TCONS_00040528-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00040528-protein
Unique NameTCONS_00040528-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00040528-protein ID=TCONS_00040528-protein|Name=TCONS_00040528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
MSEILWFEVKLAVSALLTYINKEGDITGKKKSELFESRQGLWLSVGLRKI
PATQVKPTPIPLPHPLHESSDVCFISSQPGKVMRKIFEEKGITNIEKVIS
LTKLRKEYKTYTLKRQLISSYNIFLCEEKXYKTYTLKRQLISSYNIFLCE
EKIYHLVCKSLGKECYKHKKEPVPVRTVNKDLKKEIEKCLSSTMLRVGHG
PSSSILVGQLNEHKEKQMVENLLHAMRIVGQKVPGKWNNIKSMYLKTSTS
VALPLYQASPVATHDLSDVKVDVEEKQRKRKRKATPSIKNTNLDEVKSDD
EGQNEDQNDKTEDVVLDGEKENEVTPLGNEDIEESNPAVEEQKTVVAKNE
KHLRSSKVKKAKVEEGKEEGKLVKKRKVKKVTTLSEEEEIESVPKTKKTP
KKRLPAKKNGPRKVKSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_024655XLOC_024655Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00040528TCONS_00040528Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016095Ribosomal_L1_3-a/b-sand
IPR028364Ribosomal_L1/biogenesis
IPR023674Ribosomal_L1-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 71..129
e-value: 1.1E-6
score: 28.2
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 130..189
e-value: 4.2E-12
score: 45.6
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinPFAMPF00687Ribosomal_L1coord: 34..129
e-value: 5.1E-18
score: 65.4
coord: 129..251
e-value: 3.6E-31
score: 108.4
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinCDDcd00403Ribosomal_L1coord: 41..255
e-value: 2.91798E-31
score: 117.67
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 30..131
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 129..256

Blast
[Close]
BLAST of TCONS_00040528-protein vs. Swiss-Prot (Human)
Match: RL1D1 (Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.477e-29
Identity = 77/261 (29.50%), Postives = 136/261 (52.11%), Query Frame = 0 
Query:    8 EVKLAVSALLTYINKEGDITGKKKSELFESRQGLWLSVGLRKIPATQVKPTPIPLPHPLH-ESSDVC-FISSQPG-------KVMRKIFEEKGITNIEKVISLTKLRKEYKTYTLKRQLISSYNIFLCEEKXYKTYTLKRQLISSYNIFLCEEKIYHLVCKSLGKECYKHKKEPVPVRTVNKDLKKEIEKCLSSTMLRVG-HGPSSSILVGQLNEHKEKQMVENLLHAMRIVGQKVPGKWNNIKSMYLKTSTSVALPLYQA 258
            +V+ AV ALLT+     +  G     L    + L+L V L KIP+ +++   + LPH +  +S D+C F   +P        +  RK+  + GI  + ++ISL  L+KEYK+Y  K +L+                       SS++ FL + +I  L+   +G+  Y+ KK PV V  ++K+L +EI  C+  T+L +   G  S+I +G +    E  ++EN++   + + +K+P KW ++K +++KT  S ALP++ +
Sbjct:   35 QVRKAVDALLTHCKSRKNNYGL----LLNENESLFLMVVLWKIPSKELR-VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLL-----------------------SSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIE-HIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSS 266
The following BLAST results are available for this feature:
BLAST of TCONS_00040528-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL1D12.477e-2929.50Ribosomal L1 domain-containing protein 1 OS=Homo s... [more]
back to top