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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040480 ID=TCONS_00040480|Name=TCONS_00040480|organism=Clytia hemisphaerica|type=transcript|length=1679bp
CATAAACGAACGACAGTCAAAATCTGGCTGCTTGTATTCTGCTGTGCGAC
CACAACGGCTGTCAAGATCAAGGTTATGGATAGCTATAATACAACCTCAT
TTCTTCAAGCATTCACAAGACTTGCCTGTGATGTTGGATATCCCAAAAAG
CTTTTGGTAGATGAAGGAAGTCAATTGGTAAAGGGTTGTGAAACCATGCA
ACTCAACTTCATTGATCTTCAACAACACCTTCATTCGAAGATGAACATAG
AATTTGATACCTGTCCCGTTGGGGGACATAATGTCCATGGTCGTGTTGAA
AGGAAGATACTAGAAATCCGCAAATCAATCGAAAAATCATCAAGCAAAGA
ACGACTCTCTATTCTACATTGGGAGACACTAGCAGCAACAATCTCAAATT
CAATCAATAACCTCCCTCTGGCTGTTGGTAATTTCAAGGAATTTGAGCTG
TCAGATCTCATCACACCGAACCGATTGCTACTCGGGCGAAACAATGATCG
ATGTCCCACCGAACCATTGGCTGTTTCAAACGATTATGATAAAATTCTAC
GctcaaataaaaagatttttgatgCATGGTTTGAATGTTGGCTCACTGCA
CATGTGCCAAAGCTCACGAACCAGCCAAAATGGTTCAATAATGATATTGA
TCTCAAACCTGGCGACGTTGTCTTGTTTACAAAACATGAATCCAGCCTGG
CTTCAGTCTATCAGTATGGTATGGTCCGAGAAATCGAAGAAAGTCGCGAC
GGAAAAGTTCGAAAAGCTACCGTGGAATATCAAAATTCAAACGAGAAAAC
AAAACGAGAAACACATCGGTCAGTCAGGTCATTGGTATTGATTCGAGGAA
TAGATGAAATGGATTTGTCAACTCAGTTGTATGGCTTGAAGGATTAAAAT
CCTCATtatatatataataaaacaaaaacaaaaaaaattcaaatttttat
agaatttttcATTTGTCGGGGGAGTGTTAAGGCAGTTAACCTTAATTGAG
TGAGTCTCAAGTCCCATACAGCACTCTCACCAACTTGCAGTTTGTCATTT
TCgtgttttcctttgttttcatcatgtttgtttacctttttcagattact
cacatttcattttctaccattttgaatatatttcatattttcagttaAAT
TCACATTTGGTCAGTGTTTTGTATATTAATNatatatttcatattttcag
ttaAATTCACATTTGGTCAGTGTTTTGTCATAATTTATATtagtttttca
taaattattttctggtctgtattttatacaTTCTATTCTGCAGAATGTAT
AAAAAGTCACTTTCAGTTTTGCACTTCACTTCAACAGAGACATTCAAGGA
GTCAAGACATGTCAAGTCAATATTTTCAAGTTACTTAACAATTATTTCAT
TCTTACATACACTTGGTGTTAATCAACACACACCCTGTGTACTGCTGCCT
GCTTACAGCTTCTTATTTCAGGCTAGCTGGTgagtttttcctttcttttg
ccTTTGTTctaccagaggaatgtaaagagatggaaaaacagcttcttgaa
aacaatggaaaaacggctcgtcatataccaggtctcttgcctttaaggga
gtttatgtcgagtaaataggtttcttttgttgtcgctataaaaaatctgc
ataattagcgtgttgtgacaaaattcttt Run BLAST on NCBI protein sequence of TCONS_00040480-protein >TCONS_00040480-protein ID=TCONS_00040480-protein|Name=TCONS_00040480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
HKRTTVKIWLLVFCCATTTAVKIKVMDSYNTTSFLQAFTRLACDVGYPKK
LLVDEGSQLVKGCETMQLNFIDLQQHLHSKMNIEFDTCPVGGHNVHGRVE
RKILEIRKSIEKSSSKERLSILHWETLAATISNSINNLPLAVGNFKEFEL
SDLITPNRLLLGRNNDRCPTEPLAVSNDYDKILRSNKKIFDAWFECWLTA
HVPKLTNQPKWFNNDIDLKPGDVVLFTKHESSLASVYQYGMVREIEESRD
GKVRKATVEYQNSNEKTKRETHRSVRSLVLIRGIDEMDLSTQLYGLKD Run BLAST on NCBI transcript from alignment at sc0002440:2..1680 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040480 ID=TCONS_00040480|Name=TCONS_00040480|organism=Clytia hemisphaerica|type=transcript|length=1679bp|location=Sequence derived from alignment at sc0002440:2..1680 (Clytia hemisphaerica)
aaagaattttgtcacaacacgctaattatgcagattttttatagcgacaa
caaaagaaacctatttactcgacataaactcccttaaaggcaagagacct
ggtatatgacgagccgtttttccattgttttcaagaagctgtttttccat
ctctttacattcctctggtagAACAAAggcaaaagaaaggaaaaactcAC
CAGCTAGCCTGAAATAAGAAGCTGTAAGCAGGCAGCAGTACACAGGGTGT
GTGTTGATTAACACCAAGTGTATGTAAGAATGAAATAATTGTTAAGTAAC
TTGAAAATATTGACTTGACATGTCTTGACTCCTTGAATGTCTCTGTTGAA
GTGAAGTGCAAAACTGAAAGTGACTTTTTATACATTCTGCAGAATAGAAt
gtataaaatacagaccagaaaataatttatgaaaaactaATATAAATTAT
GACAAAACACTGACCAAATGTGAATTtaactgaaaatatgaaatatatNA
TTAATATACAAAACACTGACCAAATGTGAATTtaactgaaaatatgaaat
atattcaaaatggtagaaaatgaaatgtgagtaatctgaaaaaggtaaac
aaacatgatgaaaacaaaggaaaacacGAAAATGACAAACTGCAAGTTGG
TGAGAGTGCTGTATGGGACTTGAGACTCACTCAATTAAGGTTAACTGCCT
TAACACTCCCCCGACAAATgaaaaattctataaaaatttgaatttttttt
gtttttgttttattatatatataATGAGGATTTTAATCCTTCAAGCCATA
CAACTGAGTTGACAAATCCATTTCATCTATTCCTCGAATCAATACCAATG
ACCTGACTGACCGATGTGTTTCTCGTTTTGTTTTCTCGTTTGAATTTTGA
TATTCCACGGTAGCTTTTCGAACTTTTCCGTCGCGACTTTCTTCGATTTC
TCGGACCATACCATACTGATAGACTGAAGCCAGGCTGGATTCATGTTTTG
TAAACAAGACAACGTCGCCAGGTTTGAGATCAATATCATTATTGAACCAT
TTTGGCTGGTTCGTGAGCTTTGGCACATGTGCAGTGAGCCAACATTCAAA
CCATGcatcaaaaatctttttatttgagCGTAGAATTTTATCATAATCGT
TTGAAACAGCCAATGGTTCGGTGGGACATCGATCATTGTTTCGCCCGAGT
AGCAATCGGTTCGGTGTGATGAGATCTGACAGCTCAAATTCCTTGAAATT
ACCAACAGCCAGAGGGAGGTTATTGATTGAATTTGAGATTGTTGCTGCTA
GTGTCTCCCAATGTAGAATAGAGAGTCGTTCTTTGCTTGATGATTTTTCG
ATTGATTTGCGGATTTCTAGTATCTTCCTTTCAACACGACCATGGACATT
ATGTCCCCCAACGGGACAGGTATCAAATTCTATGTTCATCTTCGAATGAA
GGTGTTGTTGAAGATCAATGAAGTTGAGTTGCATGGTTTCACAACCCTTT
ACCAATTGACTTCCTTCATCTACCAAAAGCTTTTTGGGATATCCAACATC
ACAGGCAAGTCTTGTGAATGCTTGAAGAAATGAGGTTGTATTATAGCTAT
CCATAACCTTGATCTTGACAGCCGTTGTGGTCGCACAGCAGAATACAAGC
AGCCAGATTTTGACTGTCGTTCGTTTATG Coding sequence (CDS) from alignment at sc0002440:2..1680 >TCONS_00040480 ID=TCONS_00040480|Name=TCONS_00040480|organism=Clytia hemisphaerica|type=CDS|length=897bp|location=Sequence derived from alignment at sc0002440:2..1680 (Clytia hemisphaerica)
TTAATCCTTCAAGCCATACAACTGAGTTGACAAATCCATTTCATCTATTC
CTCGAATCAATACCAATGACCTGACTGACCGATGTGTTTCTCGTTTTGTT
TTCTCGTTTGAATTTTGATATTCCACGGTAGCTTTTCGAACTTTTCCGTC
GCGACTTTCTTCGATTTCTCGGACCATACCATACTGATAGACTGAAGCCA
GGCTGGATTCATGTTTTGTAAACAAGACAACGTCGCCAGGTTTGAGATCA
ATATCATTATTGAACCATTTTGGCTGGTTCGTGAGCTTTGGCACATGTGC
AGTGAGCCAACATTCAAACCATGcatcaaaaatctttttatttgagCGTA
GAATTTTATCATAATCGTTTGAAACAGCCAATGGTTCGGTGGGACATCGA
TCATTGTTTCGCCCGAGTAGCAATCGGTTCGGTGTGATGAGATCTGACAG
CTCAAATTCCTTGAAATTACCAACAGCCAGAGGGAGGTTATTGATTGAAT
TTGAGATTGTTGCTGCTAGTGTCTCCCAATGTAGAATAGAGAGTCGTTCT
TTGCTTGATGATTTTTCGATTGATTTGCGGATTTCTAGTATCTTCCTTTC
AACACGACCATGGACATTATGTCCCCCAACGGGACAGGTATCAAATTCTA
TGTTCATCTTCGAATGAAGGTGTTGTTGAAGATCAATGAAGTTGAGTTGC
ATGGTTTCACAACCCTTTACCAATTGACTTCCTTCATCTACCAAAAGCTT
TTTGGGATATCCAACATCACAGGCAAGTCTTGTGAATGCTTGAAGAAATG
AGGTTGTATTATAGCTATCCATAACCTTGATCTTGACAGCCGTTGTGGTC
GCACAGCAGAATACAAGCAGCCAGATTTTGACTGTCGTTCGTTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040480-exon-sc0002440-1491911889:2..1680 | TCONS_00040480-exon-sc0002440-1491911889:2..1680 | Clytia hemisphaerica | exon |
| TCONS_00040480-exon-sc0002440-1510915933:2..1680 | TCONS_00040480-exon-sc0002440-1510915933:2..1680 | Clytia hemisphaerica | exon |
| TCONS_00040480-exon-sc0002440-1575043694:2..1680 | TCONS_00040480-exon-sc0002440-1575043694:2..1680 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002440 | supercontig | sc0002440:2..1680 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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