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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040524 ID=TCONS_00040524|Name=TCONS_00040524|organism=Clytia hemisphaerica|type=transcript|length=1885bp
TGTGGTGTTGTGTAAAGAGTGTAGTCAAGGAGTGTTGTCTTGTGAGGCAG
TTTTAAAAAGCCAGACCTCTTCAAAAAATCGTAAGCTGCAGGAGATGTGT
GGTACAACCCCAAACACCATCGTATCATTACAGGGTGCCACCTCATTTGT
TTGGCCGTCTTGCATTGggcttgttttttttgctcttcAAAAAGCAAATT
AATGGCAGAGCCTTTAGGGAAAATATTCTCTGCCATTGAAGATTTCAAAG
CCTGATGTAGATGTTCATTGTCAGTGACATTGCCAACATTGACACCATCT
CTATTCAcaagttcttttatttttgatttcagtttttcattttttgctgC
TAAGCTTTTCCTTTGAGTTTGGCTACTGTTGAGTTTTTGCCTAAGCAGTT
CAGAAGGCAAATATTTATTTGGTATCTTCGATGTACAATCAACACTTCTG
CTGGATAATGGGATGCGATTCTTGTTTCTATGTCTCAAAGTAATAAGTGT
AGTTCGATATTTTAAACATGCTTCacactttgaattttctttgtttttaa
ttattttacaaTTAACATGTCGTATAGTAGACTGTTTTCCTAAGTTTACA
CAAATCAGGTCTTCGACCTCTGATGCAAccaatttattttgttgattatA
GAAGGTTGCAAAGTTTGTTCCCACTCGCCTTGATTCACAAAGTTCACTAA
AATCNCGACCTCTGATGCAAccaatttattttgttgattatAGAAGGTTG
CAAAGTTTGTTCCCACTCGCCTTGATTCACAAAGTTCACTAAAATCATCA
TTGCCAATGCAAAAGCTAAAATTTGAGCACATCTCTATCAAACGAATACA
GCTAGATGTGGACAATGTCGTTccaattgattgaaaacatgaGTCATTAG
AAATATCTTTATCAACAACAATAACTTTCCAAGTAAAATCTTTGTAAATG
TTCACACTAACTAAAGTTTTCAATGCAGCATATGGTTTGTTTACTTTGGT
CAATACCATAACAGATATAAAATCTTCAGCATCAATAAAGACAAAGCCAC
GATTTCTTGAATACTGTGAAATTTTCTCTTTATCGAAACCACCAGTATCA
ATATCTGACGTTgtatatttttgttgttttgctgATTTTATTTCACATGC
ACTGTGCAGATTGTGTTGATTTGTGCCGGACCTTCTCTTTCTTCCTAGTT
TTAGCTCTGTTTGTGATGTTGGATAACATATACGGCAAGAGATATTGTGa
cgcttgaaaatgaaaatattgatctGCGGTCTGTAGTTGACCTGGGTGCC
TTTCAATGCTGATTCAACCTTTGAACAAACAACTCTACACTTTTCACAGA
CTTTTTCAGGGTGAACATCAACAGAATCATTGGTTATATCAACTCCCAAA
GCATTGAAAGCATCTTTAAAAAAAGCTGCCTCTTTAGGTTTTCTACggtc
tttcttttttttatgatgGATCAGTTTATCACCGCATAATCTACACAATT
CACTAAGGTTTGTTCGATGAAATTCAAATTCTTCTTCCATCTCTTCTTTC
AGTaatcaaagaaaaagcaaaacaagaagcaaaattttcaaaattaaccG
CCAAATTTTTTCCGATTACGTAAACAAAGTGAAAGACAACAAAAATAACC
TGAAGAACTAGGAGTTGAGTACCTACGAAAAATGAGCTGAACTCAAAGAG
CCAGACCACAGTGAAAAGAGCCAGACCACACTAGAAACTTCAGATATACA
TACCTCAAGGCATCCTCTACCAAGGAAAATTGTTcactatttgaaaaaaa
ttgtccatCTTTTCGATTTCGAGTGATTTCCATCAGTAGGTGCTGTTAGC
TACTCAACAAGACATGCCATCTTTCTTCGTTGATN Run BLAST on NCBI protein sequence of TCONS_00040524-protein >TCONS_00040524-protein ID=TCONS_00040524-protein|Name=TCONS_00040524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MEEEFEFHRTNLSELCRLCGDKLIHHKKKKDRRKPKEAAFFKDAFNALGV
DITNDSVDVHPEKVCEKCRVVCSKVESALKGTQVNYRPQINIFIFKRHNI
SCRICYPTSQTELKLGRKRRSGTNQHNLHSACEIKSAKQQKYTTSDIDTG
GFDKEKISQYSRNRGFVFIDAEDFISVMVLTKVNKPYAALKTLVSVNIYK
DFTWKVIVVDKDISNDSCFQSIGTTLSTSSCIRLIEMCSNFSFCIGNDDF
SELCESRRVGTNFATFYNQQNKLVASEVXILVNFVNQGEWEQTLQPSIIN
KINWLHQRSKT Run BLAST on NCBI transcript from alignment at sc0002454:284..2168 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040524 ID=TCONS_00040524|Name=TCONS_00040524|organism=Clytia hemisphaerica|type=transcript|length=1885bp|location=Sequence derived from alignment at sc0002454:284..2168 (Clytia hemisphaerica)
NATCAACGAAGAAAGATGGCATGTCTTGTTGAGTAGCTAACAGCACCTAC
TGATGGAAATCACTCGAAATCGAAAAGatggacaatttttttcaaatagt
gAACAATTTTCCTTGGTAGAGGATGCCTTGAGGTATGTATATCTGAAGTT
TCTAGTGTGGTCTGGCTCTTTTCACTGTGGTCTGGCTCTTTGAGTTCAGC
TCATTTTTCGTAGGTACTCAACTCCTAGTTCTTCAGGTTATTTTTGTTGT
CTTTCACTTTGTTTACGTAATCGGAAAAAATTTGGCggttaattttgaaa
attttgcttcttgttttgctttttctttgattACTGAAAGAAGAGATGGA
AGAAGAATTTGAATTTCATCGAACAAACCTTAGTGAATTGTGTAGATTAT
GCGGTGATAAACTGATCcatcataaaaaaaagaaagaccGTAGAAAACCT
AAAGAGGCAGCTTTTTTTAAAGATGCTTTCAATGCTTTGGGAGTTGATAT
AACCAATGATTCTGTTGATGTTCACCCTGAAAAAGTCTGTGAAAAGTGTA
GAGTTGTTTGTTCAAAGGTTGAATCAGCATTGAAAGGCACCCAGGTCAAC
TACAGACCGCagatcaatattttcattttcaagcgtCACAATATCTCTTG
CCGTATATGTTATCCAACATCACAAACAGAGCTAAAACTAGGAAGAAAGA
GAAGGTCCGGCACAAATCAACACAATCTGCACAGTGCATGTGAAATAAAA
TcagcaaaacaacaaaaatatacAACGTCAGATATTGATACTGGTGGTTT
CGATAAAGAGAAAATTTCACAGTATTCAAGAAATCGTGGCTTTGTCTTTA
TTGATGCTGAAGATTTTATATCTGTTATGGTATTGACCAAAGTAAACAAA
CCATATGCTGCATTGAAAACTTTAGTTAGTGTGAACATTTACAAAGATTT
TACTTGGAAAGTTATTGTTGTTGATAAAGATATTTCTAATGACtcatgtt
ttcaatcaattggAACGACATTGTCCACATCTAGCTGTATTCGTTTGATA
GAGATGTGCTCAAATTTTAGCTTTTGCATTGGCAATGATGATTTTAGTGA
ACTTTGTGAATCAAGGCGAGTGGGAACAAACTTTGCAACCTTCTataatc
aacaaaataaattggTTGCATCAGAGGTCGNGATTTTAGTGAACTTTGTG
AATCAAGGCGAGTGGGAACAAACTTTGCAACCTTCTataatcaacaaaat
aaattggTTGCATCAGAGGTCGAAGACCTGATTTGTGTAAACTTAGGAAA
ACAGTCTACTATACGACATGTTAAttgtaaaataattaaaaacaaagaaa
attcaaagtgtGAAGCATGTTTAAAATATCGAACTACACTTATTACTTTG
AGACATAGAAACAAGAATCGCATCCCATTATCCAGCAGAAGTGTTGATTG
TACATCGAAGATACCAAATAAATATTTGCCTTCTGAACTGCTTAGGCAAA
AACTCAACAGTAGCCAAACTCAAAGGAAAAGCTTAGcagcaaaaaatgaa
aaactgaaatcaaaaataaaagaacttgTGAATAGAGATGGTGTCAATGT
TGGCAATGTCACTGACAATGAACATCTACATCAGGCTTTGAAATCTTCAA
TGGCAGAGAATATTTTCCCTAAAGGCTCTGCCATTAATTTGCTTTTTgaa
gagcaaaaaaaacaagccCAATGCAAGACGGCCAAACAAATGAGGTGGCA
CCCTGTAATGATACGATGGTGTTTGGGGTTGTACCACACATCTCCTGCAG
CTTACGATTTTTTGAAGAGGTCTGGCTTTTTAAAACTGCCTCACAAGACA
ACACTCCTTGACTACACTCTTTACACAACACCACA Coding sequence (CDS) from alignment at sc0002454:284..2168 >TCONS_00040524 ID=TCONS_00040524|Name=TCONS_00040524|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0002454:284..2168 (Clytia hemisphaerica)
ATGGAAGAAGAATTTGAATTTCATCGAACAAACCTTAGTGAATTGTGTAG
ATTATGCGGTGATAAACTGATCcatcataaaaaaaagaaagaccGTAGAA
AACCTAAAGAGGCAGCTTTTTTTAAAGATGCTTTCAATGCTTTGGGAGTT
GATATAACCAATGATTCTGTTGATGTTCACCCTGAAAAAGTCTGTGAAAA
GTGTAGAGTTGTTTGTTCAAAGGTTGAATCAGCATTGAAAGGCACCCAGG
TCAACTACAGACCGCagatcaatattttcattttcaagcgtCACAATATC
TCTTGCCGTATATGTTATCCAACATCACAAACAGAGCTAAAACTAGGAAG
AAAGAGAAGGTCCGGCACAAATCAACACAATCTGCACAGTGCATGTGAAA
TAAAATcagcaaaacaacaaaaatatacAACGTCAGATATTGATACTGGT
GGTTTCGATAAAGAGAAAATTTCACAGTATTCAAGAAATCGTGGCTTTGT
CTTTATTGATGCTGAAGATTTTATATCTGTTATGGTATTGACCAAAGTAA
ACAAACCATATGCTGCATTGAAAACTTTAGTTAGTGTGAACATTTACAAA
GATTTTACTTGGAAAGTTATTGTTGTTGATAAAGATATTTCTAATGACtc
atgttttcaatcaattggAACGACATTGTCCACATCTAGCTGTATTCGTT
TGATAGAGATGTGCTCAAATTTTAGCTTTTGCATTGGCAATGATGATTTT
AGTGAACTTTGTGAATCAAGGCGAGTGGGAACAAACTTTGCAACCTTCTa
taatcaacaaaataaattggTTGCATCAGAGGTCGNGATTTTAGTGAACT
TTGTGAATCAAGGCGAGTGGGAACAAACTTTGCAACCTTCTataatcaac
aaaataaattggTTGCATCAGAGGTCGAAGACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040524-exon-sc0002454-1491911889:284..2168 | TCONS_00040524-exon-sc0002454-1491911889:284..2168 | Clytia hemisphaerica | exon |
| TCONS_00040524-exon-sc0002454-1510915933:284..2168 | TCONS_00040524-exon-sc0002454-1510915933:284..2168 | Clytia hemisphaerica | exon |
| TCONS_00040524-exon-sc0002454-1575043694:284..2168 | TCONS_00040524-exon-sc0002454-1575043694:284..2168 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002454 | supercontig | sc0002454:284..2168 . |
Blast
The following BLAST results are available for this feature:
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