TCONS_00040449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040449
Unique NameTCONS_00040449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040449 ID=TCONS_00040449|Name=TCONS_00040449|organism=Clytia hemisphaerica|type=transcript|length=557bp
agttaTAAGCTACAACACTGGTTTATGGGGCAGTTGGCGTTCATGGGAGT
ATTGCCCAAAAGGAACCTGGGTTGTCAAGCTACAAACAAATATCGAAAGC
CACCAAGGAGATGGCGATGACACGGCATTAAATGCAATCTCTTTAAGATG
TAACGATGATGTTGGCGCTACCATCAAAAGTGGATCCACCAATTGGGGCA
CTTGGCAAGCCGAGTCACAAAAATGTATTAATGGATTTTACGGTGgaatg
ctaaaatttgaaagCTCCCAGgggTCTGATGATGACGATACTTCGACCAA
TGCCATTCGTTTGATATGTCGAGATGACAATCAGTGGTACAGAAGCGGTG
AAGGCGGTTGGGGTTCATGGACACAAAGCACTTACTGTCCTGCTGGCTAC
AAAATTGTTGGTCTTCAAACACAGATCGAAAGTGACCAAGGGAGTGACGA
CGATACTAGTTTGAATGGTGTTCGATTGTTGTGTCGATATTTTGGATAAG
GCAATGGCGTGATACAGATAATTGATAAAGGGGGTGTTTGTGCATTTTAA
CTAGTAC
Run BLAST on NCBI

protein sequence of TCONS_00040449-protein

>TCONS_00040449-protein ID=TCONS_00040449-protein|Name=TCONS_00040449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
VISYNTGLWGSWRSWEYCPKGTWVVKLQTNIESHQGDGDDTALNAISLRC
NDDVGATIKSGSTNWGTWQAESQKCINGFYGGMLKFESSQGSDDDDTSTN
AIRLICRDDNQWYRSGEGGWGSWTQSTYCPAGYKIVGLQTQIESDQGSDD
DTSLNGVRLLCRYFG
Run BLAST on NCBI

transcript from alignment at sc0002434:13302..14484+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040449 ID=TCONS_00040449|Name=TCONS_00040449|organism=Clytia hemisphaerica|type=transcript|length=1183bp|location=Sequence derived from alignment at sc0002434:13302..14484+ (Clytia hemisphaerica)
agttaTAAGCTACAACACTGGTTTATGGGGCAGTTGGCGTTCATGGGAGT
ATTGCCCAAAAGGAACCTGGGTTGTCAAGCTACAAACAAATATCGAAAGC
CACCAAGGAGGTATAGAAtctttcataaaaagttgtttccgAGAATTTCA
TGGCATGGTTTTTTAAAATCTCTTCAGTTCCTGCCAAGTATAATTTTCAT
CGTTCttgaaattaatcaaaatacaaaattatctCGGGTTATAAATTGGT
TCTCAGGGCAAATTTTCTTATGAAATGGGTTCTATGGTAAATACATGTGT
TTTATATCTTATCTTAGAGCAGTTACAACTCTAGATAGAGAGATAGGAAT
TTACTACTCACTATAGCTAGATACTGATAGTttttaataaagtttttctC
TTTGTTCAATGTATGTCTCTTTTTATCCCAGATGGCGATGACACGGCATT
AAATGCAATCTCTTTAAGATGTAACGATGATGTTGGCGCTACCATCAAAA
GTGGATCCACCAATTGGGGCACTTGGCAAGCCGAGTCACAAAAATGTATT
AATGGATTTTACGGTGgaatgctaaaatttgaaagCTCCCAGGTAATACA
CATTGGACTTCTGTAACTTATCATCTCCGAAGAATCAAAAtatcatttta
aggcttttaaatTTTCCAGCAGTCAATAATTTCGGTTTCTCAAGAACCAA
GAACTCAAATTTACCCCGGTTTAAAAGGTCTTCTTATTGAGTTGATAATT
TTACAGTTTAGATACCATTACACCTCCTTAATAAAGTTTGATTACATAGA
TCCTTCTACTCTtcttatcaaaatatttattccaacccctcccACGTGCT
AAAATTACCTTGTAAGAAATAAATCTTATtttataatgaattttcagggg
TCTGATGATGACGATACTTCGACCAATGCCATTCGTTTGATATGTCGAGA
TGACAATCAGTGGTACAGAAGCGGTGAAGGCGGTTGGGGTTCATGGACAC
AAAGCACTTACTGTCCTGCTGGCTACAAAATTGTTGGTCTTCAAACACAG
ATCGAAAGTGACCAAGGGAGTGACGACGATACTAGTTTGAATGGTGTTCG
ATTGTTGTGTCGATATTTTGGATAAGGCAATGGCGTGATACAGATAATTG
ATAAAGGGGGTGTTTGTGCATTTTAACTAGTAC

Coding sequence (CDS) from alignment at sc0002434:13302..14484+

>TCONS_00040449 ID=TCONS_00040449|Name=TCONS_00040449|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at sc0002434:13302..14484+ (Clytia hemisphaerica)
gttaTAAGCTACAACACTGGTTTATGGGGCAGTTGGCGTTCATGGGAGTA
TTGCCCAAAAGGAACCTGGGTTGTCAAGCTACAAACAAATATCGAAAGCC
ACCAAGGAGATGGCGATGACACGGCATTAAATGCAATCTCTTTAAGATGT
AACGATGATGTTGGCGCTACCATCAAAAGTGGATCCACCAATTGGGGCAC
TTGGCAAGCCGAGTCACAAAAATGTATTAATGGATTTTACGGTGgaatgc
taaaatttgaaagCTCCCAGgggTCTGATGATGACGATACTTCGACCAAT
GCCATTCGTTTGATATGTCGAGATGACAATCAGTGGTACAGAAGCGGTGA
AGGCGGTTGGGGTTCATGGACACAAAGCACTTACTGTCCTGCTGGCTACA
AAATTGTTGGTCTTCAAACACAGATCGAAAGTGACCAAGGGAGTGACGAC
GATACTAGTTTGAATGGTGTTCGATTGTTGTGTCGATATTTTGGATAAgt
taTAAGCTACAACACTGGTTTATGGGGCAGTTGGCGTTCATGGGAGTATT
GCCCAAAAGGAACCTGGGTTGTCAAGCTACAAACAAATATCGAAAGCCAC
CAAGGAGATGGCGATGACACGGCATTAAATGCAATCTCTTTAAGATGTAA
CGATGATGTTGGCGCTACCATCAAAAGTGGATCCACCAATTGGGGCACTT
GGCAAGCCGAGTCACAAAAATGTATTAATGGATTTTACGGTGgaatgcta
aaatttgaaagCTCCCAGgggTCTGATGATGACGATACTTCGACCAATGC
CATTCGTTTGATATGTCGAGATGACAATCAGTGGTACAGAAGCGGTGAAG
GCGGTTGGGGTTCATGGACACAAAGCACTTACTGTCCTGCTGGCTACAAA
ATTGTTGGTCTTCAAACACAGATCGAAAGTGACCAAGGGAGTGACGACGA
TACTAGTTTGAATGGTGTTCGATTGTTGTGTCGATATTTTGGATAAgtta
TAAGCTACAACACTGGTTTATGGGGCAGTTGGCGTTCATGGGAGTATTGC
CCAAAAGGAACCTGGGTTGTCAAGCTACAAACAAATATCGAAAGCCACCA
AGGAGATGGCGATGACACGGCATTAAATGCAATCTCTTTAAGATGTAACG
ATGATGTTGGCGCTACCATCAAAAGTGGATCCACCAATTGGGGCACTTGG
CAAGCCGAGTCACAAAAATGTATTAATGGATTTTACGGTGgaatgctaaa
atttgaaagCTCCCAGgggTCTGATGATGACGATACTTCGACCAATGCCA
TTCGTTTGATATGTCGAGATGACAATCAGTGGTACAGAAGCGGTGAAGGC
GGTTGGGGTTCATGGACACAAAGCACTTACTGTCCTGCTGGCTACAAAAT
TGTTGGTCTTCAAACACAGATCGAAAGTGACCAAGGGAGTGACGACGATA
CTAGTTTGAATGGTGTTCGATTGTTGTGTCGATATTTTGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024594XLOC_024594Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040449-proteinTCONS_00040449-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040449-exon-sc0002434-1491911889:13302..13411TCONS_00040449-exon-sc0002434-1491911889:13302..13411Clytia hemisphaericaexon
TCONS_00040449-exon-sc0002434-1510915933:13302..13411TCONS_00040449-exon-sc0002434-1510915933:13302..13411Clytia hemisphaericaexon
TCONS_00040449-exon-sc0002434-1575043694:13302..13411TCONS_00040449-exon-sc0002434-1575043694:13302..13411Clytia hemisphaericaexon
TCONS_00040449-exon-sc0002434-1491911889:13733..13893TCONS_00040449-exon-sc0002434-1491911889:13733..13893Clytia hemisphaericaexon
TCONS_00040449-exon-sc0002434-1510915933:13733..13893TCONS_00040449-exon-sc0002434-1510915933:13733..13893Clytia hemisphaericaexon
TCONS_00040449-exon-sc0002434-1575043694:13733..13893TCONS_00040449-exon-sc0002434-1575043694:13733..13893Clytia hemisphaericaexon
TCONS_00040449-exon-sc0002434-1491911889:14199..14484TCONS_00040449-exon-sc0002434-1491911889:14199..14484Clytia hemisphaericaexon
TCONS_00040449-exon-sc0002434-1510915933:14199..14484TCONS_00040449-exon-sc0002434-1510915933:14199..14484Clytia hemisphaericaexon
TCONS_00040449-exon-sc0002434-1575043694:14199..14484TCONS_00040449-exon-sc0002434-1575043694:14199..14484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002434supercontigsc0002434:13302..14484 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.701	28.7862	18.1276	17.8371	0.168277	0.169833	0.84401	0	2.6563	3.06409	2.2979	1.74122	2.98149	4.19553	9.36893	9.76546	2.39019	2.67065	3.83378	3.09424	0	0.359301	6.17115	4.59432	1.80187	2.97288	0	0.665742	1.58477	2.63875
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005515VOMI
Blast
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BLAST of TCONS_00040449 vs. Swiss-Prot (Human)
Match: VMO1 (Vitelline membrane outer layer protein 1 homolog OS=Homo sapiens GN=VMO1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.902e-16
Identity = 60/165 (36.36%), Postives = 81/165 (49.09%), Query Frame = 2 
Query:   20 GLWGSWRSWEYCPKGTWVVKLQTNIESHQG-DGDDTALNAISLRC--NDDVGAT--IKSGSTNWGTWQAESQKCINGFYGGMLKFEXXXXXXXX---XXXXNAIRLICRDDNQWYRSGE--GGWGSWTQSTYCPAGYKIVGLQTQIESDQGSDDDTSLNGVRLLC 484
            G WG W   E CP G +       +E  QG  GDDTALN I L C   + +G T  ++S S +WG W +E   C  G Y  ++ F     +      +T+ N +R  C D  +    G   G +G W  S +CP G    GLQT+I+  +G  DDT+LN  RL C
Sbjct:   42 GPWGDWAWPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWGEW-SEPLWCRGGAY--LVAFSLRVEAPTTLGDNTAANNVRFRCSDGEELQGPGLSWGDFGDW--SDHCPKG--ACGLQTKIQGPRGLGDDTALNDARLFC 199
The following BLAST results are available for this feature:
BLAST of TCONS_00040449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VMO13.902e-1636.36Vitelline membrane outer layer protein 1 homolog O... [more]
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