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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040510 ID=TCONS_00040510|Name=TCONS_00040510|organism=Clytia hemisphaerica|type=transcript|length=2728bp
CCGACGCccaattttcaaagattgttaaAAGCAAGCCATTTGATGGTAAT
TTGAGGACCTTTTCCTCCCTTCAAACCAAAATCGTCGCTCCGTTGTCGTC
GTCGTTGTCCGGCGAAATCTTTTCTCCGTCGTCGTTGTCCGGCGAAATCG
TTTCTCCACCGTCGTCGTCCGACGAAATCGTTGCtccgtcgtcgtcgtcg
tccgGCGAAATCGTTGTTCCGTCGGCATCATCCGGCGAAATCGTTGTTTC
GTCGTCGTCCGgcaaaatcaataaaatcgtTGTTCCGTCGGCATCATCCG
GCGAAATTGTCGTCTCGTCGTCGTCcggcaaaatcaacaaaatcgttGTT
CCGTCGTCATCATCCGGCGAAACCGTCGTCTCGTCGTCGTCcggcaaaat
caacaaaatcgttGTTCCGTCGGCATCATCCGTTTCGTCGTCGTCcggca
aaatcaacaaaatcgttGTTCCGTCGGCATCATCCGTTTCGTCGTCGTCc
ggcaaaatcaacaaaatcgttGTTCCGTCGGCATCATCCGGCGAAATCGT
CGTCTCGTCGTCGTCcagcaaaatcaacaaaatcgttGTTCCGTCGGCAT
CATCCGTTTCGTCGTCGTCcggcaaaatcaacaaaatcgttGTTCCGTCG
GCCTTATCCGGCGAAATCGGTGTTTCGCTGTCGTCTGGTTCCGCCAATGT
TCTGCCGTCCGGTTCCTCTAATGTTCTGTTGCCTGGTTTTGTTGTTCCTT
TGTCTGCCAACACTCCAGTTTATTCAACGAACGCTTCAACCCCACGCCAA
CAATACACCACACCAAGTAGTTGTTCCTCTCGCATGTCTTTCACTCCGGA
GTCAACGGATTATGTTGTTTCTTCTAGAAGTGGTGGTCGTTTTCTTCAAC
AATCTAAAGATCAAAAAAGCACACGTGAGAAGATCNTCTTCAAGAAGTGG
TGGTCGTTTTCTTCAACAATCCAAAGATCAAAAAAGCACACGTGAGAAGA
TCGATGAACTTTCTTTGGAGTTGGTTAGAATGCGTGGGGTGATGGAGCAA
CAGGCAAAGGACATCAACACAATAATGACCATATTGAAAGAAATTACCAA
CCGCCAACCACCAATGCCAGTTCTTCATCATAGTGAGAGCCACTATGTTC
TGAAAGCATCCTTCGTGTGCACagagttgttaaaagcaaactaacttttc
tGAATTATCAATTAGGTCTATAAGATCACAAAAgcgagtggtgagaaaaa
ttttgaccattttgctggtccccatgtgacgtcatcacttttggtggggc
ttgaaaatgaaagtgaaaattagaagctcatgtatggctcaaatgaaaga
tatttatccaaggattccaaaaaatatcataacatatacctgaaaatcaa
tatttaagAAGCCataaaggaaaatagcttgaaatatgacgtcatcgatg
acgtcatcgacaataaaaaaatcgtcaaaatcgaaaaatttttgtttctt
ttgaaagaggaccatctagtgaacaaaaaatattgctacaaaaaatctga
atttcTCCTTATAAGCCCCTGTCAGCAAATTTGTAGTTCATTAAACTCGC
CTGTGAAAGGTTAGCTTCGGGCACGCCCAGGAATCTTTAAAAAGCTTGAG
AATCAAGTCAAACGCATTTCACAGAATAATTTCCTATCAAATGAAATTCA
AGGTTTTccgtagtaatattttttgttcccaagcaggtcctctttcaaat
gaaacaaaaatttttcgatttcgacgattttttaattgccgatgacgtca
tcgatgacgtcattttttgagctattttcctttatagcttctgaaatttg
attttcaggtatatgttatgatattttttggaatccttggatagatatct
ttcatttgagccatatatgagcttctaattttcactttcattttcaagcc
ctagcaaaagtgatgacgtcacatggggaccagcaaaatggtcaaaattt
ttctcaccactcctttttgtgatcttatagacctaattgatcatttaaaa
aagttagtttgcttttaacaactctgtgcacacgaagaacATTGTAGCTC
TCACTATCACCATGAGGTTGAAAATGAGctggaaaatattgaaaaagtaa
TTGAGGATACCAGACCAAACCTTTTCTTGCCTGGCGGTTACATGGAGGAA
CTCTTGGGGAATGGGACAACCAACAGTTCAAAGTCGGAGGTTACAACTGA
AGAAACAGAGGCAATTGCCAAATCCGCCATCGAAACTATGAAGAGTAAAT
TCAGCCCGCAAGAACTAAAATACGGGAACATAAAAGGCACCGCCAGGATG
AAGAAACTAAATGAggaatatttattgttctattCGAGAAAAATTCATCC
TCCGCCCTGATTTTGAGTTCCTGGGACCCATTGAAACTAGAATTGGGATA
AAATTGAATGCCCATAGGAAGAATATCAAATTATTAACACCGGAAATTCC
AAGTCAAAGCGCCAGCTCTTAAATCATATGGTGACTCAGTGATTGATCCA
TTCTCTTAAATTATTCATCAGATTTTATTCACTACATAAATTGAATGCcc
ataaattaaaaataaattctcaTGGATCAACGCAAAACACCATATGCTTA
AGTTCTGAGGCTATTTCTtaggaattttttatcaataatttaCTGATCAT
TGTaacctcattatttttttaaactatt Run BLAST on NCBI transcript from alignment at sc0002447:17244..19971+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040510 ID=TCONS_00040510|Name=TCONS_00040510|organism=Clytia hemisphaerica|type=transcript|length=2728bp|location=Sequence derived from alignment at sc0002447:17244..19971+ (Clytia hemisphaerica)
CCGACGCccaattttcaaagattgttaaAAGCAAGCCATTTGATGGTAAT
TTGAGGACCTTTTCCTCCCTTCAAACCAAAATCGTCGCTCCGTTGTCGTC
GTCGTTGTCCGGCGAAATCTTTTCTCCGTCGTCGTTGTCCGGCGAAATCG
TTTCTCCACCGTCGTCGTCCGACGAAATCGTTGCtccgtcgtcgtcgtcg
tccgGCGAAATCGTTGTTCCGTCGGCATCATCCGGCGAAATCGTTGTTTC
GTCGTCGTCCGgcaaaatcaataaaatcgtTGTTCCGTCGGCATCATCCG
GCGAAATTGTCGTCTCGTCGTCGTCcggcaaaatcaacaaaatcgttGTT
CCGTCGTCATCATCCGGCGAAACCGTCGTCTCGTCGTCGTCcggcaaaat
caacaaaatcgttGTTCCGTCGGCATCATCCGTTTCGTCGTCGTCcggca
aaatcaacaaaatcgttGTTCCGTCGGCATCATCCGTTTCGTCGTCGTCc
ggcaaaatcaacaaaatcgttGTTCCGTCGGCATCATCCGGCGAAATCGT
CGTCTCGTCGTCGTCcagcaaaatcaacaaaatcgttGTTCCGTCGGCAT
CATCCGTTTCGTCGTCGTCcggcaaaatcaacaaaatcgttGTTCCGTCG
GCCTTATCCGGCGAAATCGGTGTTTCGCTGTCGTCTGGTTCCGCCAATGT
TCTGCCGTCCGGTTCCTCTAATGTTCTGTTGCCTGGTTTTGTTGTTCCTT
TGTCTGCCAACACTCCAGTTTATTCAACGAACGCTTCAACCCCACGCCAA
CAATACACCACACCAAGTAGTTGTTCCTCTCGCATGTCTTTCACTCCGGA
GTCAACGGATTATGTTGTTTCTTCTAGAAGTGGTGGTCGTTTTCTTCAAC
AATCTAAAGATCAAAAAAGCACACGTGAGAAGATCNTCTTCAAGAAGTGG
TGGTCGTTTTCTTCAACAATCCAAAGATCAAAAAAGCACACGTGAGAAGA
TCGATGAACTTTCTTTGGAGTTGGTTAGAATGCGTGGGGTGATGGAGCAA
CAGGCAAAGGACATCAACACAATAATGACCATATTGAAAGAAATTACCAA
CCGCCAACCACCAATGCCAGTTCTTCATCATAGTGAGAGCCACTATGTTC
TGAAAGCATCCTTCGTGTGCACagagttgttaaaagcaaactaacttttc
tGAATTATCAATTAGGTCTATAAGATCACAAAAgcgagtggtgagaaaaa
ttttgaccattttgctggtccccatgtgacgtcatcacttttggtggggc
ttgaaaatgaaagtgaaaattagaagctcatgtatggctcaaatgaaaga
tatttatccaaggattccaaaaaatatcataacatatacctgaaaatcaa
tatttaagAAGCCataaaggaaaatagcttgaaatatgacgtcatcgatg
acgtcatcgacaataaaaaaatcgtcaaaatcgaaaaatttttgtttctt
ttgaaagaggaccatctagtgaacaaaaaatattgctacaaaaaatctga
atttcTCCTTATAAGCCCCTGTCAGCAAATTTGTAGTTCATTAAACTCGC
CTGTGAAAGGTTAGCTTCGGGCACGCCCAGGAATCTTTAAAAAGCTTGAG
AATCAAGTCAAACGCATTTCACAGAATAATTTCCTATCAAATGAAATTCA
AGGTTTTccgtagtaatattttttgttcccaagcaggtcctctttcaaat
gaaacaaaaatttttcgatttcgacgattttttaattgccgatgacgtca
tcgatgacgtcattttttgagctattttcctttatagcttctgaaatttg
attttcaggtatatgttatgatattttttggaatccttggatagatatct
ttcatttgagccatatatgagcttctaattttcactttcattttcaagcc
ctagcaaaagtgatgacgtcacatggggaccagcaaaatggtcaaaattt
ttctcaccactcctttttgtgatcttatagacctaattgatcatttaaaa
aagttagtttgcttttaacaactctgtgcacacgaagaacATTGTAGCTC
TCACTATCACCATGAGGTTGAAAATGAGctggaaaatattgaaaaagtaa
TTGAGGATACCAGACCAAACCTTTTCTTGCCTGGCGGTTACATGGAGGAA
CTCTTGGGGAATGGGACAACCAACAGTTCAAAGTCGGAGGTTACAACTGA
AGAAACAGAGGCAATTGCCAAATCCGCCATCGAAACTATGAAGAGTAAAT
TCAGCCCGCAAGAACTAAAATACGGGAACATAAAAGGCACCGCCAGGATG
AAGAAACTAAATGAggaatatttattgttctattCGAGAAAAATTCATCC
TCCGCCCTGATTTTGAGTTCCTGGGACCCATTGAAACTAGAATTGGGATA
AAATTGAATGCCCATAGGAAGAATATCAAATTATTAACACCGGAAATTCC
AAGTCAAAGCGCCAGCTCTTAAATCATATGGTGACTCAGTGATTGATCCA
TTCTCTTAAATTATTCATCAGATTTTATTCACTACATAAATTGAATGCcc
ataaattaaaaataaattctcaTGGATCAACGCAAAACACCATATGCTTA
AGTTCTGAGGCTATTTCTtaggaattttttatcaataatttaCTGATCAT
TGTaacctcattatttttttaaactatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040510-exon-sc0002447-1491911889:17244..19971 | TCONS_00040510-exon-sc0002447-1491911889:17244..19971 | Clytia hemisphaerica | exon |
| TCONS_00040510-exon-sc0002447-1510915933:17244..19971 | TCONS_00040510-exon-sc0002447-1510915933:17244..19971 | Clytia hemisphaerica | exon |
| TCONS_00040510-exon-sc0002447-1575043694:17244..19971 | TCONS_00040510-exon-sc0002447-1575043694:17244..19971 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002447 | supercontig | sc0002447:17244..19971 + |
Blast
The following BLAST results are available for this feature:
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