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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040509 ID=TCONS_00040509|Name=TCONS_00040509|organism=Clytia hemisphaerica|type=transcript|length=979bp
TTAGAAATGGTTGCAATTTATTAAAGTTAGAGCGCAGAGGATACGATTAA
TAAACAAATGATCAAAATAAAACTTGCCCAGTAAATCTAGTGTCTGTAGT
AGTTCCATGACAAACTTGACTGAGTCTGAATCACACCTATTGTTAATTGG
AATAAAAATTAGTTAGATAAAAATTGATAAGGTTGTCAAAAGGTAGAAAA
AATTGCTTAACCATATCCACAACACTGAAGTAAAATTGAACTTTATTTAG
CTTGTCCATCACGACATTGTTCTTCCAAAATTTAATACCAGCCAAGATGA
CAACATGTCCAAATTTATTCTTTAACCTgtaaaaagaatataaaaatcAT
TAGAAGATGAGCCATTTATGTCTCccaaaaactctcaaaacgaagaGAAA
TCTACACAACTCAGGAACTACCAAAGCTTTTAGAATTCACCAGTTACAGT
ACCATCTCAGACAGTGCAATCAATTTCAATTCCCTCACCTGTTGGTAGTA
TTTTATGAATTAGACTGTATTGTACTGACATTGTCCACACAGAGAAATGG
GATGGAATAGAAAACAATCTTTGATTAGGGTTGGAAGTTCATAAAAAGAC
GGCTCTTCCTAAAAATTGGATCATACAAGTGGATTTACGTTTATCCTTTT
TGACGGATTACTATCCAAACTTGCTTTTAatgtaaaaaattttaacataa
ATAGCTGGTTGAGCTTcgggaaaaaatattcttactttCTTGCAGTTATA
TCATAGGAAATGCTGTATAACGGTTAGCTCTGTAAAATTGCGTCAAAAtt
gtttttcgtcaaaaaacatacaaaacaTCCAGTGGATCCCTTAAAAAATT
CTCTCTGCTATTTTATTTTGTGGGTGtttctcgcaaaattaagtACACCA
TAAAATTTTAGTAGTTGAGCACTAGGCAATCTGCTTTTCCAAGTCCAtca
caggggggggggggggacgaaAAATTGAG Run BLAST on NCBI transcript from alignment at sc0002447:86..3380+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040509 ID=TCONS_00040509|Name=TCONS_00040509|organism=Clytia hemisphaerica|type=transcript|length=3295bp|location=Sequence derived from alignment at sc0002447:86..3380+ (Clytia hemisphaerica)
TTAGAAATGGTTGCAATTTATTAAAGTTAGAGCGCAGAGGATACGATTAA
TAAACAAATGATCAAAATAAAACTTGCCCAGTAAATCTAGTGTCTGTAGT
AGTTCCATGACAAACTTGACTGAGTCTGAATCACACCTATTGTTAATTGG
AATAAAAATTAGTTAGATAAAAATTGATAAGGTTGTCAAAAGGTAGAAAA
AATTGCTTAACCATATCCACAACACTGAAGTAAAATTGAACTTTATTTAG
CTTGTCCATCACGACATCGTTCTTCCAAAATTTAATACCAGCCAAGATGA
CAACATGTCCAAATTTATTCTTTAACCTgtaaaaagaatataaaaatcAT
TAGAAGATGAGCCATTTATGTCTCccaaaaactctcaaaacgaagaGAAA
TCTACACAACTCAGTAACTACCAAAGCTTTAGAATTCACCAGTTACAGTA
CCATCTCAGACAGTGCAATCAATTTCAATTCCCTCACCTGTTGGTAGTAT
TTTATGAATTACACTGTATTGTACTGACATTGTCCACACAGAGAAATGGG
ATGgaatagaaaaaaatctttgattaGGGTTGGATGTTCATAAAAAGACG
GCTCTTCCTAAAAATTGGATCATAAAAGTGGATTTACGTTTATTCTTTTT
CACGGATTACTATCCAAACTTGCTTTTaatgtaaaaaattttaaaaacat
aaatagcTGGTTGAGCTtcgggaaaaaaaattcttacttTCTCGCAGTTA
TATGATAGGAAATGCTGTATAACGGTTAGCTCTGTAAAATTGGGTCAAAA
ttgtttttcgtcaaaaaacatacaaaacaTCCAGTGGATCCCTTAAAAAA
TTCTCTCTGCTATTTTATTTTGTGGgtgtttctggcaaaactaagtACAC
CATAAAATTTTAGTAGTTGAGCACTAGGCAATCTGCTTTTCCAAGTCCAT
CACAGGGGGGGGGTGGTTGAAAAATTGAgaggcaaaatatttttttctaa
ttcctggattttcaatacaaaaacaattgaaaaatcctggatttctaata
caaaatcaaatttttggtggaaaaatctctttattcaaaattttaaaaat
tgtagAATTTCCAAGCACTTTTAAAATTAACTGGATTTCCAAGTGCTcct
tttatctgaaaattcctGTCGTCCATCCCCTgctatacaatttttttctg
gaagagcccaatttctTTTTGTGGCGTTCCAAAAAAAACCCTttcccccc
cggggggggggggggttgaaaaattgagaggcaaaatatttttttctaat
tcctggattttcaatacaaaaacaattgaaaaatcctggattttcgaaac
atttttcaaatttctcaggatttccaattgaaaaaaaaatccaaaaaacc
ctttccccccccccccccggggacccaaagcttttttggatttttttttc
atttggaaattctgagaaatttgaaaaatgttttggaAAATCCAGGATTT
TTTCTCGTTATTTAGTCATATGTAtcggaaaatccataaaattggCTCCA
TTTTCTTATTAAGTAttagaaaatccataaaatttgctctattttctata
tttccaagtATCTGATTTAAGtaagtgttttttacacttttggcaaaaac
gtgaaaactaattttcgtCAAAGACGGTTTTTTCAGTCTAAAATCACGAT
TCTTGAGTATTTTGGGATGAAAACTTCCAATAAGTTGCGAATTATAATTT
CAAAtctgttgaaattttttcctcGANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATtagattttgtgt
ttttctcatttgaaattGTTATATACAAATTTCAAAGTTCTAAATACGAT
TTCCTTACACCTTCATccctgaatttcgaaaaacaaaAGCAAAGAGCACT
TTTTTATTGCTTATTCCGTCACAAAAGTCAGTTAAAGctaaacataaatt
tttaaggttttatcaaaTGATTTTGAGTCCTANCTTAGTTTTTGTGCTAT
TTTGTTTTAGCCGTACAATATATGTTTATTGACGAGTACAATCCCTAATG
TCAGTTCCTGTGTGGCATTAACAGGCAATGAAAACCAAGACCAAATGGTA
CCACAAAAGGAAATGTTCAACATTAAACATAATCCAAGGGCATGCACTGA
GTAAAAATTCCAGGGTTAGAAATGGTTGCAATTTATTAAAGTTAGAGCGC
AGAGGATACGATTAATAAACAAATGATCAAAATAAAACTTGCCCAGTAAA
TCTGGTGTCTGTAGTAGTCCCATGACAAACTTGACCGAGTCTGAATCACA
CCTATTGTTAATTGGAATAAAAATTAGTTAGATAAAAATTGATAAGGTTG
TCAAAAGGTAGAAAAAATTGCTTAACCATATCCACAATACTGAAAGTAAA
ATTGAACTTTATTTAGCTTGTCCATCACGACATTGTTCTTCCAAAATTTA
ATACCAGCCAAGATGACAACATGTCCAAATTTATTCTTTAACCTgtaaaa
agaatataaaaatcATTAGAAGATGAGCCATTTATGTCTCccaaaaactc
tcaaaacgaagaGAAATCTACACAACTCAGGAACTACCAAAGCTTTTAGA
ATTCACCAGTTACAGTACCATCTCAGACAGTGCAATCAATTTCAATTCCC
TCACCTGTTGGTAGTATTTTATGAATTAGACTGTATTGTACTGACATTGT
CCACACAGAGAAATGGGATGGAATAGAAAACAATCTTTGATTAGGGTTGG
AAGTTCATAAAAAGACGGCTCTTCCTAAAAATTGGATCATACAAGTGGAT
TTACGTTTATCCTTTTTGACGGATTACTATCCAAACTTGCTTTTAatgta
aaaaattttaacataaATAGCTGGTTGAGCTTcgggaaaaaatattctta
ctttCTTGCAGTTATATCATAGGAAATGCTGTATAACGGTTAGCTCTGTA
AAATTGCGTCAAAAttgtttttcgtcaaaaaacatacaaaacaTCCAGTG
GATCCCTTAAAAAATTCTCTCTGCTATTTTATTTTGTGGGTGtttctcgc
aaaattaagtACACCATAAAATTTTAGTAGTTGAGCACTAGGCAATCTGC
TTTTCCAAGTCCAtcacaggggggggggggggacgaaAAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040509-exon-sc0002447-1491911889:86..350 | TCONS_00040509-exon-sc0002447-1491911889:86..350 | Clytia hemisphaerica | exon |
| TCONS_00040509-exon-sc0002447-1510915933:86..350 | TCONS_00040509-exon-sc0002447-1510915933:86..350 | Clytia hemisphaerica | exon |
| TCONS_00040509-exon-sc0002447-1575043694:86..350 | TCONS_00040509-exon-sc0002447-1575043694:86..350 | Clytia hemisphaerica | exon |
| TCONS_00040509-exon-sc0002447-1491911889:2667..3380 | TCONS_00040509-exon-sc0002447-1491911889:2667..3380 | Clytia hemisphaerica | exon |
| TCONS_00040509-exon-sc0002447-1510915933:2667..3380 | TCONS_00040509-exon-sc0002447-1510915933:2667..3380 | Clytia hemisphaerica | exon |
| TCONS_00040509-exon-sc0002447-1575043694:2667..3380 | TCONS_00040509-exon-sc0002447-1575043694:2667..3380 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002447 | supercontig | sc0002447:86..3380 + |
Blast
The following BLAST results are available for this feature:
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