TCONS_00040520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040520
Unique NameTCONS_00040520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2136

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040520 ID=TCONS_00040520|Name=TCONS_00040520|organism=Clytia hemisphaerica|type=transcript|length=2136bp
AAAGACGCTCTCTCCAATTTTTCCGAGAAATAATCCAATATCATGTTATT
TGGAACGATGTCCATTTAGAAGAGAAATTTATGAAGAAGATACAacaaaa
ctatttcaaattcTTCTCAATAAAAGTCTTCAACCAAATACTTTCAGTTG
CTTAAAAGTTGCTcatatttcttttatagaaaTCAGGTTGAAAGAAGATT
TCATTCAAGTTTCAATCACCACAGTTAGCAAACAAACTCATGATGAATTC
CACGCTTACCCGGTTCGAAAAGACATCCGCGGGGGAACACCGCTACCTCC
AAAAGCGGATCGATTAAACATTGTCTTTCTGATGGTCGATTCTACATCGC
ACTCCTCCGCAGAGAGATATTTGAAAAAGACGATGAAGAAGATGAAAGAA
AGTCAGAGCACAGTTATCTTAAATggTCACAATATTGTAGGGGATGGGAC
CACAGCACAAAACTGCGCCATCTTTGCAGGAGAGTTAGAGGATAAACTAC
CGGAAGCGAGGCGAGGCCACAAAAAAGCAGATTACGTTGACCGGTGGCCA
TTTCTATGGCAGGATTTCAAGAAGGCAGGCTACACCACTCTCTATTCTGA
AGACGGCCCGCCTGTGAGCAACACCTTTAACTACCGTTTAAAAGGGTTTA
ATGAACCTCCGACCGACCGCTATCTAAGAAATTTCTGGGTTGCTGGAAAA
ACATTTATcaataaattgaataaagaaaACTCCAAATGCAGTTTTCAAAT
TAATCACAGATATTTCAAGCAATTTATGACAAACTTTCACGACAAGTTAA
AATTCGCATACGTTGTTTCCGACCTTCCACacaaccaatcgccgaaagtt
cAACTTGTCGATGATGATTTTCTCGAAGTTTTggaattttttgagaaatc
tgGTCATTATGAAAACACACTTTTGATCGTCTTCGGAGACCATGGTGATC
GGACTGGCGATTACCGGGCTACCATGACCGGGAAATTAGAAGAGAGACTC
CCTTTTATGTCTTTTACATTACCACCCTGGTTTCCGGAGCAATTTCCGGA
CCAATTCAGGAACCTACAACGGAACGCAAACTTGCTGACATCACATTTCG
ATGTTTACGCAACGTTACGTCATCTAATGACTTTTCCAGACGTCAAACAT
AAACATAAATACGGAAGTAGCCTATTTACTGATCTCTCTCCtctcaatcg
aacttgtcgcgAGATCGGAGTTTTAGATCACTGGTGTTCTTGTCTAGATT
ACGAAGAGATAAAGACAAGCGACCAGATGGCTTTGAGAGCAGCGGAAGCC
ATCATTAAAACAATCAACGAGAAAAACGCTAAAATCGAATCAGCTAAAAA
TCAGTGCGCTACATTGACGCTAGATAAGATCATACGCGCCGGGCTTGTCG
CACCTGGATCGCgcgttcaaaaattttcgcaCACTTTTAAAGATAAGACT
TGTGATGAGTGTGGAGTAAAGgagaaaaatgacgtcaaattcaaagtcaa
aaattacgAAGTGGTTTTCACGGTGTtaccaagccatggaaaatatGAAG
CAACTGCAGTGCTGGATATTTCGAGCGGGAAATTCACAGCCAGTGACGCT
ATTAGCCGAATCAATATGTATGCAAATCAACCGCATTGTGTTATGAAAGA
ATTTCCTCATTTAAGACCTTTTTGCTACTGTAAAAAACAATTAGACTCTT
AACTTTactttttattagaattttaaCGCTTTATTGTATCAGCCCATAGA
AGGCAGCCCACGAGCGTCGAAAAAGACAGTTTTTTTGGTTTCACCTGAGC
GGGCCACCTTCTTAAGGCAATACATTtagataaaataaataaataattgc
TAAAATCAGGAGATTTACTCCTGtaaaccaaaaatgaagtttttagcATT
AAGGGACAAaaggttttcttcttcttcatttcttaaaatcttactatact
aaaagagtttatgaaaaatttctgtaATGCTAGCCCATAATTAAGAGACA
TCTCCGTCTATCACGGGCTTCACATAGCCGTAAGAGTATACAGATATAGG
TAATCTATGGCGTAAAGAATGTAAGtttgaaaattagcgttttgaggGAG
AAACCGTTGCAGTgtaaatctttcgcaaatttaaaa
Run BLAST on NCBI

protein sequence of TCONS_00040520-protein

>TCONS_00040520-protein ID=TCONS_00040520-protein|Name=TCONS_00040520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp
KTLSPIFPRNNPISCYLERCPFRREIYEEDTTKLFQILLNKSLQPNTFSC
LKVAHISFIEIRLKEDFIQVSITTVSKQTHDEFHAYPVRKDIRGGTPLPP
KADRLNIVFLMVDSTSHSSAERYLKKTMKKMKESQSTVILNGHNIVGDGT
TAQNCAIFAGELEDKLPEARRGHKKADYVDRWPFLWQDFKKAGYTTLYSE
DGPPVSNTFNYRLKGFNEPPTDRYLRNFWVAGKTFINKLNKENSKCSFQI
NHRYFKQFMTNFHDKLKFAYVVSDLPHNQSPKVQLVDDDFLEVLEFFEKS
GHYENTLLIVFGDHGDRTGDYRATMTGKLEERLPFMSFTLPPWFPEQFPD
QFRNLQRNANLLTSHFDVYATLRHLMTFPDVKHKHKYGSSLFTDLSPLNR
TCREIGVLDHWCSCLDYEEIKTSDQMALRAAEAIIKTINEKNAKIESAKN
QCATLTLDKIIRAGLVAPGSRVQKFSHTFKDKTCDECGVKEKNDVKFKVK
NYEVVFTVLPSHGKYEATAVLDISSGKFTASDAISRINMYANQPHCVMKE
FPHLRPFCYCKKQLDS
Run BLAST on NCBI

transcript from alignment at sc0002453:3236..9040+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040520 ID=TCONS_00040520|Name=TCONS_00040520|organism=Clytia hemisphaerica|type=transcript|length=5805bp|location=Sequence derived from alignment at sc0002453:3236..9040+ (Clytia hemisphaerica)
AAAGACGCTCTCTCCAATTTTTCCGAGAAATAATCCAATATCATGTTATT
TGGAACGATGTCCATTTAGAAGAGAAATTTATGAAGAAGATACAacaaaa
ctatttcaaattcTTCTCAATAAAAGTCTTCAACCAAATACTTTCAGTTG
CTTAAAAGTTGCTcatatttcttttatagaaaTCAGGTTGAAAGAAGATT
TCATTCAAGTTTCAATCACCACAGTTAGCAAACAAACTCATGATGAATTC
CACGCTTACCCGGTTCGAAAAGACATCCGCGGGGGAACACCGCTACCTCC
AAAAGCGGATCGATTAAACATTGTCTTTCTGATGGTCGATTCTACATCGC
ACTCCTCCGCAGAGAGATATTTGAAAAAGACGATGAAGAAGATGAAAGAA
AGTCAGAGCACAGTTATCTTAAATGTAAGCGGTGAAAGTCACGTGATAGA
TTATCCAACCAATaagaaaacaattattttgtgtcgtatagaggtttttc
atattaagttaagttacgtaatttccgccattataaaagcaaacgttcga
tttgcataagAGATCGCCTCACACAAATCTTATATGAAACACTAGATAGt
gctactctgtatttcccaagcaacggtAGGTGAAGCATAATAACCCGcca
tttttgttaaaagttgGTCACAGTAGGTCACATTAGAAACCTCactgttg
aaacttttttgacaatGCAActacttcaaaatttcaaagtagcgAATCAT
TTTGCTTaatctagtgttttataaagATGTATGTGGTTCGCCTCTACaga
atcgaacgtttgctttcataatggcggaagttACGTAATAGGAAATAAat
ctacagttgactctctctaattcgaacttatagggaccaaaaattttatt
cgaattagagaaagaaacGAATCACAGTATGtaattttagtatatttttc
gGTTGAGGGGAGCAattttttagttcgaattagagaaagaatcgaataat
agaagttcaaattagagagagagttgactTTATAGAGTTCTACGAATCAG
ACTGATTTTCCGGCTTAAACTTTTTTGATCATATGGGCCATATATTTGCG
AATAAGATTTGGATTTCAGGAACTGGTTTTACCAAAGAACTGCTTAGTCA
gcaaaaatattagaaaatcaaaaaggtggctttttatttatttttagggT
CACAATATTGTAGGGGATGGGACCACAGCACAAAACTGCGCCATCTTTGC
AGGAGAGTTAGAGGATAAACTACCGGAAGCGAGGCGAGGCCACAAAAAAG
CAGGTAAGGTTGATAGgctatttcacagtcgaaatgaatcatgggtaatc
aggaccgaTAGTAATTCATCATTAgtgcgcagtggtcctgatcatagatt
tataaagcccgaagggctagatgtcaggctttaagccatcacaggcaaaa
aaaaagtgaagtgaatatcggaaaaaagaatgttgctattgttttcgaaa
acccgcgaaacttctgattggtcaatcggtgaaattctattgtaatgtca
cgtgacttaggtaggatttcgtACCTAAGCacagcacacttttcagcaaa
agctttataaatcttataaatctatggtcctgattacccattacgctttg
caaCTGTGATATGGCTTATACAAAGGTAGTCTAGTACGCTAGAGGACAAA
CTTAGACATAAATTCAAGTGTCTATAACTTGAAAACGCACCCgggacaca
aatttgttcgagttataaagtTTTCAAGTTATAGAGTAAGGGTTTCATca
gacattgttaactgaagggagaagaaaacttgttcgatttAAGGATCATA
AAAAACTCAAGTCTAATACGAAGGCATGTGTTAGAAATGGAAAAACGGAA
AATTAGAGCTTCGTTTCTCCaagggcaaaaaaaaaacaagttcatAAACT
TGAACAAAAACCAGAAGTATGGGAGGCGTAATTAATGACCCAAAAAAACT
AGTCCTAAAATACACCTGGAAGTTTTAGTATCAAATTTTActaagtttct
tttttttcgcgGGACATGTCTGCCTTGTGAGAGAGCAGAAAAGTatccca
gacggcacacaacgtcaaaacaacgtccatttgacattcataacgtccaa
ataacgttatttgaacatTAAAACAATGTTGTGTTCTTACCATTTCAGAT
TACGTTGACCGGTGGCCATTTCTATGGCAGGATTTCAAGAAGGCAGGCTA
CACCACTCTCTATTCTGAAGACGNCTCCAGGGGATTAAGGCGggttcgtg
gaggtcaaaatccttgcaacgttacaaatcattttcagaagctcgttttt
ggctcaaacgaagcgtataactaattagaataagattcagtccaggcaga
tgttttttcattttgaaattttgcgtaattcgcaataatcctcaattttg
cgctattttgatgacgtcataaaaattgaaattccaataacttttgatag
aatcatcaaaataatttcaaactttcNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAATCCTAAAAACATtaataatatgcat
ctttggtcaaaatttgaaattattttgataattctatcaaaagttattgg
gatttcaattttcatgacgtcatcaatatagcgcaaaattgaggattttt
gcgaattacgcaaaatttcaaaatgaaaaaacatctgcctagactgaatc
ctattctacttcctcatacgcttcgtttgagcccaaaatgagcttctgaa
aatgatttgtaacgttgcaagcattttgaccccgccttaatcccctTGAG
TGGCCATTTCTATGGCAGGATTTCAAGAAGGCAGGCTACACCACTCTCTA
TTCTGAAGACGGCCCGCCTGTGAGCAACACCTTTAACTACCGTTTAAAAG
GGTTTAATGAACCTCCGACCGACCGCTATCTAAGAAATTTCTGGGTTGCT
GGAAAAACATTTATcaataaattgaataaagaaaACTCCAAATGCAGTTT
TCAAATTAATCACAGGTAATACATTGTTTTTTTATCGTATTATATTTTGG
GCAGAGTACAGTTATTTTTTCGATTTGTTGGTTTTTATAGTCTTCTTCTT
TTTATAGGCTCTTTCGATAGCTTTCTATCCAAAAATCTGGTACGCTTTGT
TAACTCTAACGTTCATTTACCTGAGTGAAAACTGACTGTCTACATACTCT
TCTTtatcgaaagggtaataaagGGCCGACGTTAAGGTTATATCTTTTTA
TAACGAGAAAAACCGTATACACGCAACAAAACTCGTGATCAAATGTGACC
ATACATAATAAAATTCTAACAAAATGAATCTCACTGGATTAACAAACTTA
ACTAATAACCACTACAATCACCAATAAACGATACTTTCTggtttttttcc
aattttgtgagctctgtcagtatccttgaatttgttttgtgttttgtttc
tacagttTTACGGTTCTATAATCTGCAATTTTGTGAGCTCTGTCAGTATC
CTTgggtttttttttgtgttttgtttctaaagcatatttttttttcatag
aatataattatctttttatttaaatatgattatttttacataggacgaat
agccattgTAAAATATGGAAGAGCCTGAAAGACAATTAATGAAGAAAAAA
AAATTTCAGCCTAATGTTTCTTTTTTAGATATTTCAAGCAATTTATGACA
AACTTTCACGACAAGTTAAAATTCGCATACGTTGTTTCCGACCTTCCACa
caaccaatcgccgaaagttcAACTTGTCGATGATGATTTTCTCGAAGTTT
TggaattttttgagaaatctgGTCATTATGAAAACACACTTTTGATCGTC
TTCGGAGACCATGGTGATCGGACTGGCGATTACCGGGCTACCATGACCGG
GAAATTAGAAGAGAGACTCCCTTTTATGTCTTTTACATTACCACCCTGGT
TTCCGGAGCAATTTCCGGACCAATTCAGGAACCTACAACGGAACGCAAAC
TTGCTGACATCACATTTCGATGTTTACGCAACGTTACGTCATCTAATGAC
TTTTCCAGACGTCAAACATAAACATAAATACGGAAGTAGCCTATTTACTG
ATCTCTCTCCtctcaatcgaacttgtcgcgAGATCGGAGTTTTAGATCAC
TGGTGTTCTTGTCTAGATTACGAAGAGATAAAGACAAGCGACCAGATGGC
TTTGAGAGCAGCGGAAGCCATCATTAAAACAATCAACGAGAAAAACGCTA
AAATCGAATCAGCTAAAAATCAGTGCGCTACATTGACGCTAGATAAGATC
ATACGCGCCGGGCTTGTCGCACCTGGATCGCgcgttcaaaaattttcgca
CACTTTTAAAGATAAGACTTGTGATGAGTGTGGAGTAAAGgagaaaaatg
acgtcaaattcaaagtcaaaaattacgAAGTGGTTTTCACGGTGTtacca
agccatggaaaatatGAAGCAACTGCAGTGCTGGATATTTCGAGCGGGAA
ATTCACAGCCAGTGACGCTATTAGCCGAATCAATATGTATGCAAATCAAC
CGCATTGTGTTATGAAAGAATTTCCTCATTTAAGACCTTTTTGCTACTGT
AAAAAACAATTAGACTCTTAACTTTactttttattagaattttaaCGCTT
TATTGTATCAGCCCATAGAAGGCAGCCCACGAGCGTCGAAAAAGACAGTT
TTTTTGGTTTCACCTGAGCGGGCCACCTTCTTAAGGCAATACATTtagat
aaaataaataaataattgcTAAAATCAGGAGATTTACTCCTGtaaaccaa
aaatgaagtttttagcATTAAGGGACAAaaggttttcttcttcttcattt
cttaaaatcttactatactaaaagagtttatgaaaaatttctgtaATGCT
AGCCCATAATTAAGAGACATCTCCGTCTATCACGGGCTTCACATAGCCGT
AAGAGTATACAGATATAGGTAATCTATGGCGTAAAGAATGTAAGtttgaa
aattagcgttttgaggGAGAAACCGTTGCAGTgtaaatctttcgcaaatt
taaaa

Coding sequence (CDS) from alignment at sc0002453:3236..9040+

>TCONS_00040520 ID=TCONS_00040520|Name=TCONS_00040520|organism=Clytia hemisphaerica|type=CDS|length=8505bp|location=Sequence derived from alignment at sc0002453:3236..9040+ (Clytia hemisphaerica)
AAGACGCTCTCTCCAATTTTTCCGAGAAATAATCCAATATCATGTTATTT
GGAACGATGTCCATTTAGAAGAGAAATTTATGAAGAAGATACAacaaaac
tatttcaaattcTTCTCAATAAAAGTCTTCAACCAAATACTTTCAGTTGC
TTAAAAGTTGCTcatatttcttttatagaaaTCAGGTTGAAAGAAGATTT
CATTCAAGTTTCAATCACCACAGTTAGCAAACAAACTCATGATGAATTCC
ACGCTTACCCGGTTCGAAAAGACATCCGCGGGGGAACACCGCTACCTCCA
AAAGCGGATCGATTAAACATTGTCTTTCTGATGGTCGATTCTACATCGCA
CTCCTCCGCAGAGAGATATTTGAAAAAGACGATGAAGAAGATGAAAGAAA
GTCAGAGCACAGTTATCTTAAATggTCACAATATTGTAGGGGATGGGACC
ACAGCACAAAACTGCGCCATCTTTGCAGGAGAGTTAGAGGATAAACTACC
GGAAGCGAGGCGAGGCCACAAAAAAGCAGATTACGTTGACCGGTGGCCAT
TTCTATGGCAGGATTTCAAGAAGGCAGGCTACACCACTCTCTATTCTGAA
GACGGCCCGCCTGTGAGCAACACCTTTAACTACCGTTTAAAAGGGTTTAA
TGAACCTCCGACCGACCGCTATCTAAGAAATTTCTGGGTTGCTGGAAAAA
CATTTATcaataaattgaataaagaaaACTCCAAATGCAGTTTTCAAATT
AATCACAGATATTTCAAGCAATTTATGACAAACTTTCACGACAAGTTAAA
ATTCGCATACGTTGTTTCCGACCTTCCACacaaccaatcgccgaaagttc
AACTTGTCGATGATGATTTTCTCGAAGTTTTggaattttttgagaaatct
gGTCATTATGAAAACACACTTTTGATCGTCTTCGGAGACCATGGTGATCG
GACTGGCGATTACCGGGCTACCATGACCGGGAAATTAGAAGAGAGACTCC
CTTTTATGTCTTTTACATTACCACCCTGGTTTCCGGAGCAATTTCCGGAC
CAATTCAGGAACCTACAACGGAACGCAAACTTGCTGACATCACATTTCGA
TGTTTACGCAACGTTACGTCATCTAATGACTTTTCCAGACGTCAAACATA
AACATAAATACGGAAGTAGCCTATTTACTGATCTCTCTCCtctcaatcga
acttgtcgcgAGATCGGAGTTTTAGATCACTGGTGTTCTTGTCTAGATTA
CGAAGAGATAAAGACAAGCGACCAGATGGCTTTGAGAGCAGCGGAAGCCA
TCATTAAAACAATCAACGAGAAAAACGCTAAAATCGAATCAGCTAAAAAT
CAGTGCGCTACATTGACGCTAGATAAGATCATACGCGCCGGGCTTGTCGC
ACCTGGATCGCgcgttcaaaaattttcgcaCACTTTTAAAGATAAGACTT
GTGATGAGTGTGGAGTAAAGgagaaaaatgacgtcaaattcaaagtcaaa
aattacgAAGTGGTTTTCACGGTGTtaccaagccatggaaaatatGAAGC
AACTGCAGTGCTGGATATTTCGAGCGGGAAATTCACAGCCAGTGACGCTA
TTAGCCGAATCAATATGTATGCAAATCAACCGCATTGTGTTATGAAAGAA
TTTCCTCATTTAAGACCTTTTTGCTACTGTAAAAAACAATTAGACTCTTA
AAAGACGCTCTCTCCAATTTTTCCGAGAAATAATCCAATATCATGTTATT
TGGAACGATGTCCATTTAGAAGAGAAATTTATGAAGAAGATACAacaaaa
ctatttcaaattcTTCTCAATAAAAGTCTTCAACCAAATACTTTCAGTTG
CTTAAAAGTTGCTcatatttcttttatagaaaTCAGGTTGAAAGAAGATT
TCATTCAAGTTTCAATCACCACAGTTAGCAAACAAACTCATGATGAATTC
CACGCTTACCCGGTTCGAAAAGACATCCGCGGGGGAACACCGCTACCTCC
AAAAGCGGATCGATTAAACATTGTCTTTCTGATGGTCGATTCTACATCGC
ACTCCTCCGCAGAGAGATATTTGAAAAAGACGATGAAGAAGATGAAAGAA
AGTCAGAGCACAGTTATCTTAAATggTCACAATATTGTAGGGGATGGGAC
CACAGCACAAAACTGCGCCATCTTTGCAGGAGAGTTAGAGGATAAACTAC
CGGAAGCGAGGCGAGGCCACAAAAAAGCAGATTACGTTGACCGGTGGCCA
TTTCTATGGCAGGATTTCAAGAAGGCAGGCTACACCACTCTCTATTCTGA
AGACGGCCCGCCTGTGAGCAACACCTTTAACTACCGTTTAAAAGGGTTTA
ATGAACCTCCGACCGACCGCTATCTAAGAAATTTCTGGGTTGCTGGAAAA
ACATTTATcaataaattgaataaagaaaACTCCAAATGCAGTTTTCAAAT
TAATCACAGATATTTCAAGCAATTTATGACAAACTTTCACGACAAGTTAA
AATTCGCATACGTTGTTTCCGACCTTCCACacaaccaatcgccgaaagtt
cAACTTGTCGATGATGATTTTCTCGAAGTTTTggaattttttgagaaatc
tgGTCATTATGAAAACACACTTTTGATCGTCTTCGGAGACCATGGTGATC
GGACTGGCGATTACCGGGCTACCATGACCGGGAAATTAGAAGAGAGACTC
CCTTTTATGTCTTTTACATTACCACCCTGGTTTCCGGAGCAATTTCCGGA
CCAATTCAGGAACCTACAACGGAACGCAAACTTGCTGACATCACATTTCG
ATGTTTACGCAACGTTACGTCATCTAATGACTTTTCCAGACGTCAAACAT
AAACATAAATACGGAAGTAGCCTATTTACTGATCTCTCTCCtctcaatcg
aacttgtcgcgAGATCGGAGTTTTAGATCACTGGTGTTCTTGTCTAGATT
ACGAAGAGATAAAGACAAGCGACCAGATGGCTTTGAGAGCAGCGGAAGCC
ATCATTAAAACAATCAACGAGAAAAACGCTAAAATCGAATCAGCTAAAAA
TCAGTGCGCTACATTGACGCTAGATAAGATCATACGCGCCGGGCTTGTCG
CACCTGGATCGCgcgttcaaaaattttcgcaCACTTTTAAAGATAAGACT
TGTGATGAGTGTGGAGTAAAGgagaaaaatgacgtcaaattcaaagtcaa
aaattacgAAGTGGTTTTCACGGTGTtaccaagccatggaaaatatGAAG
CAACTGCAGTGCTGGATATTTCGAGCGGGAAATTCACAGCCAGTGACGCT
ATTAGCCGAATCAATATGTATGCAAATCAACCGCATTGTGTTATGAAAGA
ATTTCCTCATTTAAGACCTTTTTGCTACTGTAAAAAACAATTAGACTCTT
AAAAGACGCTCTCTCCAATTTTTCCGAGAAATAATCCAATATCATGTTAT
TTGGAACGATGTCCATTTAGAAGAGAAATTTATGAAGAAGATACAacaaa
actatttcaaattcTTCTCAATAAAAGTCTTCAACCAAATACTTTCAGTT
GCTTAAAAGTTGCTcatatttcttttatagaaaTCAGGTTGAAAGAAGAT
TTCATTCAAGTTTCAATCACCACAGTTAGCAAACAAACTCATGATGAATT
CCACGCTTACCCGGTTCGAAAAGACATCCGCGGGGGAACACCGCTACCTC
CAAAAGCGGATCGATTAAACATTGTCTTTCTGATGGTCGATTCTACATCG
CACTCCTCCGCAGAGAGATATTTGAAAAAGACGATGAAGAAGATGAAAGA
AAGTCAGAGCACAGTTATCTTAAATggTCACAATATTGTAGGGGATGGGA
CCACAGCACAAAACTGCGCCATCTTTGCAGGAGAGTTAGAGGATAAACTA
CCGGAAGCGAGGCGAGGCCACAAAAAAGCAGATTACGTTGACCGGTGGCC
ATTTCTATGGCAGGATTTCAAGAAGGCAGGCTACACCACTCTCTATTCTG
AAGACGGCCCGCCTGTGAGCAACACCTTTAACTACCGTTTAAAAGGGTTT
AATGAACCTCCGACCGACCGCTATCTAAGAAATTTCTGGGTTGCTGGAAA
AACATTTATcaataaattgaataaagaaaACTCCAAATGCAGTTTTCAAA
TTAATCACAGATATTTCAAGCAATTTATGACAAACTTTCACGACAAGTTA
AAATTCGCATACGTTGTTTCCGACCTTCCACacaaccaatcgccgaaagt
tcAACTTGTCGATGATGATTTTCTCGAAGTTTTggaattttttgagaaat
ctgGTCATTATGAAAACACACTTTTGATCGTCTTCGGAGACCATGGTGAT
CGGACTGGCGATTACCGGGCTACCATGACCGGGAAATTAGAAGAGAGACT
CCCTTTTATGTCTTTTACATTACCACCCTGGTTTCCGGAGCAATTTCCGG
ACCAATTCAGGAACCTACAACGGAACGCAAACTTGCTGACATCACATTTC
GATGTTTACGCAACGTTACGTCATCTAATGACTTTTCCAGACGTCAAACA
TAAACATAAATACGGAAGTAGCCTATTTACTGATCTCTCTCCtctcaatc
gaacttgtcgcgAGATCGGAGTTTTAGATCACTGGTGTTCTTGTCTAGAT
TACGAAGAGATAAAGACAAGCGACCAGATGGCTTTGAGAGCAGCGGAAGC
CATCATTAAAACAATCAACGAGAAAAACGCTAAAATCGAATCAGCTAAAA
ATCAGTGCGCTACATTGACGCTAGATAAGATCATACGCGCCGGGCTTGTC
GCACCTGGATCGCgcgttcaaaaattttcgcaCACTTTTAAAGATAAGAC
TTGTGATGAGTGTGGAGTAAAGgagaaaaatgacgtcaaattcaaagtca
aaaattacgAAGTGGTTTTCACGGTGTtaccaagccatggaaaatatGAA
GCAACTGCAGTGCTGGATATTTCGAGCGGGAAATTCACAGCCAGTGACGC
TATTAGCCGAATCAATATGTATGCAAATCAACCGCATTGTGTTATGAAAG
AATTTCCTCATTTAAGACCTTTTTGCTACTGTAAAAAACAATTAGACTCT
TAAAAGACGCTCTCTCCAATTTTTCCGAGAAATAATCCAATATCATGTTA
TTTGGAACGATGTCCATTTAGAAGAGAAATTTATGAAGAAGATACAacaa
aactatttcaaattcTTCTCAATAAAAGTCTTCAACCAAATACTTTCAGT
TGCTTAAAAGTTGCTcatatttcttttatagaaaTCAGGTTGAAAGAAGA
TTTCATTCAAGTTTCAATCACCACAGTTAGCAAACAAACTCATGATGAAT
TCCACGCTTACCCGGTTCGAAAAGACATCCGCGGGGGAACACCGCTACCT
CCAAAAGCGGATCGATTAAACATTGTCTTTCTGATGGTCGATTCTACATC
GCACTCCTCCGCAGAGAGATATTTGAAAAAGACGATGAAGAAGATGAAAG
AAAGTCAGAGCACAGTTATCTTAAATggTCACAATATTGTAGGGGATGGG
ACCACAGCACAAAACTGCGCCATCTTTGCAGGAGAGTTAGAGGATAAACT
ACCGGAAGCGAGGCGAGGCCACAAAAAAGCAGATTACGTTGACCGGTGGC
CATTTCTATGGCAGGATTTCAAGAAGGCAGGCTACACCACTCTCTATTCT
GAAGACGGCCCGCCTGTGAGCAACACCTTTAACTACCGTTTAAAAGGGTT
TAATGAACCTCCGACCGACCGCTATCTAAGAAATTTCTGGGTTGCTGGAA
AAACATTTATcaataaattgaataaagaaaACTCCAAATGCAGTTTTCAA
ATTAATCACAGATATTTCAAGCAATTTATGACAAACTTTCACGACAAGTT
AAAATTCGCATACGTTGTTTCCGACCTTCCACacaaccaatcgccgaaag
ttcAACTTGTCGATGATGATTTTCTCGAAGTTTTggaattttttgagaaa
tctgGTCATTATGAAAACACACTTTTGATCGTCTTCGGAGACCATGGTGA
TCGGACTGGCGATTACCGGGCTACCATGACCGGGAAATTAGAAGAGAGAC
TCCCTTTTATGTCTTTTACATTACCACCCTGGTTTCCGGAGCAATTTCCG
GACCAATTCAGGAACCTACAACGGAACGCAAACTTGCTGACATCACATTT
CGATGTTTACGCAACGTTACGTCATCTAATGACTTTTCCAGACGTCAAAC
ATAAACATAAATACGGAAGTAGCCTATTTACTGATCTCTCTCCtctcaat
cgaacttgtcgcgAGATCGGAGTTTTAGATCACTGGTGTTCTTGTCTAGA
TTACGAAGAGATAAAGACAAGCGACCAGATGGCTTTGAGAGCAGCGGAAG
CCATCATTAAAACAATCAACGAGAAAAACGCTAAAATCGAATCAGCTAAA
AATCAGTGCGCTACATTGACGCTAGATAAGATCATACGCGCCGGGCTTGT
CGCACCTGGATCGCgcgttcaaaaattttcgcaCACTTTTAAAGATAAGA
CTTGTGATGAGTGTGGAGTAAAGgagaaaaatgacgtcaaattcaaagtc
aaaaattacgAAGTGGTTTTCACGGTGTtaccaagccatggaaaatatGA
AGCAACTGCAGTGCTGGATATTTCGAGCGGGAAATTCACAGCCAGTGACG
CTATTAGCCGAATCAATATGTATGCAAATCAACCGCATTGTGTTATGAAA
GAATTTCCTCATTTAAGACCTTTTTGCTACTGTAAAAAACAATTAGACTC
TTAAAAGACGCTCTCTCCAATTTTTCCGAGAAATAATCCAATATCATGTT
ATTTGGAACGATGTCCATTTAGAAGAGAAATTTATGAAGAAGATACAaca
aaactatttcaaattcTTCTCAATAAAAGTCTTCAACCAAATACTTTCAG
TTGCTTAAAAGTTGCTcatatttcttttatagaaaTCAGGTTGAAAGAAG
ATTTCATTCAAGTTTCAATCACCACAGTTAGCAAACAAACTCATGATGAA
TTCCACGCTTACCCGGTTCGAAAAGACATCCGCGGGGGAACACCGCTACC
TCCAAAAGCGGATCGATTAAACATTGTCTTTCTGATGGTCGATTCTACAT
CGCACTCCTCCGCAGAGAGATATTTGAAAAAGACGATGAAGAAGATGAAA
GAAAGTCAGAGCACAGTTATCTTAAATggTCACAATATTGTAGGGGATGG
GACCACAGCACAAAACTGCGCCATCTTTGCAGGAGAGTTAGAGGATAAAC
TACCGGAAGCGAGGCGAGGCCACAAAAAAGCAGATTACGTTGACCGGTGG
CCATTTCTATGGCAGGATTTCAAGAAGGCAGGCTACACCACTCTCTATTC
TGAAGACGGCCCGCCTGTGAGCAACACCTTTAACTACCGTTTAAAAGGGT
TTAATGAACCTCCGACCGACCGCTATCTAAGAAATTTCTGGGTTGCTGGA
AAAACATTTATcaataaattgaataaagaaaACTCCAAATGCAGTTTTCA
AATTAATCACAGATATTTCAAGCAATTTATGACAAACTTTCACGACAAGT
TAAAATTCGCATACGTTGTTTCCGACCTTCCACacaaccaatcgccgaaa
gttcAACTTGTCGATGATGATTTTCTCGAAGTTTTggaattttttgagaa
atctgGTCATTATGAAAACACACTTTTGATCGTCTTCGGAGACCATGGTG
ATCGGACTGGCGATTACCGGGCTACCATGACCGGGAAATTAGAAGAGAGA
CTCCCTTTTATGTCTTTTACATTACCACCCTGGTTTCCGGAGCAATTTCC
GGACCAATTCAGGAACCTACAACGGAACGCAAACTTGCTGACATCACATT
TCGATGTTTACGCAACGTTACGTCATCTAATGACTTTTCCAGACGTCAAA
CATAAACATAAATACGGAAGTAGCCTATTTACTGATCTCTCTCCtctcaa
tcgaacttgtcgcgAGATCGGAGTTTTAGATCACTGGTGTTCTTGTCTAG
ATTACGAAGAGATAAAGACAAGCGACCAGATGGCTTTGAGAGCAGCGGAA
GCCATCATTAAAACAATCAACGAGAAAAACGCTAAAATCGAATCAGCTAA
AAATCAGTGCGCTACATTGACGCTAGATAAGATCATACGCGCCGGGCTTG
TCGCACCTGGATCGCgcgttcaaaaattttcgcaCACTTTTAAAGATAAG
ACTTGTGATGAGTGTGGAGTAAAGgagaaaaatgacgtcaaattcaaagt
caaaaattacgAAGTGGTTTTCACGGTGTtaccaagccatggaaaatatG
AAGCAACTGCAGTGCTGGATATTTCGAGCGGGAAATTCACAGCCAGTGAC
GCTATTAGCCGAATCAATATGTATGCAAATCAACCGCATTGTGTTATGAA
AGAATTTCCTCATTTAAGACCTTTTTGCTACTGTAAAAAACAATTAGACT
CTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024647XLOC_024647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040520-exon-sc0002453-1491911889:3236..3659TCONS_00040520-exon-sc0002453-1491911889:3236..3659Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1510915933:3236..3659TCONS_00040520-exon-sc0002453-1510915933:3236..3659Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1575043694:3236..3659TCONS_00040520-exon-sc0002453-1575043694:3236..3659Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1491911889:4433..4538TCONS_00040520-exon-sc0002453-1491911889:4433..4538Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1510915933:4433..4538TCONS_00040520-exon-sc0002453-1510915933:4433..4538Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1575043694:4433..4538TCONS_00040520-exon-sc0002453-1575043694:4433..4538Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1491911889:5434..5477TCONS_00040520-exon-sc0002453-1491911889:5434..5477Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1510915933:5434..5477TCONS_00040520-exon-sc0002453-1510915933:5434..5477Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1575043694:5434..5477TCONS_00040520-exon-sc0002453-1575043694:5434..5477Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1491911889:6816..7000TCONS_00040520-exon-sc0002453-1491911889:6816..7000Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1510915933:6816..7000TCONS_00040520-exon-sc0002453-1510915933:6816..7000Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1575043694:6816..7000TCONS_00040520-exon-sc0002453-1575043694:6816..7000Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1491911889:7664..9040TCONS_00040520-exon-sc0002453-1491911889:7664..9040Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1510915933:7664..9040TCONS_00040520-exon-sc0002453-1510915933:7664..9040Clytia hemisphaericaexon
TCONS_00040520-exon-sc0002453-1575043694:7664..9040TCONS_00040520-exon-sc0002453-1575043694:7664..9040Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040520-proteinTCONS_00040520-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002453supercontigsc0002453:3236..9040 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0184109	0	0.104229	0.122366	0.769671	0.843638	2.43802	2.37108	3.13393	2.42137	2.70464	2.03541	0.48978	0.396505	0.135906	0.15762	0.165852	0.184159	1.31127	1.67934	0.284811	0.234429	0.253314	0.268683	0.158135	0.211698	0	0.0269421	0.0408693	0.062459
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017849Alkaline_Pase-like_a/b/a
IPR004245DUF229
IPR017850Alkaline_phosphatase_core
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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