TCONS_00040528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040528
Unique NameTCONS_00040528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1989

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040528 ID=TCONS_00040528|Name=TCONS_00040528|organism=Clytia hemisphaerica|type=transcript|length=1989bp
GAAGCCTGTCAGtagtttgaaaaacttttttgtgaatTATTGTGGTTGAT
GTTTaaggttttcttatgttttttcaACGTAGCCTCAAAATTTTACTTTg
actttttgtttaaaaaggttaTGAAATGCTGATTAAAATATCTTCTAATG
AAAATGCGATGGAAGTTTTAAAGAGATGAGTGAAATTTTGTGGTTCGAAG
TCAAACTAGCTGTGTCAGCGCTTCTTACATACATTAACAAAGAAGGTGAC
ATCACTGGTAAGAAGAAATCTGAATTATTTGAAAGTCGACAAGGTCTTTG
GTTATCAGTCGGGCTGAGAAAAATCCCCGCAACACAAGTCAAACCCACAC
CTATACCATTGCCTCATCCACTTCACGAGTCCAGTGATGTCTGTTTCATC
TCCTCACAACCTGGAAAAGTCATGCGCAAAATCTTTGAAGAGAAAGGGAT
CACTAATATTGAAAAGgtCATCAGTTTGACGAAGTTACGTAAAGAGTACA
AAACGTACACATTAAAACGACAGTTGATCTCTTCATATAATATCTTCTTA
TGTGAAGAAAAGANGTACAAAACGTACACATTGAAACGACAGTTGATCTC
TTCATATAATATCTTTTTATGTGAAGAAAAGATTTACCATCTGGTCTGTA
AATCTCTCGGAAAAGAATGCTACAAACACAAGAAGGAGCCTGTACCAGTC
AGGACGGTAAACAAAGACCTGAAGAAGGAGATCGAGAAATGTCTTTCGAG
CACCATGCTAAGAGTTGGACATGGACCAAGCAGTTCCATTTTGGTGGGTC
AATTGAATGAGCACAAGGAAAAACAAATGGTTGAAAATTTATTGCACGCC
ATGCGAATCGTCGGTCAGAAGGTACCAGGCAAGTGGAACAACATCAAATC
TATGTATCTCAAAACATCGACTTCAGTTGCTCTTCCTTTGTACCAAGCGT
CACCCGTTGCAACCCACGATCTTAGTGACGTCAAAGTCGATGTCGAAGAG
AAGCAACGCAAGCGTAAACGTAAAGCGACGCCGTCCATCAAAAATACCAA
CCTCGATGAAGTCAAGAGCGATGATGAAGGACAAAATGAGGACCAGAATG
ATAAAACGGAAGACGTTGTATTGGACGGTGAGAAGGAAAATGAAGTCACT
CCATTGGGAAATGAAGACATCGAAGAAAGTAATCCTGCTGTCGAGGAACA
GAAGACAGTTGTTGCCAAAAACGAAAAACATCTGAGATCTTCCAAAGTCA
AGAAAGCGAAAGTCGAAGAgggaaaagaagaaggaaaactCGTCAAAAAG
AGAAAGGTGAAGAAAGTTACTACGCTatcagaagaagaagaaatcgaGAG
TGTTCCGAAAACAAAAAAGACACCCAAGAAAAGACTACCTGCCAAAAAGA
ATGGCCCAAGGAAAGTCAAATCTAAGTAGACACTATATTAAGAATAGCAG
TGGACgatatttttattatatagcCTGATATAGCATATGATCGTACTTTT
TCAGCCTCAGACTTTCCTTCTAATACAATAAGAGAGCaatccattgagtt
tcaagcccgaagggatagagtcgagactcctggatgggaaaagAAATCAC
TTATTTcctatccagaacgcccgcgcgtagtttttacacaaacgccggat
tgaaactaaaatccatcgttaaatttcaaaaatgtagtcctccaaaacaa
aggaaccgctaaatgcaatccgtcgtcatgattacggtgcgttctatgcg
cgtttagGATAGGAAATAagaagcttcaatttctcttgcctgggaagggt
taaagttttgcCTCTAGCCCTcggggcttgaaactcaatggaaaaaccct
aaatttgcaatttttctacagtGTAATAATAGGCTTATTTCACTTTTTGT
AGAAGAtgagattttatcaaaaattttatcatatttatgggatctgtatt
tttttaaaaggaaGAAGTAGTTCTATTGTCTCGTCATAG
Run BLAST on NCBI

protein sequence of TCONS_00040528-protein

>TCONS_00040528-protein ID=TCONS_00040528-protein|Name=TCONS_00040528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
MSEILWFEVKLAVSALLTYINKEGDITGKKKSELFESRQGLWLSVGLRKI
PATQVKPTPIPLPHPLHESSDVCFISSQPGKVMRKIFEEKGITNIEKVIS
LTKLRKEYKTYTLKRQLISSYNIFLCEEKXYKTYTLKRQLISSYNIFLCE
EKIYHLVCKSLGKECYKHKKEPVPVRTVNKDLKKEIEKCLSSTMLRVGHG
PSSSILVGQLNEHKEKQMVENLLHAMRIVGQKVPGKWNNIKSMYLKTSTS
VALPLYQASPVATHDLSDVKVDVEEKQRKRKRKATPSIKNTNLDEVKSDD
EGQNEDQNDKTEDVVLDGEKENEVTPLGNEDIEESNPAVEEQKTVVAKNE
KHLRSSKVKKAKVEEGKEEGKLVKKRKVKKVTTLSEEEEIESVPKTKKTP
KKRLPAKKNGPRKVKSK
Run BLAST on NCBI

transcript from alignment at sc0002455:10268..19989+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040528 ID=TCONS_00040528|Name=TCONS_00040528|organism=Clytia hemisphaerica|type=transcript|length=9722bp|location=Sequence derived from alignment at sc0002455:10268..19989+ (Clytia hemisphaerica)
GAAGCCTGTCAGtagtttgaaaaacttttttgtgaatTATTGTGGTTGAT GTTTaaggttttcttatgttttttcaACGTAGCCTCAAAATTTTACTTTg actttttgtttaaaaaggttaTGAAATGCTGATTAAAATATCTTCTAATG AAAATGCGATGGAAGTTTTAAAGAGATGAGTGAAATTTTGTGGTTCGAAG TAAGCTGAGATTATTTTTGAAGTAAAAATAGAAATGCTATTAACAATTGT TTCAGATTGTTTTGCAATTCATTTAACTTAAGGTAATTGAAATGCTCAAA TGATAGCTTAGAATACGCTGATATGGTAAAATACTGATATTTTAATTATG TGTGAAAGTTAGTGGCTAATTATGTCAATTTAAAGCAATTTCTCACACTT TACAATTTATAATGTTTATTAATATTTACAATTTATCAGGTCAAACTAGC TGTGTCAGCGCTTCTTACATACATTAACAAAGAAGGTGACATCACTGGTA AGAAGAAATCTGAATTATTTGAAAGTCGACAAGGTCTTTGGTTATCAGTC GGGCTGAGAAAAATCCCCGCAACACAAGTCAAACCCACACCTATGTAAGT TCTTGTTCTTTGTCCTGTTAGGGCTTGGCTTTTACATCTCAATATTCGTC AACATCATTGACACCAATCCAGGCCATTGAAAAGttctttgatgattttg attttgcgtttttcttaaaaaatgcaATAACAGGATGACAGTCCTTGCGA TCCTCAACATCCTTAAGAATATTGTTATTAACCCGAATGATAGCCATTCA TTTGACACTTTCGTTTACTGAAAGtctccaaaagatttttaagtttGTTT CAATAGATTTGAATTCATTGCTCTAAAATAATGCCTGCCTTTACTCGACC TTGTTTAACATTTTTTAACGGTCAAGAAAATGACTTAACACtctctcaaa aatatttcaaaatcataTCTACTTTCAGTCTGTATACAGACCcgataatt tcaaaattaattgatGTAGCGGGccgtctgttgtcattgtcttttttgat ttgagatttttcaaaccgagcACTGCGATGGAGTGCGTATGAGAAagggg agacgacgagagaagtgttgctgtttataaattatacttcatcgcagaga tTTCcgtatggaaatttttttatcagacAGGCAATGTGCACAGAGTGTAT TACGAAACGGTAAACATGAGATACACTCTAGTACAGAGTAATCTACCTTA CAACCAAACAAACGTCCGACAAAAAAATGCTAAGAATGCTAAAGTTTAGT TCTACCTTTAAGCTGCTTTAAGCAGAAATGAATTACTTTACCTTGTCTTT CTTTACGTTTCAGACCATTGCCTCATCCACTTCACGAGTCCAGTGATGTC TGTTTCATCTCCTCACAACCTGGAAAAGTCATGCGCAAAATCTTTGAAGA GAAAGGGATCACTAATATTGAAAAGGTAACAACGATGTTTGgaaggaaaa tttaaaatgtttgGAAGGAAAGTTTAAAATGAATTTCTTCCAGGGGGATT TCATGGGCATCATGTTGGAGTTTTGTGACactcttttttggacctacctc gaaGTTCCTTTTAAATTAacctaccgggtgcgccacaaaaacgtttatct ctttgaaactgattttctcgaaatcgaaaaattttaaaagaatcattcct atttcattggaaagaagaaagataaacttaaattttgatgggtcatttga NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcattgaaattcaaccttc ctttaaataacaaaaggtcatttagacagctaattatcatttttgatgac tgaaacgaaaatactgatatatcatgtaattattcttctgtttaatttga taggtcgatttttaacgtttttgaacattttctgaaagtaacttttttat tcaattgagcataacttttgatctaatatacagtatgtggcccccaaaac ggcgatcaaatttgaaatttctctcaaatctagaggaaaagacattttac aaaaacttttgctgcatgaaaaactttaacatctctactttatttcctgg aagttctttttcaaaattttcgatttcaacaatatttttcattcgcttaa agataggtagcttttttctaatggcccccaaaacggaggtttgaaatttt agcgatttctcgagatatctttaagatatgaatacaaaattttgaccata gttttgaaatatgatttagagagttttgggcataaatttatttgataaaa tttttacagtatattcctggttgtcaaaatgcaggttttgggcccccaaa acggaggtgtagttaaaatcaaattattaagcccagtggtaataggggga aaactatgaacatatttgtgttttcccttaNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaga gtgagttatatgcaatttttatctaattttggtgttaaaatatttccttt agacgcaaatatgttattttgaatctgtctcaaaccatcaaaaacagtTC AACAGGGTCTAAAACCGCCAATGGATGCATGAAAACACCTATTTAGGGCT TCtggagggcaaaagttttcttcataacccaaccatggtgggtgaTATTC AAAACCACTGCATTGGAACTCAATTTTTAAGACCAAAACGGTGGTAAGGA AAACATACCCTACATACAGTGTATGTAGATGTAAATATGTAAATACAGTG TATTCTGAGACAATGCTATGTTGATGAGGTTAGCAAAGTTATGACGACAC TAGGTCGTGACCTTTTTATGCAGCTTTTAAATGGAAGAGAAACAGGTGCC TTCAGTGGATAAAATTTTGTGTGGATTGATAAATTTGAAACAGATAAAAG TGACATGAATCTATGGGATTAATTTTCCCGTAAAGTAGTATTTTtgcaga aattttgaaatattggtcaaacccccttggaaaatgaaagaaattggtTA ATTAATCTCCATACAGACTTTCCAGGTAACTTTTTAAGAAGGCTGAATTG CGAAATTTTTTCCACGCAAAAATGAAACCACATGAGGTTACCAGAGGTCA GGAATCATGGAGTTGTGTTTTGACTTGATTTCAGGCCAAAAACCATACCN CAGGTACCAGAGGTCAGGAATCATGGAGTTGTGTTTTTGACTTGATTTCA GGTCAAAAACCGTACCTTTCATTAACCCAATAAATACTCTTGGAACAAAA TCATTCTTGAAATGTCAAAATAGCATCATAGTAGGCAAGGTTTATCAGGG TTTATCTCAAAATATGCTTGGTCATATGTACAGTATTATCATTTTTTGCG AAAGAGGTTTTCTACTAAGACCTAGGAAACTTTTTAGGTCTCAATAATTG ATTTATaaggaaatttaaaaatcatcaaaacccGAAACCAGGGGTAAATA TTCGTGGGGATTTGAgtgtcatccgccaaattaatgCCCAgtggaaattt taaaagttctaaTCCACGacattttttaagcaaaactcgaataactactt ttaaaaagttgaattttatcTAAGAGGTGCTAAATGCGTAGTTCAACATC CAACATGTACAATTTGACAGTACAAAGCgcaaaatcataaattttgtcTC ATGATgatgccatccgcgaaattaagtccttTTCTCCAGATAGGTCGAAA AATCTCAACCTACTGTTTATGCTTTGCAAATTTGAGCTTATAAACGCTCG ATTTGTTTCGGAACTCATGTCGTGAGTCCACTTCGGTTGCTCGGATGTCT GCATGAATAACTATTCTATGGTCCCCTTGGTAGACCCATCCATTTTGCTC AAATGAGCAATCTCCCTTGGTGGAACCATCAATATTTTGTTCGGATGTCT GCATGAATAACGATGATTCTATGGTCCCCTTGGTGGATCCATCCATTTTG CTGAAATGAGCAATCTCCCTTGGTGGAACCATCAATATTTTGTTCGGATG TCTGCATGATTACCGATGATTCTATGGTCCCCTTGGAGGATCCATCCATT TTGCTCAAATGAGCAATCTCCCTTGGTGGAACCATCAATATTTTGTTCaa accactttcactttcgttttcaggtCATCAGTTTGACGAAGTTACGTAAA GAGTACAAAACGTACACATTAAAACGACAGTTGATCTCTTCATATAATAT CTTCTTATGTGAAGAAAAGANGTACAAAACGTACACATTGAAACGACAGT TGATCTCTTCATATAATATCTTTTTATGTGAAGAAAAGATTTACCATCTG GTCTGTAAATCTCTCGGAAAAGAATGCTACAAACACAAGAAGTATGTCTA GTTTTCCCTTCTCAATGTTTTCTATAGAGCATACAAATTTCTTTCAGGAT TTGTTCCTGGGTCTTCTATAGCACAAACCATTGtgcttattttcaaaatg gtaaatCCAGTCTAGCGGTTTTATAAAAAAGGCTTATACACGCAGCTGAG GAAAGCTcccctgggggggggggtaggagGCTCCCCCGGACGGGTAGGGG TACCGAGGCAAAGCAGGCTACGAGTGTACGTGCAAGCTGTAAGGACACCT TTTTAGACCTTTGTTTCGTACGACGAACAAGTGTATAAAATATTCTGACT AGAAAGCCAGATCAGATAGACCAACGTGCGGGATGTTTCTGAAGGGAAGT GAGTTGGTCACAGCGCCAGCGCGCATACTTTCttcatttgtttattattt GATGAACAGTTATCAGATGTTTCAATCAATAAAAAATGTTCTTCGATGAA TGAAATCGCATTTGATAATTCAAAAATTACATTTGACCAACTCACTTAAC TCACTTCAGAAACATCCCGCACGTTGGTCTATCTGATCTGGCTTTCTAGT CAGAATATTTTATACACTTGTTCGTCGAACGAAACAAAGGTCTCAACTCT GAAAAAGGAAGAaaggatttttttttatgaatattgACATTAAAAAACAG CCATACTCTACAGTAGCATTCATTTCTTTTTGGAATGACCAAAGAGTTGT CTTCTTTTTTACTTGGACAGGGAGCCTGTACCAGTTATATAGTCAATTCT TTTTGGAATGAccaaaattgttttctttttcttggacagggagcctgtac cagttatgtagtcatttctttttggaatgaccaaaattgttttctttttc ttggacAGGGAGCCTGTACCAGTTATGTAGTCATTTCATTTTGGAATGAC CAAagttgtcttctttttttcttggacAGGGAGCCTGTACCAGTTATATA GTCAATTCTTTTTGGAATGACCAAAGAgttgtcttctttttcttggaCAG GGAGCCTGTACCAGTTATATAGTCAATTCTTTTTGGAATGACCAAAGAgt tgtcttctttttcttggaCAGGGAGCCTGTACCAGTTATGTTGTTATTTC ATTTTGGAATGAccaaaattgttttctttttcttggacAGGGAGCCTGTA CCAGTTATATTGTCATTTCATTTTGGAATGACGaaaattgtcttcttttt ttcttggacAGGGAGCCTGTACCAGTTATATTGTCATTTCATTTTGGAAT GACCaaaattgtcttctttttttcttggacAGGGAGCCTGTACCAGTTAT ATAGTCAATTCTTTTTGGAATGACCAAAGAgttgtcttctttttcttgga CAGGGAGCCTGTACCAGTTATATAGTCAATTCTTTTTGGAATGACCAAAG AgttgtcttctttttcttggaCAGGGAGCCAGTACCAGTTATGTAGTCAT TTCTTTTTGGAATGAccaaaattgttttctttttttcttggacagggagc ctgtaccagttatgtagtcatttctttttggaatgaccaaaattgttttc tttctttcttggacagggagcctgtaccagttatattatcatttcttttt ggaatgaccaaagtcgttttctttttttcttggacAGGGAGCCTGTACCA GTCAGGACGGTAAACAAAGACCTGAAGAAGGAGATCGAGAAATGTCTTTC GAGCACCATGCTAAGAGTTGGACATGGACCAAGCAGGTAAGTTGTAATGA CACATTTTTAACGTTACTCTTGAAATAATAatacctcgttgaaaagatca tatccgaaaatagaatttttgatTTGTGGATAATTCAAGTCAATGGTTTA TAcggggtgtcccgaaaaaaaagtatcgagtcgtaccacttctatagaaa gaaagttatCGTGtttgtttcactaaatttgcaatgtttatcaaagtttc tctttgtgtcatattaattgtcatgagacatcttttatgaataactttta caaaaaataattctcaataactttaacgtcgtgaaaattgtaaagaaagt taattaatgactgttgtaaaaacaattattgtgtttgtatatattttctt acattttgttaaacacacgcaacaaccttctacttcttttcgggacaccc tgtagtagACTACCGCCGTGCTCAACAGAAAGTGTATAGTGattataaaa atcacttttgcCTTTTTCACAGGCgtgatttttttgcaaattccCACGCG TGTGATATGAGTGTGAATCACAATCACGAAATTTCAACACGCTTTAACAC GCGTGTGATTTGGTTGTTCCTTTGGTGTAAAAGATCTGAGAAGTGTGAAC TGGTGTGACCACGTGTTATCATGGAAAGTGACGTCATTGGCTACCATAGC AACCAATATAAAAGTTTTAAAGTTTGGAAAAAGTTTACACCAATCGAAAG ACCACGAAAAACTAAAATGGTGATAATATGAGAGGAACCCGATGacgtca attttaaaaagtgcTCGAAATTTTAAGCCTGGTTTTTGCTGCACAACAAT CTTCACTGATAACTGTCAATACTTTATCagaatcttttgttttagcATGT TTTATGATCTGATTATACAATTCAAAAGTTTACTTTTAATTACCTCAAGc ggggaactaatttttgctttaaacaatctttaatatttttgtttttgttt tcgtttttgttttcagTTCCATTTTGGTGGGTCAATTGAATGAGCACAAG GAAAAACAAATGGTTGAAAATTTATTGCACGCCATGCGAATCGTCGGTCA GAAGGTACCAGGCAAGTGGAACAACATCAAATCTATGTATCTCAAAACAT CGACTTCAGTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTGCAACCCAC GATCTTAGTGACGTCAAAGTCGATGTCGAAGAGAAGCAACGCAAGCGTAA ACGTAAAGCGACGCCGTCCATCAAAAATACCAACCTCGATGAAGTCAAGA GCGATGATGAAGGACAAAATGAGGACCAGAATGATAAAACGGAAGACGTT GTATTGGACGGTGAGAAGGAAAATGAAGTCACTCCATTGGGAAATGAAGA CATCGAAGAAAGTAATCCTGCTGTCGAGGAACAGAAGACAGTTGTTGCCA AAAACGAAAAACATCTGAGATCTTCCAAAGTCAAGAAAGCGAAAGTCGAA GAgggaaaagaagaaggaaaactCGTCAAAAAGAGAAAGGTGAAGAAAGT TACTACGCTatcagaagaagaagaaatcgaGAGTGTTCCGAAAACAAAAA AGACACCCAAGAAAAGACTACCTGCCAAAAAGAATGGCCCAAGGAAAGTC AAATCTAAGTAGACACTATATTAAGAATAGCAGTGGACgatatttttatt atatagcCTGATATAGCATATGATCGTACTTTTTCAGCCTCAGACTTTCC TTCTAATACAATAAGAGAGCaatccattgagtttcaagcccgaagggata gagtcgagactcctggatgggaaaagAAATCACTTATTTcctatccagaa cgcccgcgcgtagtttttacacaaacgccggattgaaactaaaatccatc gttaaatttcaaaaatgtagtcctccaaaacaaaggaaccgctaaatgca atccgtcgtcatgattacggtgcgttctatgcgcgtttagGATAGGAAAT AagaagcttcaatttctcttgcctgggaagggttaaagttttgcCTCTAG CCCTcggggcttgaaactcaatggaaaaaccctaaatttgcaatttttct acagtGTAATAATAGGCTTATTTCACTTTTTGTAGAAGAtgagattttat caaaaattttatcatatttatgggatctgtatttttttaaaaggaaGAAG TAGTTCTATTGTCTCGTCATAG

Coding sequence (CDS) from alignment at sc0002455:10268..19989+

>TCONS_00040528 ID=TCONS_00040528|Name=TCONS_00040528|organism=Clytia hemisphaerica|type=CDS|length=7524bp|location=Sequence derived from alignment at sc0002455:10268..19989+ (Clytia hemisphaerica)
ATGAGTGAAATTTTGTGGTTCGAAGTCAAACTAGCTGTGTCAGCGCTTCT
TACATACATTAACAAAGAAGGTGACATCACTGGTAAGAAGAAATCTGAAT
TATTTGAAAGTCGACAAGGTCTTTGGTTATCAGTCGGGCTGAGAAAAATC
CCCGCAACACAAGTCAAACCCACACCTATACCATTGCCTCATCCACTTCA
CGAGTCCAGTGATGTCTGTTTCATCTCCTCACAACCTGGAAAAGTCATGC
GCAAAATCTTTGAAGAGAAAGGGATCACTAATATTGAAAAGgtCATCAGT
TTGACGAAGTTACGTAAAGAGTACAAAACGTACACATTAAAACGACAGTT
GATCTCTTCATATAATATCTTCTTATGTGAAGAAAAGANGTACAAAACGT
ACACATTGAAACGACAGTTGATCTCTTCATATAATATCTTTTTATGTGAA
GAAAAGATTTACCATCTGGTCTGTAAATCTCTCGGAAAAGAATGCTACAA
ACACAAGAAGGAGCCTGTACCAGTCAGGACGGTAAACAAAGACCTGAAGA
AGGAGATCGAGAAATGTCTTTCGAGCACCATGCTAAGAGTTGGACATGGA
CCAAGCAGTTCCATTTTGGTGGGTCAATTGAATGAGCACAAGGAAAAACA
AATGGTTGAAAATTTATTGCACGCCATGCGAATCGTCGGTCAGAAGGTAC
CAGGCAAGTGGAACAACATCAAATCTATGTATCTCAAAACATCGACTTCA
GTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTGCAACCCACGATCTTAG
TGACGTCAAAGTCGATGTCGAAGAGAAGCAACGCAAGCGTAAACGTAAAG
CGACGCCGTCCATCAAAAATACCAACCTCGATGAAGTCAAGAGCGATGAT
GAAGGACAAAATGAGGACCAGAATGATAAAACGGAAGACGTTGTATTGGA
CGGTGAGAAGGAAAATGAAGTCACTCCATTGGGAAATGAAGACATCGAAG
AAAGTAATCCTGCTGTCGAGGAACAGAAGACAGTTGTTGCCAAAAACGAA
AAACATCTGAGATCTTCCAAAGTCAAGAAAGCGAAAGTCGAAGAgggaaa
agaagaaggaaaactCGTCAAAAAGAGAAAGGTGAAGAAAGTTACTACGC
TatcagaagaagaagaaatcgaGAGTGTTCCGAAAACAAAAAAGACACCC
AAGAAAAGACTACCTGCCAAAAAGAATGGCCCAAGGAAAGTCAAATCTAA
GTAGATGAGTGAAATTTTGTGGTTCGAAGTCAAACTAGCTGTGTCAGCGC
TTCTTACATACATTAACAAAGAAGGTGACATCACTGGTAAGAAGAAATCT
GAATTATTTGAAAGTCGACAAGGTCTTTGGTTATCAGTCGGGCTGAGAAA
AATCCCCGCAACACAAGTCAAACCCACACCTATACCATTGCCTCATCCAC
TTCACGAGTCCAGTGATGTCTGTTTCATCTCCTCACAACCTGGAAAAGTC
ATGCGCAAAATCTTTGAAGAGAAAGGGATCACTAATATTGAAAAGgtCAT
CAGTTTGACGAAGTTACGTAAAGAGTACAAAACGTACACATTAAAACGAC
AGTTGATCTCTTCATATAATATCTTCTTATGTGAAGAAAAGANGTACAAA
ACGTACACATTGAAACGACAGTTGATCTCTTCATATAATATCTTTTTATG
TGAAGAAAAGATTTACCATCTGGTCTGTAAATCTCTCGGAAAAGAATGCT
ACAAACACAAGAAGGAGCCTGTACCAGTCAGGACGGTAAACAAAGACCTG
AAGAAGGAGATCGAGAAATGTCTTTCGAGCACCATGCTAAGAGTTGGACA
TGGACCAAGCAGTTCCATTTTGGTGGGTCAATTGAATGAGCACAAGGAAA
AACAAATGGTTGAAAATTTATTGCACGCCATGCGAATCGTCGGTCAGAAG
GTACCAGGCAAGTGGAACAACATCAAATCTATGTATCTCAAAACATCGAC
TTCAGTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTGCAACCCACGATC
TTAGTGACGTCAAAGTCGATGTCGAAGAGAAGCAACGCAAGCGTAAACGT
AAAGCGACGCCGTCCATCAAAAATACCAACCTCGATGAAGTCAAGAGCGA
TGATGAAGGACAAAATGAGGACCAGAATGATAAAACGGAAGACGTTGTAT
TGGACGGTGAGAAGGAAAATGAAGTCACTCCATTGGGAAATGAAGACATC
GAAGAAAGTAATCCTGCTGTCGAGGAACAGAAGACAGTTGTTGCCAAAAA
CGAAAAACATCTGAGATCTTCCAAAGTCAAGAAAGCGAAAGTCGAAGAgg
gaaaagaagaaggaaaactCGTCAAAAAGAGAAAGGTGAAGAAAGTTACT
ACGCTatcagaagaagaagaaatcgaGAGTGTTCCGAAAACAAAAAAGAC
ACCCAAGAAAAGACTACCTGCCAAAAAGAATGGCCCAAGGAAAGTCAAAT
CTAAGTAGATGAGTGAAATTTTGTGGTTCGAAGTCAAACTAGCTGTGTCA
GCGCTTCTTACATACATTAACAAAGAAGGTGACATCACTGGTAAGAAGAA
ATCTGAATTATTTGAAAGTCGACAAGGTCTTTGGTTATCAGTCGGGCTGA
GAAAAATCCCCGCAACACAAGTCAAACCCACACCTATACCATTGCCTCAT
CCACTTCACGAGTCCAGTGATGTCTGTTTCATCTCCTCACAACCTGGAAA
AGTCATGCGCAAAATCTTTGAAGAGAAAGGGATCACTAATATTGAAAAGg
tCATCAGTTTGACGAAGTTACGTAAAGAGTACAAAACGTACACATTAAAA
CGACAGTTGATCTCTTCATATAATATCTTCTTATGTGAAGAAAAGANGTA
CAAAACGTACACATTGAAACGACAGTTGATCTCTTCATATAATATCTTTT
TATGTGAAGAAAAGATTTACCATCTGGTCTGTAAATCTCTCGGAAAAGAA
TGCTACAAACACAAGAAGGAGCCTGTACCAGTCAGGACGGTAAACAAAGA
CCTGAAGAAGGAGATCGAGAAATGTCTTTCGAGCACCATGCTAAGAGTTG
GACATGGACCAAGCAGTTCCATTTTGGTGGGTCAATTGAATGAGCACAAG
GAAAAACAAATGGTTGAAAATTTATTGCACGCCATGCGAATCGTCGGTCA
GAAGGTACCAGGCAAGTGGAACAACATCAAATCTATGTATCTCAAAACAT
CGACTTCAGTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTGCAACCCAC
GATCTTAGTGACGTCAAAGTCGATGTCGAAGAGAAGCAACGCAAGCGTAA
ACGTAAAGCGACGCCGTCCATCAAAAATACCAACCTCGATGAAGTCAAGA
GCGATGATGAAGGACAAAATGAGGACCAGAATGATAAAACGGAAGACGTT
GTATTGGACGGTGAGAAGGAAAATGAAGTCACTCCATTGGGAAATGAAGA
CATCGAAGAAAGTAATCCTGCTGTCGAGGAACAGAAGACAGTTGTTGCCA
AAAACGAAAAACATCTGAGATCTTCCAAAGTCAAGAAAGCGAAAGTCGAA
GAgggaaaagaagaaggaaaactCGTCAAAAAGAGAAAGGTGAAGAAAGT
TACTACGCTatcagaagaagaagaaatcgaGAGTGTTCCGAAAACAAAAA
AGACACCCAAGAAAAGACTACCTGCCAAAAAGAATGGCCCAAGGAAAGTC
AAATCTAAGTAGATGAGTGAAATTTTGTGGTTCGAAGTCAAACTAGCTGT
GTCAGCGCTTCTTACATACATTAACAAAGAAGGTGACATCACTGGTAAGA
AGAAATCTGAATTATTTGAAAGTCGACAAGGTCTTTGGTTATCAGTCGGG
CTGAGAAAAATCCCCGCAACACAAGTCAAACCCACACCTATACCATTGCC
TCATCCACTTCACGAGTCCAGTGATGTCTGTTTCATCTCCTCACAACCTG
GAAAAGTCATGCGCAAAATCTTTGAAGAGAAAGGGATCACTAATATTGAA
AAGgtCATCAGTTTGACGAAGTTACGTAAAGAGTACAAAACGTACACATT
AAAACGACAGTTGATCTCTTCATATAATATCTTCTTATGTGAAGAAAAGA
NGTACAAAACGTACACATTGAAACGACAGTTGATCTCTTCATATAATATC
TTTTTATGTGAAGAAAAGATTTACCATCTGGTCTGTAAATCTCTCGGAAA
AGAATGCTACAAACACAAGAAGGAGCCTGTACCAGTCAGGACGGTAAACA
AAGACCTGAAGAAGGAGATCGAGAAATGTCTTTCGAGCACCATGCTAAGA
GTTGGACATGGACCAAGCAGTTCCATTTTGGTGGGTCAATTGAATGAGCA
CAAGGAAAAACAAATGGTTGAAAATTTATTGCACGCCATGCGAATCGTCG
GTCAGAAGGTACCAGGCAAGTGGAACAACATCAAATCTATGTATCTCAAA
ACATCGACTTCAGTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTGCAAC
CCACGATCTTAGTGACGTCAAAGTCGATGTCGAAGAGAAGCAACGCAAGC
GTAAACGTAAAGCGACGCCGTCCATCAAAAATACCAACCTCGATGAAGTC
AAGAGCGATGATGAAGGACAAAATGAGGACCAGAATGATAAAACGGAAGA
CGTTGTATTGGACGGTGAGAAGGAAAATGAAGTCACTCCATTGGGAAATG
AAGACATCGAAGAAAGTAATCCTGCTGTCGAGGAACAGAAGACAGTTGTT
GCCAAAAACGAAAAACATCTGAGATCTTCCAAAGTCAAGAAAGCGAAAGT
CGAAGAgggaaaagaagaaggaaaactCGTCAAAAAGAGAAAGGTGAAGA
AAGTTACTACGCTatcagaagaagaagaaatcgaGAGTGTTCCGAAAACA
AAAAAGACACCCAAGAAAAGACTACCTGCCAAAAAGAATGGCCCAAGGAA
AGTCAAATCTAAGTAGATGAGTGAAATTTTGTGGTTCGAAGTCAAACTAG
CTGTGTCAGCGCTTCTTACATACATTAACAAAGAAGGTGACATCACTGGT
AAGAAGAAATCTGAATTATTTGAAAGTCGACAAGGTCTTTGGTTATCAGT
CGGGCTGAGAAAAATCCCCGCAACACAAGTCAAACCCACACCTATACCAT
TGCCTCATCCACTTCACGAGTCCAGTGATGTCTGTTTCATCTCCTCACAA
CCTGGAAAAGTCATGCGCAAAATCTTTGAAGAGAAAGGGATCACTAATAT
TGAAAAGgtCATCAGTTTGACGAAGTTACGTAAAGAGTACAAAACGTACA
CATTAAAACGACAGTTGATCTCTTCATATAATATCTTCTTATGTGAAGAA
AAGANGTACAAAACGTACACATTGAAACGACAGTTGATCTCTTCATATAA
TATCTTTTTATGTGAAGAAAAGATTTACCATCTGGTCTGTAAATCTCTCG
GAAAAGAATGCTACAAACACAAGAAGGAGCCTGTACCAGTCAGGACGGTA
AACAAAGACCTGAAGAAGGAGATCGAGAAATGTCTTTCGAGCACCATGCT
AAGAGTTGGACATGGACCAAGCAGTTCCATTTTGGTGGGTCAATTGAATG
AGCACAAGGAAAAACAAATGGTTGAAAATTTATTGCACGCCATGCGAATC
GTCGGTCAGAAGGTACCAGGCAAGTGGAACAACATCAAATCTATGTATCT
CAAAACATCGACTTCAGTTGCTCTTCCTTTGTACCAAGCGTCACCCGTTG
CAACCCACGATCTTAGTGACGTCAAAGTCGATGTCGAAGAGAAGCAACGC
AAGCGTAAACGTAAAGCGACGCCGTCCATCAAAAATACCAACCTCGATGA
AGTCAAGAGCGATGATGAAGGACAAAATGAGGACCAGAATGATAAAACGG
AAGACGTTGTATTGGACGGTGAGAAGGAAAATGAAGTCACTCCATTGGGA
AATGAAGACATCGAAGAAAGTAATCCTGCTGTCGAGGAACAGAAGACAGT
TGTTGCCAAAAACGAAAAACATCTGAGATCTTCCAAAGTCAAGAAAGCGA
AAGTCGAAGAgggaaaagaagaaggaaaactCGTCAAAAAGAGAAAGGTG
AAGAAAGTTACTACGCTatcagaagaagaagaaatcgaGAGTGTTCCGAA
AACAAAAAAGACACCCAAGAAAAGACTACCTGCCAAAAAGAATGGCCCAA
GGAAAGTCAAATCTAAGTAGATGAGTGAAATTTTGTGGTTCGAAGTCAAA
CTAGCTGTGTCAGCGCTTCTTACATACATTAACAAAGAAGGTGACATCAC
TGGTAAGAAGAAATCTGAATTATTTGAAAGTCGACAAGGTCTTTGGTTAT
CAGTCGGGCTGAGAAAAATCCCCGCAACACAAGTCAAACCCACACCTATA
CCATTGCCTCATCCACTTCACGAGTCCAGTGATGTCTGTTTCATCTCCTC
ACAACCTGGAAAAGTCATGCGCAAAATCTTTGAAGAGAAAGGGATCACTA
ATATTGAAAAGgtCATCAGTTTGACGAAGTTACGTAAAGAGTACAAAACG
TACACATTAAAACGACAGTTGATCTCTTCATATAATATCTTCTTATGTGA
AGAAAAGANGTACAAAACGTACACATTGAAACGACAGTTGATCTCTTCAT
ATAATATCTTTTTATGTGAAGAAAAGATTTACCATCTGGTCTGTAAATCT
CTCGGAAAAGAATGCTACAAACACAAGAAGGAGCCTGTACCAGTCAGGAC
GGTAAACAAAGACCTGAAGAAGGAGATCGAGAAATGTCTTTCGAGCACCA
TGCTAAGAGTTGGACATGGACCAAGCAGTTCCATTTTGGTGGGTCAATTG
AATGAGCACAAGGAAAAACAAATGGTTGAAAATTTATTGCACGCCATGCG
AATCGTCGGTCAGAAGGTACCAGGCAAGTGGAACAACATCAAATCTATGT
ATCTCAAAACATCGACTTCAGTTGCTCTTCCTTTGTACCAAGCGTCACCC
GTTGCAACCCACGATCTTAGTGACGTCAAAGTCGATGTCGAAGAGAAGCA
ACGCAAGCGTAAACGTAAAGCGACGCCGTCCATCAAAAATACCAACCTCG
ATGAAGTCAAGAGCGATGATGAAGGACAAAATGAGGACCAGAATGATAAA
ACGGAAGACGTTGTATTGGACGGTGAGAAGGAAAATGAAGTCACTCCATT
GGGAAATGAAGACATCGAAGAAAGTAATCCTGCTGTCGAGGAACAGAAGA
CAGTTGTTGCCAAAAACGAAAAACATCTGAGATCTTCCAAAGTCAAGAAA
GCGAAAGTCGAAGAgggaaaagaagaaggaaaactCGTCAAAAAGAGAAA
GGTGAAGAAAGTTACTACGCTatcagaagaagaagaaatcgaGAGTGTTC
CGAAAACAAAAAAGACACCCAAGAAAAGACTACCTGCCAAAAAGAATGGC
CCAAGGAAAGTCAAATCTAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024655XLOC_024655Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040528-proteinTCONS_00040528-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040528-exon-sc0002455-1491911889:10268..10466TCONS_00040528-exon-sc0002455-1491911889:10268..10466Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1510915933:10268..10466TCONS_00040528-exon-sc0002455-1510915933:10268..10466Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1575043694:10268..10466TCONS_00040528-exon-sc0002455-1575043694:10268..10466Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1491911889:10707..10861TCONS_00040528-exon-sc0002455-1491911889:10707..10861Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1510915933:10707..10861TCONS_00040528-exon-sc0002455-1510915933:10707..10861Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1575043694:10707..10861TCONS_00040528-exon-sc0002455-1575043694:10707..10861Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1491911889:11631..11742TCONS_00040528-exon-sc0002455-1491911889:11631..11742Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1510915933:11631..11742TCONS_00040528-exon-sc0002455-1510915933:11631..11742Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1575043694:11631..11742TCONS_00040528-exon-sc0002455-1575043694:11631..11742Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1491911889:15841..16058TCONS_00040528-exon-sc0002455-1491911889:15841..16058Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1510915933:15841..16058TCONS_00040528-exon-sc0002455-1510915933:15841..16058Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1575043694:15841..16058TCONS_00040528-exon-sc0002455-1575043694:15841..16058Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1491911889:17705..17803TCONS_00040528-exon-sc0002455-1491911889:17705..17803Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1510915933:17705..17803TCONS_00040528-exon-sc0002455-1510915933:17705..17803Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1575043694:17705..17803TCONS_00040528-exon-sc0002455-1575043694:17705..17803Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1491911889:18784..19989TCONS_00040528-exon-sc0002455-1491911889:18784..19989Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1510915933:18784..19989TCONS_00040528-exon-sc0002455-1510915933:18784..19989Clytia hemisphaericaexon
TCONS_00040528-exon-sc0002455-1575043694:18784..19989TCONS_00040528-exon-sc0002455-1575043694:18784..19989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002455supercontigsc0002455:10268..19989 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.3329 31.6788 12.3095 10.0917 69.5039 56.7971 53.4662 58.5977 37.1649 37.9061 42.8492 46.762 73.4207 84.1159 51.9583 53.5763 36.3585 39.5794 12.5438 16.8877 49.4464 48.6986 48.9208 45.8612 61.8018 74.0229 18.632 21.8858 29.9381 31.1957
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016095Ribosomal_L1_3-a/b-sand
IPR028364Ribosomal_L1/biogenesis
IPR023674Ribosomal_L1-like
Blast
BLAST of TCONS_00040528 vs. Swiss-Prot (Human)
Match: RL1D1 (Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1 PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.453e-27
Identity = 77/261 (29.50%), Postives = 136/261 (52.11%), Query Frame = 2
Query:  197 EVKLAVSALLTYINKEGDITGKKKSELFESRQGLWLSVGLRKIPATQVKPTPIPLPHPLH-ESSDVC-FISSQPG-------KVMRKIFEEKGITNIEKVISLTKLRKEYKTYTLKRQLISSYNIFLCEEKXYKTYTLKRQLISSYNIFLCEEKIYHLVCKSLGKECYKHKKEPVPVRTVNKDLKKEIEKCLSSTMLRVG-HGPSSSILVGQLNEHKEKQMVENLLHAMRIVGQKVPGKWNNIKSMYLKTSTSVALPLYQA 949
            +V+ AV ALLT+     +  G     L    + L+L V L KIP+ +++   + LPH +  +S D+C F   +P        +  RK+  + GI  + ++ISL  L+KEYK+Y  K +L+                       SS++ FL + +I  L+   +G+  Y+ KK PV V  ++K+L +EI  C+  T+L +   G  S+I +G +    E  ++EN++   + + +K+P KW ++K +++KT  S ALP++ +
Sbjct:   35 QVRKAVDALLTHCKSRKNNYG----LLLNENESLFLMVVLWKIPSKELR-VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLL-----------------------SSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIE-HIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSS 266          
The following BLAST results are available for this feature:
BLAST of TCONS_00040528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL1D11.453e-2729.50Ribosomal L1 domain-containing protein 1 OS=Homo s... [more]
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