TCONS_00040452 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040452
Unique NameTCONS_00040452
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040452 ID=TCONS_00040452|Name=TCONS_00040452|organism=Clytia hemisphaerica|type=transcript|length=295bp
TTTTTCTATCGACTTCTTTGTCaagaatgtaaatcaatctgctcaagcag
acaaggtttatatttttgccgTGTACGAAACATTGGAGCACTATACTAAA
AGATAACACTTCAACAATCCAAACAAGACATGACGTCGCcgttaaaacat
tcaaaaatatctCCAAGCCAAGATGCAATATGTTTATTAAATACACGCTC
ACAGTATCTCTAGTCAGGGAAAACAATCACACATTCAAAAGTGTCTTTAG
tcaggaaaacaaccaaaacaatcacacaaagtttcaaaagtttac
Run BLAST on NCBI

transcript from alignment at sc0002434:8520..8814

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040452 ID=TCONS_00040452|Name=TCONS_00040452|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at sc0002434:8520..8814 (Clytia hemisphaerica)
gtaaacttttgaaactttgtgtgattgttttggttgttttcctgaCTAAA
GACACTTTTGAATGTGTGATTGTTTTCCCTGACTAGAGATACTGTGAGCG
TGTATTTAATAAACATATTGCATCTTGGCTTGGagatatttttgaatgtt
ttaacgGCGACGTCATGTCTTGTTTGGATTGTTGAAGTGTTATCTTTTAG
TATAGTGCTCCAATGTTTCGTACAcggcaaaaatataaaccttgtctgct
tgagcagattgatttacattcttGACAAAGAAGTCGATAGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024597XLOC_024597Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040452-exon-sc0002434-1491911889:8520..8814TCONS_00040452-exon-sc0002434-1491911889:8520..8814Clytia hemisphaericaexon
TCONS_00040452-exon-sc0002434-1510915933:8520..8814TCONS_00040452-exon-sc0002434-1510915933:8520..8814Clytia hemisphaericaexon
TCONS_00040452-exon-sc0002434-1575043694:8520..8814TCONS_00040452-exon-sc0002434-1575043694:8520..8814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002434supercontigsc0002434:8520..8814 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.17851	1.94755	0	0	0	0.496451	0	0	1.98961	3.38559	0	2.77388	1.48562	0	2.51757	3.07718	4.17775	1.73651	0	5.63104	10.0777	4.95821	5.57894	6.94488	0.474323	0	14.5894	17.6195	14.4254	18.4378
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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