEYKTYTLKRQLISSYNIFLCEEKXYKTYTLKRQLISSYNIFLCE EKIYHLVCKSLGKECYKHKKEPVPVRTVNKDLKKEIEKCLSSTMLRVGHG PSSSILVGQLNEHKEKQMVENLLHAMRIVGQKVPGKWNNIKSMYLKTSTS VALPLYQASPVATHDLSDVKVDVEEKQRKRKRKATPSIKNTNLDEVKSDD EGQNEDQNDKTEDVVLDGEKENEVTPLGNEDIEESNPAVEEQKTVVAKNE KHLRSSKVKKAKVEEGKEEGKLVKKRKVKKVTTLSEEEEIESVPKTKKTP KKRLPAKKNGPRKVKSK Run BLAST on NCBI transcript from alignment at sc0002455:10268..19989+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040528 ID=TCONS_00040528|Name=TCONS_00040528|organism=Clytia hemisphaerica|type=transcript|length=9722bp|location=Sequence derived from alignment at sc0002455:10268..19989+ (Clytia hemisphaerica) GAAGCCTGTCAGtagtttgaaaaacttttttgtgaatTATTGTGGTTGAT
GTTTaaggttttcttatgttttttcaACGTAGCCTCAAAATTTTACTTTg
actttttgtttaaaaaggttaTGAAATGCTGATTAAAATATCTTCTAATG
AAAATGCGATGGAAGTTTTAAAGAGATGAGTGAAATTTTGTGGTTCGAAG
TAAGCTGAGATTATTTTTGAAGTAAAAATAGAAATGCTATTAACAATTGT
TTCAGATTGTTTTGCAATTCATTTAACTTAAGGTAATTGAAATGCTCAAA
TGATAGCTTAGAATACGCTGATATGGTAAAATACTGATATTTTAATTATG
TGTGAAAGTTAGTGGCTAATTATGTCAATTTAAAGCAATTTCTCACACTT
TACAATTTATAATGTTTATTAATATTTACAATTTATCAGGTCAAACTAGC
TGTGTCAGCGCTTCTTACATACATTAACAAAGAAGGTGACATCACTGGTA
AGAAGAAATCTGAATTATTTGAAAGTCGACAAGGTCTTTGGTTATCAGTC
GGGCTGAGAAAAATCCCCGCAACACAAGTCAAACCCACACCTATGTAAGT
TCTTGTTCTTTGTCCTGTTAGGGCTTGGCTTTTACATCTCAATATTCGTC
AACATCATTGACACCAATCCAGGCCATTGAAAAGttctttgatgattttg
attttgcgtttttcttaaaaaatgcaATAACAGGATGACAGTCCTTGCGA
TCCTCAACATCCTTAAGAATATTGTTATTAACCCGAATGATAGCCATTCA
TTTGACACTTTCGTTTACTGAAAGtctccaaaagatttttaagtttGTTT
CAATAGATTTGAATTCATTGCTCTAAAATAATGCCTGCCTTTACTCGACC
TTGTTTAACATTTTTTAACGGTCAAGAAAATGACTTAACACtctctcaaa
aatatttcaaaatcataTCTACTTTCAGTCTGTATACAGACCcgataatt
tcaaaattaattgatGTAGCGGGccgtctgttgtcattgtcttttttgat
ttgagatttttcaaaccgagcACTGCGATGGAGTGCGTATGAGAAagggg
agacgacgagagaagtgttgctgtttataaattatacttcatcgcagaga
tTTCcgtatggaaatttttttatcagacAGGCAATGTGCACAGAGTGTAT
TACGAAACGGTAAACATGAGATACACTCTAGTACAGAGTAATCTACCTTA
CAACCAAACAAACGTCCGACAAAAAAATGCTAAGAATGCTAAAGTTTAGT
TCTACCTTTAAGCTGCTTTAAGCAGAAATGAATTACTTTACCTTGTCTTT
CTTTACGTTTCAGACCATTGCCTCATCCACTTCACGAGTCCAGTGATGTC
TGTTTCATCTCCTCACAACCTGGAAAAGTCATGCGCAAAATCTTTGAAGA
GAAAGGGATCACTAATATTGAAAAGGTAACAACGATGTTTGgaaggaaaa
tttaaaatgtttgGAAGGAAAGTTTAAAATGAATTTCTTCCAGGGGGATT
TCATGGGCATCATGTTGGAGTTTTGTGACactcttttttggacctacctc
gaaGTTCCTTTTAAATTAacctaccgggtgcgccacaaaaacgtttatct
ctttgaaactgattttctcgaaatcgaaaaattttaaaagaatcattcct
atttcattggaaagaagaaagataaacttaaattttgatgggtcatttga
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcattgaaattcaaccttc
ctttaaataacaaaaggtcatttagacagctaattatcatttttgatgac
tgaaacgaaaatactgatatatcatgtaattattcttctgtttaatttga
taggtcgatttttaacgtttttgaacattttctgaaagtaacttttttat
tcaattgagcataacttttgatctaatatacagtatgtggcccccaaaac
ggcgatcaaatttgaaatttctctcaaatctagaggaaaagacattttac
aaaaacttttgctgcatgaaaaactttaacatctctactttatttcctgg
aagttctttttcaaaattttcgatttcaacaatatttttcattcgcttaa
agataggtagcttttttctaatggcccccaaaacggaggtttgaaatttt
agcgatttctcgagatatctttaagatatgaatacaaaattttgaccata
gttttgaaatatgatttagagagttttgggcataaatttatttgataaaa
tttttacagtatattcctggttgtcaaaatgcaggttttgggcccccaaa
acggaggtgtagttaaaatcaaattattaagcccagtggtaataggggga
aaactatgaacatatttgtgttttcccttaNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaga
gtgagttatatgcaatttttatctaattttggtgttaaaatatttccttt
agacgcaaatatgttattttgaatctgtctcaaaccatcaaaaacagtTC
AACAGGGTCTAAAACCGCCAATGGATGCATGAAAACACCTATTTAGGGCT
TCtggagggcaaaagttttcttcataacccaaccatggtgggtgaTATTC
AAAACCACTGCATTGGAACTCAATTTTTAAGACCAAAACGGTGGTAAGGA
AAACATACCCTACATACAGTGTATGTAGATGTAAATATGTAAATACAGTG
TATTCTGAGACAATGCTATGTTGATGAGGTTAGCAAAGTTATGACGACAC
TAGGTCGTGACCTTTTTATGCAGCTTTTAAATGGAAGAGAAACAGGTGCC
TTCAGTGGATAAAATTTTGTGTGGATTGATAAATTTGAAACAGATAAAAG
TGACATGAATCTATGGGATTAATTTTCCCGTAAAGTAGTATTTTtgcaga
aattttgaaatattggtcaaacccccttggaaaatgaaagaaattggtTA
ATTAATCTCCATACAGACTTTCCAGGTAACTTTTTAAGAAGGCTGAATTG
CGAAATTTTTTCCACGCAAAAATGAAACCACATGAGGTTACCAGAGGTCA
GGAATCATGGAGTTGTGTTTTGACTTGATTTCAGGCCAAAAACCATACCN
CAGGTACCAGAGGTCAGGAATCATGGAGTTGTGTTTTTGACTTGATTTCA
GGTCAAAAACCGTACCTTTCATTAACCCAATAAATACTCTTGGAACAAAA
TCATTCTTGAAATGTCAAAATAGCATCATAGTAGGCAAGGTTTATCAGGG
TTTATCTCAAAATATGCTTGGTCATATGTACAGTATTATCATTTTTTGCG
AAAGAGGTTTTCTACTAAGACCTAGGAAACTTTTTAGGTCTCAATAATTG
ATTTATaaggaaatttaaaaatcatcaaaacccGAAACCAGGGGTAAATA
TTCGTGGGGATTTGAgtgtcatccgccaaattaatgCCCAgtggaaattt
taaaagttctaaTCCACGacattttttaagcaaaactcgaataactactt
ttaaaaagttgaattttatcTAAGAGGTGCTAAATGCGTAGTTCAACATC
CAACATGTACAATTTGACAGTACAAAGCgcaaaatcataaattttgtcTC
ATGATgatgccatccgcgaaattaagtccttTTCTCCAGATAGGTCGAAA
AATCTCAACCTACTGTTTATGCTTTGCAAATTTGAGCTTATAAACGCTCG
ATTTGTTTCGGAACTCATGTCGTGAGTCCACTTCGGTTGCTCGGATGTCT
GCATGAATAACTATTCTATGGTCCCCTTGGTAGACCCATCCATTTTGCTC
AAATGAGCAATCTCCCTTGGTGGAACCATCAATATTTTGTTCGGATGTCT
GCATGAATAACGATGATTCTATGGTCCCCTTGGTGGATCCATCCATTTTG
CTGAAATGAGCAATCTCCCTTGGTGGAACCATCAATATTTTGTTCGGATG
TCTGCATGATTACCGATGATTCTATGGTCCCCTTGGAGGATCCATCCATT
TTGCTCAAATGAGCAATCTCCCTTGGTGGAACCATCAATATTTTGTTCaa
accactttcactttcgttttcaggtCATCAGTTTGACGAAGTTACGTAAA
GAGTACAAAACGTACACATTAAAACGACAGTTGATCTCTTCATATAATAT
CTTCTTATGTGAAGAAAAGANGTACAAAACGTACACATTGAAACGACAGT
TGATCTCTTCATATAATATCTTTTTATGTGAAGAAAAGATTTACCATCTG
GTCTGTAAATCTCTCGGAAAAGAATGCTACAAACACAAGAAGTATGTCTA
GTTTTCCCTTCTCAATGTTTTCTATAGAGCATACAAATTTCTTTCAGGAT
TTGTTCCTGGGTCTTCTATAGCACAAACCATTGtgcttattttcaaaatg
gtaaatCCAGTCTAGCGGTTTTATAAAAAAGGCTTATACACGCAGCTGAG
GAAAGCTcccctgggggggggggtaggagGCTCCCCCGGACGGGTAGGGG
TACCGAGGCAAAGCAGGCTACGAGTGTACGTGCAAGCTGTAAGGACACCT
TTTTAGACCTTTGTTTCGTACGACGAACAAGTGTATAAAATATTCTGACT
AGAAAGCCAGATCAGATAGACCAACGTGCGGGATGTTTCTGAAGGGAAGT
GAGTTGGTCACAGCGCCAGCGCGCATACTTTCttcatttgtttattattt
GATGAACAGTTATCAGATGTTTCAATCAATAAAAAATGTTCTTCGATGAA
TGAAATCGCATTTGATAATTCAAAAATTACATTTGACCAACTCACTTAAC
TCACTTCAGAAACATCCCGCACGTTGGTCTATCTGATCTGGCTTTCTAGT
CAGAATATTTTATACACTTGTTCGTCGAACGAAACAAAGGTCTCAACTCT
GAAAAAGGAAGAaaggatttttttttatgaatattgACATTAAAAAACAG
CCATACTCTACAGTAGCATTCATTTCTTTTTGGAATGACCAAAGAGTTGT
CTTCTTTTTTACTTGGACAGGGAGCCTGTACCAGTTATATAGTCAATTCT
TTTTGGAATGAccaaaattgttttctttttcttggacagggagcctgtac
cagttatgtagtcatttctttttggaatgaccaaaattgttttctttttc
ttggacAGGGAGCCTGTACCAGTTATGTAGTCATTTCATTTTGGAATGAC
CAAagttgtcttctttttttcttggacAGGGAGCCTGTACCAGTTATATA
GTCAATTCTTTTTGGAATGACCAAAGAgttgtcttctttttcttggaCAG
GGAGCCTGTACCAGTTATATAGTCAATTCTTTTTGGAATGACCAAAGAgt
tgtcttctttttcttggaCAGGGAGCCTGTACCAGTTATGTTGTTATTTC
ATTTTGGAATGAccaaaattgttttctttttcttggacAGGGAGCCTGTA
CCAGTTATATTGTCATTTCATTTTGGAATGACGaaaattgtcttcttttt
ttcttggacAGGGAGCCTGTACCAGTTATATTGTCATTTCATTTTGGAAT
GACCaaaattgtcttctttttttcttggacAGGGAGCCTGTACCAGTTAT
ATAGTCAATTCTTTTTGGAATGACCAAAGAgttgtcttctttttcttgga
CAGGGAGCCTGTACCAGTTATATAGTCAATTCTTTTTGGAATGACCAAAG
AgttgtcttctttttcttggaCAGGGAGCCAGTACCAGTTATGTAGTCAT
TTCTTTTTGGAATGAccaaaattgttttctttttttcttggacagggagc
ctgtaccagttatgtagtcatttctttttggaatgaccaaaattgttttc
tttctttcttggacagggagcctgtaccagttatattatcatttcttttt
ggaatgaccaaagtcgttttctttttttcttggacAGGGAGCCTGTACCA
GTCAGGACGGTAAACAAAGACCTGAAGAAGGAGATCGAGAAATGTCTTTC
GAGCACCATGCTAAGAGTTGGACATGGACCAAGCAGGTAAGTTGTAATGA
CACATTTTTAACGTTACTCTTGAAATAATAatacctcgttgaaaagatca
tatccgaaaatagaatttttgatTTGTGGATAATTCAAGTCAATGGTTTA
TAcggggtgtcccgaaaaaaaagtatcgagtcgtaccacttctatagaaa
gaaagttatCGTGtttgtttcactaaatttgcaatgtttatcaaagtttc
tctttgtgtcatattaattgtcatgagacatcttttatgaataactttta
caaaaaataattctcaataactttaacgtcgtgaaaattgtaaagaaagt
taattaatgactgttgtaaaaacaattattgtgtttgtatatattttctt
acattttgttaaacacacgcaacaaccttctacttcttttcgggacaccc
tgtagtagACTACCGCCGTGCTCAACAGAAAGTGTATAGTGattataaaa
atcacttttgcCTTTTTCACAGGCgtgatttttttgcaaattccCACGCG
TGTGATATGAGTGTGAATCACAATCACGAAATTTCAACACGCTTTAACAC
GCGTGTGATTTGGTTGTTCCTTTGGTGTAAAAGATCTGAGAAGTGTGAAC
TGGTGTGACCACGTGTTATCATGGAAAGTGACGTCATTGGCTACCATAGC
AACCAATATAAAAGTTTTAAAGTTTGGAAAAAGTTTACACCAATCGAAAG
ACCACGAAAAACTAAAATGGTGATAATATGAGAGGAACCCGATGacgtca
attttaaaaagtgcTCGAAATTTTAAGCCTGGTTTTTGCTGCACAACAAT
CTTCACTGATAACTGTCAATACTTTATCagaatcttttgttttagcATGT
TTTATGATCTGATTATACAATTCAAAAGTTTACTTTTAATTACCTCAAGc
ggggaactaatttttgctttaaacaatctttaatatttttgtttttgttt
tcgtttttgttttcagTTCCATTTTGGTGGGTCAATTGAATGAGCACAAG
GAAAAACAAATGGTTGAAAATTTATTGCACGCCATGCGAATCGTCGGTCA
GAAGGTACCAGGCAAGTGGAACAACATCAAATCTATGTATCTCAAAACAT
CGACTTCAGTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTGCAACCCAC
GATCTTAGTGACGTCAAAGTCGATGTCGAAGAGAAGCAACGCAAGCGTAA
ACGTAAAGCGACGCCGTCCATCAAAAATACCAACCTCGATGAAGTCAAGA
GCGATGATGAAGGACAAAATGAGGACCAGAATGATAAAACGGAAGACGTT
GTATTGGACGGTGAGAAGGAAAATGAAGTCACTCCATTGGGAAATGAAGA
CATCGAAGAAAGTAATCCTGCTGTCGAGGAACAGAAGACAGTTGTTGCCA
AAAACGAAAAACATCTGAGATCTTCCAAAGTCAAGAAAGCGAAAGTCGAA
GAgggaaaagaagaaggaaaactCGTCAAAAAGAGAAAGGTGAAGAAAGT
TACTACGCTatcagaagaagaagaaatcgaGAGTGTTCCGAAAACAAAAA
AGACACCCAAGAAAAGACTACCTGCCAAAAAGAATGGCCCAAGGAAAGTC
AAATCTAAGTAGACACTATATTAAGAATAGCAGTGGACgatatttttatt
atatagcCTGATATAGCATATGATCGTACTTTTTCAGCCTCAGACTTTCC
TTCTAATACAATAAGAGAGCaatccattgagtttcaagcccgaagggata
gagtcgagactcctggatgggaaaagAAATCACTTATTTcctatccagaa
cgcccgcgcgtagtttttacacaaacgccggattgaaactaaaatccatc
gttaaatttcaaaaatgtagtcctccaaaacaaaggaaccgctaaatgca
atccgtcgtcatgattacggtgcgttctatgcgcgtttagGATAGGAAAT
AagaagcttcaatttctcttgcctgggaagggttaaagttttgcCTCTAG
CCCTcggggcttgaaactcaatggaaaaaccctaaatttgcaatttttct
acagtGTAATAATAGGCTTATTTCACTTTTTGTAGAAGAtgagattttat
caaaaattttatcatatttatgggatctgtatttttttaaaaggaaGAAG
TAGTTCTATTGTCTCGTCATAG Coding sequence (CDS) from alignment at sc0002455:10268..19989+ >TCONS_00040528 ID=TCONS_00040528|Name=TCONS_00040528|organism=Clytia hemisphaerica|type=CDS|length=7524bp|location=Sequence derived from alignment at sc0002455:10268..19989+ (Clytia hemisphaerica) ATGAGTGAAATTTTGTGGTTCGAAGTCAAACTAGCTGTGTCAGCGCTTCT TACATACATTAACAAAGAAGGTGACATCACTGGTAAGAAGAAATCTGAAT TATTTGAAAGTCGACAAGGTCTTTGGTTATCAGTCGGGCTGAGAAAAATC CCCGCAACACAAGTCAAACCCACACCTATACCATTGCCTCATCCACTTCA CGAGTCCAGTGATGTCTGTTTCATCTCCTCACAACCTGGAAAAGTCATGC GCAAAATCTTTGAAGAGAAAGGGATCACTAATATTGAAAAGgtCATCAGT TTGACGAAGTTACGTAAAGAGTACAAAACGTACACATTAAAACGACAGTT GATCTCTTCATATAATATCTTCTTATGTGAAGAAAAGANGTACAAAACGT ACACATTGAAACGACAGTTGATCTCTTCATATAATATCTTTTTATGTGAA GAAAAGATTTACCATCTGGTCTGTAAATCTCTCGGAAAAGAATGCTACAA ACACAAGAAGGAGCCTGTACCAGTCAGGACGGTAAACAAAGACCTGAAGA AGGAGATCGAGAAATGTCTTTCGAGCACCATGCTAAGAGTTGGACATGGA CCAAGCAGTTCCATTTTGGTGGGTCAATTGAATGAGCACAAGGAAAAACA AATGGTTGAAAATTTATTGCACGCCATGCGAATCGTCGGTCAGAAGGTAC CAGGCAAGTGGAACAACATCAAATCTATGTATCTCAAAACATCGACTTCA GTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTGCAACCCACGATCTTAG TGACGTCAAAGTCGATGTCGAAGAGAAGCAACGCAAGCGTAAACGTAAAG CGACGCCGTCCATCAAAAATACCAACCTCGATGAAGTCAAGAGCGATGAT GAAGGACAAAATGAGGACCAGAATGATAAAACGGAAGACGTTGTATTGGA CGGTGAGAAGGAAAATGAAGTCACTCCATTGGGAAATGAAGACATCGAAG AAAGTAATCCTGCTGTCGAGGAACAGAAGACAGTTGTTGCCAAAAACGAA AAACATCTGAGATCTTCCAAAGTCAAGAAAGCGAAAGTCGAAGAgggaaa agaagaaggaaaactCGTCAAAAAGAGAAAGGTGAAGAAAGTTACTACGC TatcagaagaagaagaaatcgaGAGTGTTCCGAAAACAAAAAAGACACCC AAGAAAAGACTACCTGCCAAAAAGAATGGCCCAAGGAAAGTCAAATCTAA GTAGATGAGTGAAATTTTGTGGTTCGAAGTCAAACTAGCTGTGTCAGCGC TTCTTACATACATTAACAAAGAAGGTGACATCACTGGTAAGAAGAAATCT GAATTATTTGAAAGTCGACAAGGTCTTTGGTTATCAGTCGGGCTGAGAAA AATCCCCGCAACACAAGTCAAACCCACACCTATACCATTGCCTCATCCAC TTCACGAGTCCAGTGATGTCTGTTTCATCTCCTCACAACCTGGAAAAGTC ATGCGCAAAATCTTTGAAGAGAAAGGGATCACTAATATTGAAAAGgtCAT CAGTTTGACGAAGTTACGTAAAGAGTACAAAACGTACACATTAAAACGAC AGTTGATCTCTTCATATAATATCTTCTTATGTGAAGAAAAGANGTACAAA ACGTACACATTGAAACGACAGTTGATCTCTTCATATAATATCTTTTTATG TGAAGAAAAGATTTACCATCTGGTCTGTAAATCTCTCGGAAAAGAATGCT ACAAACACAAGAAGGAGCCTGTACCAGTCAGGACGGTAAACAAAGACCTG AAGAAGGAGATCGAGAAATGTCTTTCGAGCACCATGCTAAGAGTTGGACA TGGACCAAGCAGTTCCATTTTGGTGGGTCAATTGAATGAGCACAAGGAAA AACAAATGGTTGAAAATTTATTGCACGCCATGCGAATCGTCGGTCAGAAG GTACCAGGCAAGTGGAACAACATCAAATCTATGTATCTCAAAACATCGAC TTCAGTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTGCAACCCACGATC TTAGTGACGTCAAAGTCGATGTCGAAGAGAAGCAACGCAAGCGTAAACGT AAAGCGACGCCGTCCATCAAAAATACCAACCTCGATGAAGTCAAGAGCGA TGATGAAGGACAAAATGAGGACCAGAATGATAAAACGGAAGACGTTGTAT TGGACGGTGAGAAGGAAAATGAAGTCACTCCATTGGGAAATGAAGACATC GAAGAAAGTAATCCTGCTGTCGAGGAACAGAAGACAGTTGTTGCCAAAAA CGAAAAACATCTGAGATCTTCCAAAGTCAAGAAAGCGAAAGTCGAAGAgg gaaaagaagaaggaaaactCGTCAAAAAGAGAAAGGTGAAGAAAGTTACT ACGCTatcagaagaagaagaaatcgaGAGTGTTCCGAAAACAAAAAAGAC ACCCAAGAAAAGACTACCTGCCAAAAAGAATGGCCCAAGGAAAGTCAAAT CTAAGTAGATGAGTGAAATTTTGTGGTTCGAAGTCAAACTAGCTGTGTCA GCGCTTCTTACATACATTAACAAAGAAGGTGACATCACTGGTAAGAAGAA ATCTGAATTATTTGAAAGTCGACAAGGTCTTTGGTTATCAGTCGGGCTGA GAAAAATCCCCGCAACACAAGTCAAACCCACACCTATACCATTGCCTCAT CCACTTCACGAGTCCAGTGATGTCTGTTTCATCTCCTCACAACCTGGAAA AGTCATGCGCAAAATCTTTGAAGAGAAAGGGATCACTAATATTGAAAAGg tCATCAGTTTGACGAAGTTACGTAAAGAGTACAAAACGTACACATTAAAA CGACAGTTGATCTCTTCATATAATATCTTCTTATGTGAAGAAAAGANGTA CAAAACGTACACATTGAAACGACAGTTGATCTCTTCATATAATATCTTTT TATGTGAAGAAAAGATTTACCATCTGGTCTGTAAATCTCTCGGAAAAGAA TGCTACAAACACAAGAAGGAGCCTGTACCAGTCAGGACGGTAAACAAAGA CCTGAAGAAGGAGATCGAGAAATGTCTTTCGAGCACCATGCTAAGAGTTG GACATGGACCAAGCAGTTCCATTTTGGTGGGTCAATTGAATGAGCACAAG GAAAAACAAATGGTTGAAAATTTATTGCACGCCATGCGAATCGTCGGTCA GAAGGTACCAGGCAAGTGGAACAACATCAAATCTATGTATCTCAAAACAT CGACTTCAGTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTGCAACCCAC GATCTTAGTGACGTCAAAGTCGATGTCGAAGAGAAGCAACGCAAGCGTAA ACGTAAAGCGACGCCGTCCATCAAAAATACCAACCTCGATGAAGTCAAGA GCGATGATGAAGGACAAAATGAGGACCAGAATGATAAAACGGAAGACGTT GTATTGGACGGTGAGAAGGAAAATGAAGTCACTCCATTGGGAAATGAAGA CATCGAAGAAAGTAATCCTGCTGTCGAGGAACAGAAGACAGTTGTTGCCA AAAACGAAAAACATCTGAGATCTTCCAAAGTCAAGAAAGCGAAAGTCGAA GAgggaaaagaagaaggaaaactCGTCAAAAAGAGAAAGGTGAAGAAAGT TACTACGCTatcagaagaagaagaaatcgaGAGTGTTCCGAAAACAAAAA AGACACCCAAGAAAAGACTACCTGCCAAAAAGAATGGCCCAAGGAAAGTC AAATCTAAGTAGATGAGTGAAATTTTGTGGTTCGAAGTCAAACTAGCTGT GTCAGCGCTTCTTACATACATTAACAAAGAAGGTGACATCACTGGTAAGA AGAAATCTGAATTATTTGAAAGTCGACAAGGTCTTTGGTTATCAGTCGGG CTGAGAAAAATCCCCGCAACACAAGTCAAACCCACACCTATACCATTGCC TCATCCACTTCACGAGTCCAGTGATGTCTGTTTCATCTCCTCACAACCTG GAAAAGTCATGCGCAAAATCTTTGAAGAGAAAGGGATCACTAATATTGAA AAGgtCATCAGTTTGACGAAGTTACGTAAAGAGTACAAAACGTACACATT AAAACGACAGTTGATCTCTTCATATAATATCTTCTTATGTGAAGAAAAGA NGTACAAAACGTACACATTGAAACGACAGTTGATCTCTTCATATAATATC TTTTTATGTGAAGAAAAGATTTACCATCTGGTCTGTAAATCTCTCGGAAA AGAATGCTACAAACACAAGAAGGAGCCTGTACCAGTCAGGACGGTAAACA AAGACCTGAAGAAGGAGATCGAGAAATGTCTTTCGAGCACCATGCTAAGA GTTGGACATGGACCAAGCAGTTCCATTTTGGTGGGTCAATTGAATGAGCA CAAGGAAAAACAAATGGTTGAAAATTTATTGCACGCCATGCGAATCGTCG GTCAGAAGGTACCAGGCAAGTGGAACAACATCAAATCTATGTATCTCAAA ACATCGACTTCAGTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTGCAAC CCACGATCTTAGTGACGTCAAAGTCGATGTCGAAGAGAAGCAACGCAAGC GTAAACGTAAAGCGACGCCGTCCATCAAAAATACCAACCTCGATGAAGTC AAGAGCGATGATGAAGGACAAAATGAGGACCAGAATGATAAAACGGAAGA CGTTGTATTGGACGGTGAGAAGGAAAATGAAGTCACTCCATTGGGAAATG AAGACATCGAAGAAAGTAATCCTGCTGTCGAGGAACAGAAGACAGTTGTT GCCAAAAACGAAAAACATCTGAGATCTTCCAAAGTCAAGAAAGCGAAAGT CGAAGAgggaaaagaagaaggaaaactCGTCAAAAAGAGAAAGGTGAAGA AAGTTACTACGCTatcagaagaagaagaaatcgaGAGTGTTCCGAAAACA AAAAAGACACCCAAGAAAAGACTACCTGCCAAAAAGAATGGCCCAAGGAA AGTCAAATCTAAGTAGATGAGTGAAATTTTGTGGTTCGAAGTCAAACTAG CTGTGTCAGCGCTTCTTACATACATTAACAAAGAAGGTGACATCACTGGT AAGAAGAAATCTGAATTATTTGAAAGTCGACAAGGTCTTTGGTTATCAGT CGGGCTGAGAAAAATCCCCGCAACACAAGTCAAACCCACACCTATACCAT TGCCTCATCCACTTCACGAGTCCAGTGATGTCTGTTTCATCTCCTCACAA CCTGGAAAAGTCATGCGCAAAATCTTTGAAGAGAAAGGGATCACTAATAT TGAAAAGgtCATCAGTTTGACGAAGTTACGTAAAGAGTACAAAACGTACA CATTAAAACGACAGTTGATCTCTTCATATAATATCTTCTTATGTGAAGAA AAGANGTACAAAACGTACACATTGAAACGACAGTTGATCTCTTCATATAA TATCTTTTTATGTGAAGAAAAGATTTACCATCTGGTCTGTAAATCTCTCG GAAAAGAATGCTACAAACACAAGAAGGAGCCTGTACCAGTCAGGACGGTA AACAAAGACCTGAAGAAGGAGATCGAGAAATGTCTTTCGAGCACCATGCT AAGAGTTGGACATGGACCAAGCAGTTCCATTTTGGTGGGTCAATTGAATG AGCACAAGGAAAAACAAATGGTTGAAAATTTATTGCACGCCATGCGAATC GTCGGTCAGAAGGTACCAGGCAAGTGGAACAACATCAAATCTATGTATCT CAAAACATCGACTTCAGTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTG CAACCCACGATCTTAGTGACGTCAAAGTCGATGTCGAAGAGAAGCAACGC AAGCGTAAACGTAAAGCGACGCCGTCCATCAAAAATACCAACCTCGATGA AGTCAAGAGCGATGATGAAGGACAAAATGAGGACCAGAATGATAAAACGG AAGACGTTGTATTGGACGGTGAGAAGGAAAATGAAGTCACTCCATTGGGA AATGAAGACATCGAAGAAAGTAATCCTGCTGTCGAGGAACAGAAGACAGT TGTTGCCAAAAACGAAAAACATCTGAGATCTTCCAAAGTCAAGAAAGCGA AAGTCGAAGAgggaaaagaagaaggaaaactCGTCAAAAAGAGAAAGGTG AAGAAAGTTACTACGCTatcagaagaagaagaaatcgaGAGTGTTCCGAA AACAAAAAAGACACCCAAGAAAAGACTACCTGCCAAAAAGAATGGCCCAA GGAAAGTCAAATCTAAGTAGATGAGTGAAATTTTGTGGTTCGAAGTCAAA CTAGCTGTGTCAGCGCTTCTTACATACATTAACAAAGAAGGTGACATCAC TGGTAAGAAGAAATCTGAATTATTTGAAAGTCGACAAGGTCTTTGGTTAT CAGTCGGGCTGAGAAAAATCCCCGCAACACAAGTCAAACCCACACCTATA CCATTGCCTCATCCACTTCACGAGTCCAGTGATGTCTGTTTCATCTCCTC ACAACCTGGAAAAGTCATGCGCAAAATCTTTGAAGAGAAAGGGATCACTA ATATTGAAAAGgtCATCAGTTTGACGAAGTTACGTAAAGAGTACAAAACG TACACATTAAAACGACAGTTGATCTCTTCATATAATATCTTCTTATGTGA AGAAAAGANGTACAAAACGTACACATTGAAACGACAGTTGATCTCTTCAT ATAATATCTTTTTATGTGAAGAAAAGATTTACCATCTGGTCTGTAAATCT CTCGGAAAAGAATGCTACAAACACAAGAAGGAGCCTGTACCAGTCAGGAC GGTAAACAAAGACCTGAAGAAGGAGATCGAGAAATGTCTTTCGAGCACCA TGCTAAGAGTTGGACATGGACCAAGCAGTTCCATTTTGGTGGGTCAATTG AATGAGCACAAGGAAAAACAAATGGTTGAAAATTTATTGCACGCCATGCG AATCGTCGGTCAGAAGGTACCAGGCAAGTGGAACAACATCAAATCTATGT ATCTCAAAACATCGACTTCAGTTGCTCTTCCTTTGTACCAAGCGTCACCC GTTGCAACCCACGATCTTAGTGACGTCAAAGTCGATGTCGAAGAGAAGCA ACGCAAGCGTAAACGTAAAGCGACGCCGTCCATCAAAAATACCAACCTCG ATGAAGTCAAGAGCGATGATGAAGGACAAAATGAGGACCAGAATGATAAA ACGGAAGACGTTGTATTGGACGGTGAGAAGGAAAATGAAGTCACTCCATT GGGAAATGAAGACATCGAAGAAAGTAATCCTGCTGTCGAGGAACAGAAGA CAGTTGTTGCCAAAAACGAAAAACATCTGAGATCTTCCAAAGTCAAGAAA GCGAAAGTCGAAGAgggaaaagaagaaggaaaactCGTCAAAAAGAGAAA GGTGAAGAAAGTTACTACGCTatcagaagaagaagaaatcgaGAGTGTTC CGAAAACAAAAAAGACACCCAAGAAAAGACTACCTGCCAAAAAGAATGGC CCAAGGAAAGTCAAATCTAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00040528-exon-sc0002455-1491911889:10268..10466 | TCONS_00040528-exon-sc0002455-1491911889:10268..10466 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1510915933:10268..10466 | TCONS_00040528-exon-sc0002455-1510915933:10268..10466 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1575043694:10268..10466 | TCONS_00040528-exon-sc0002455-1575043694:10268..10466 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1491911889:10707..10861 | TCONS_00040528-exon-sc0002455-1491911889:10707..10861 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1510915933:10707..10861 | TCONS_00040528-exon-sc0002455-1510915933:10707..10861 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1575043694:10707..10861 | TCONS_00040528-exon-sc0002455-1575043694:10707..10861 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1491911889:11631..11742 | TCONS_00040528-exon-sc0002455-1491911889:11631..11742 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1510915933:11631..11742 | TCONS_00040528-exon-sc0002455-1510915933:11631..11742 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1575043694:11631..11742 | TCONS_00040528-exon-sc0002455-1575043694:11631..11742 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1491911889:15841..16058 | TCONS_00040528-exon-sc0002455-1491911889:15841..16058 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1510915933:15841..16058 | TCONS_00040528-exon-sc0002455-1510915933:15841..16058 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1575043694:15841..16058 | TCONS_00040528-exon-sc0002455-1575043694:15841..16058 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1491911889:17705..17803 | TCONS_00040528-exon-sc0002455-1491911889:17705..17803 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1510915933:17705..17803 | TCONS_00040528-exon-sc0002455-1510915933:17705..17803 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1575043694:17705..17803 | TCONS_00040528-exon-sc0002455-1575043694:17705..17803 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1491911889:18784..19989 | TCONS_00040528-exon-sc0002455-1491911889:18784..19989 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1510915933:18784..19989 | TCONS_00040528-exon-sc0002455-1510915933:18784..19989 | Clytia hemisphaerica | exon |
| TCONS_00040528-exon-sc0002455-1575043694:18784..19989 | TCONS_00040528-exon-sc0002455-1575043694:18784..19989 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0002455 | supercontig | sc0002455:10268..19989 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00040528 vs. Swiss-Prot (Human)
Match: RL1D1 (Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1 PE=1 SV=3) HSP 1 Score: 116.701 bits (291), Expect = 1.453e-27 Identity = 77/261 (29.50%), Postives = 136/261 (52.11%), Query Frame = 2
Query: 197 EVKLAVSALLTYINKEGDITGKKKSELFESRQGLWLSVGLRKIPATQVKPTPIPLPHPLH-ESSDVC-FISSQPG-------KVMRKIFEEKGITNIEKVISLTKLRKEYKTYTLKRQLISSYNIFLCEEKXYKTYTLKRQLISSYNIFLCEEKIYHLVCKSLGKECYKHKKEPVPVRTVNKDLKKEIEKCLSSTMLRVG-HGPSSSILVGQLNEHKEKQMVENLLHAMRIVGQKVPGKWNNIKSMYLKTSTSVALPLYQA 949
+V+ AV ALLT+ + G L + L+L V L KIP+ +++ + LPH + +S D+C F +P + RK+ + GI + ++ISL L+KEYK+Y K +L+ SS++ FL + +I L+ +G+ Y+ KK PV V ++K+L +EI C+ T+L + G S+I +G + E ++EN++ + + +K+P KW ++K +++KT S ALP++ +
Sbjct: 35 QVRKAVDALLTHCKSRKNNYG----LLLNENESLFLMVVLWKIPSKELR-VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLL-----------------------SSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIE-HIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSS 266
The following BLAST results are available for this feature:
|