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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040501 ID=TCONS_00040501|Name=TCONS_00040501|organism=Clytia hemisphaerica|type=transcript|length=1009bp
CTTTGATATGTCTTGCCTTGAATGCCTCTCTAAAGCCACCTTTAGCAAAG
GACTCCAAGTCGACTGCAAATTTTGTTGCAAATGGAGTATTCCATTTATT
AGTGTTAAAATCAAACTCTTCAAGCATGAGGACTTTAACCTCGTACTTAG
GAGAAAGGCACTGACCAGCTTGCAGATAATGTGCTATCGAGAAAGACTTG
GGGACCTCACATGTTTTTGGTGTTGGGGGAATTGATGGAGCTTGAAAAGT
GTTTAGTGTTTGTTGATTGGTTGTTGattgtttttcttcttcctcTACGA
TATTTGCTTCTTCTTCCTCCTCTGGACTATTTGCTTCATCATTAGGAATG
AATCTAATGTGAAGTGTCTTTTTCAGGTCAATGAGGCTTTCTTCATCTGC
AGGTGGGCCTCTCTCTCCCTCCAAAATACCACAAACTTTGCCTTCTGCTT
GACATTTGAAAGTTTTATGATTGATACAGGCAGTCTTAAGATCTGCTAAA
GATGCATTTTGGGGTACTTTTATGTATTCAAGTGCACCAACGCGTTTATA
CTTCTGGGCAGTACCAGCTGGTTTCCAATGAAGTAGTTGCACACTAACAC
GTACATCTTCCTTCTCCCTTCTTCGTTTTCTTGACAACCTTTCACTCAAT
TCTCTTGCTTCAGCATTTAATGCTTTTGGTTTTTTCcacattattttttc
caaattgttgcttttttacgtttttactAAAAAGAAATGTAGGGTGTCAT
CCGTGAAACTAAGTCCCATTAGAAATTTGGAGAAACCTTATCTGCAAAAC
ATGTATGAAACATGTATGATTCAGCAGTGAAAggcacaaaattgtgaaaa
tattatCTCCTAAAAGTGCcattcgcaaaattaagtcccaGCATACCTTA
AAACCTGCTTAAAACTTAGCGGATGAGATCAACCACTAAATTTAAAATCC
CCATGAAAATGTATCCTGTTTAAAAAGTAAGAGATTCGAGAAGATTAAGT
AGAACgtat Run BLAST on NCBI protein sequence of TCONS_00040501-protein >TCONS_00040501-protein ID=TCONS_00040501-protein|Name=TCONS_00040501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MWKKPKALNAEARELSERLSRKRRREKEDVRVSVQLLHWKPAGTAQKYKR
VGALEYIKVPQNASLADLKTACINHKTFKCQAEGKVCGILEGERGPPADE
ESLIDLKKTLHIRFIPNDEANSPEEEEEANIVEEEEKQSTTNQQTLNTFQ
APSIPPTPKTCEVPKSFSIAHYLQAGQCLSPKYEVKVLMLEEFDFNTNKW
NTPFATKFAVDLESFAKGGFREAFKARHIK Run BLAST on NCBI transcript from alignment at sc0002443:3683..4691 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040501 ID=TCONS_00040501|Name=TCONS_00040501|organism=Clytia hemisphaerica|type=transcript|length=1009bp|location=Sequence derived from alignment at sc0002443:3683..4691 (Clytia hemisphaerica)
atacGTTCTACTTAATCTTCTCGAATCTCTTACTTTTTAAACAGGATACA
TTTTCATGGGGATTTTAAATTTAGTGGTTGATCTCATCCGCTAAGTTTTA
AGCAGGTTTTAAGGTATGCtgggacttaattttgcgaatgGCACTTTTAG
GAGataatattttcacaattttgtgccTTTCACTGCTGAATCATACATGT
TTCATACATGTTTTGCAGATAAGGTTTCTCCAAATTTCTAATGGGACTTA
GTTTCACGGATGACACCCTACATTTCTTTTTagtaaaaacgtaaaaaagc
aacaatttggaaaaaataatgtgGAAAAAACCAAAAGCATTAAATGCTGA
AGCAAGAGAATTGAGTGAAAGGTTGTCAAGAAAACGAAGAAGGGAGAAGG
AAGATGTACGTGTTAGTGTGCAACTACTTCATTGGAAACCAGCTGGTACT
GCCCAGAAGTATAAACGCGTTGGTGCACTTGAATACATAAAAGTACCCCA
AAATGCATCTTTAGCAGATCTTAAGACTGCCTGTATCAATCATAAAACTT
TCAAATGTCAAGCAGAAGGCAAAGTTTGTGGTATTTTGGAGGGAGAGAGA
GGCCCACCTGCAGATGAAGAAAGCCTCATTGACCTGAAAAAGACACTTCA
CATTAGATTCATTCCTAATGATGAAGCAAATAGTCCAGAGGAGGAAGAAG
AAGCAAATATCGTAgaggaagaagaaaaacaatCAACAACCAATCAACAA
ACACTAAACACTTTTCAAGCTCCATCAATTCCCCCAACACCAAAAACATG
TGAGGTCCCCAAGTCTTTCTCGATAGCACATTATCTGCAAGCTGGTCAGT
GCCTTTCTCCTAAGTACGAGGTTAAAGTCCTCATGCTTGAAGAGTTTGAT
TTTAACACTAATAAATGGAATACTCCATTTGCAACAAAATTTGCAGTCGA
CTTGGAGTCCTTTGCTAAAGGTGGCTTTAGAGAGGCATTCAAGGCAAGAC
ATATCAAAG Coding sequence (CDS) from alignment at sc0002443:3683..4691 >TCONS_00040501 ID=TCONS_00040501|Name=TCONS_00040501|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0002443:3683..4691 (Clytia hemisphaerica)
atgtgGAAAAAACCAAAAGCATTAAATGCTGAAGCAAGAGAATTGAGTGA
AAGGTTGTCAAGAAAACGAAGAAGGGAGAAGGAAGATGTACGTGTTAGTG
TGCAACTACTTCATTGGAAACCAGCTGGTACTGCCCAGAAGTATAAACGC
GTTGGTGCACTTGAATACATAAAAGTACCCCAAAATGCATCTTTAGCAGA
TCTTAAGACTGCCTGTATCAATCATAAAACTTTCAAATGTCAAGCAGAAG
GCAAAGTTTGTGGTATTTTGGAGGGAGAGAGAGGCCCACCTGCAGATGAA
GAAAGCCTCATTGACCTGAAAAAGACACTTCACATTAGATTCATTCCTAA
TGATGAAGCAAATAGTCCAGAGGAGGAAGAAGAAGCAAATATCGTAgagg
aagaagaaaaacaatCAACAACCAATCAACAAACACTAAACACTTTTCAA
GCTCCATCAATTCCCCCAACACCAAAAACATGTGAGGTCCCCAAGTCTTT
CTCGATAGCACATTATCTGCAAGCTGGTCAGTGCCTTTCTCCTAAGTACG
AGGTTAAAGTCCTCATGCTTGAAGAGTTTGATTTTAACACTAATAAATGG
AATACTCCATTTGCAACAAAATTTGCAGTCGACTTGGAGTCCTTTGCTAA
AGGTGGCTTTAGAGAGGCATTCAAGGCAAGACATATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040501-exon-sc0002443-1491911889:3683..4691 | TCONS_00040501-exon-sc0002443-1491911889:3683..4691 | Clytia hemisphaerica | exon |
| TCONS_00040501-exon-sc0002443-1510915933:3683..4691 | TCONS_00040501-exon-sc0002443-1510915933:3683..4691 | Clytia hemisphaerica | exon |
| TCONS_00040501-exon-sc0002443-1575043694:3683..4691 | TCONS_00040501-exon-sc0002443-1575043694:3683..4691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002443 | supercontig | sc0002443:3683..4691 . |
Blast
The following BLAST results are available for this feature:
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