TCONS_00040449-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00040449-protein
Unique Name	TCONS_00040449-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	165

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00040449-protein ID=TCONS_00040449-protein|Name=TCONS_00040449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
VISYNTGLWGSWRSWEYCPKGTWVVKLQTNIESHQGDGDDTALNAISLRC
NDDVGATIKSGSTNWGTWQAESQKCINGFYGGMLKFESSQGSDDDDTSTN
AIRLICRDDNQWYRSGEGGWGSWTQSTYCPAGYKIVGLQTQIESDQGSDD
DTSLNGVRLLCRYFG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_024594	XLOC_024594	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00040449	TCONS_00040449	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005515	VOMI

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005515	Vitelline membrane outer layer protein I (VOMI)	GENE3D	2.100.10.20		coord: 1..163 e-value: 1.0E-40 score: 139.2
IPR005515	Vitelline membrane outer layer protein I (VOMI)	PFAM	PF03762	VOMI	coord: 4..161 e-value: 4.6E-36 score: 124.4
IPR005515	Vitelline membrane outer layer protein I (VOMI)	SUPERFAMILY	51092	Vitelline membrane outer protein-I (VMO-I)	coord: 3..161

Blast

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BLAST of TCONS_00040449-protein vs. Swiss-Prot (Human)
Match: VMO1 (Vitelline membrane outer layer protein 1 homolog OS=Homo sapiens GN=VMO1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.076e-19
Identity = 62/164 (37.80%), Postives = 83/164 (50.61%), Query Frame = 0

Query:    7 GLWGSWRSWEYCPKGTWVVKLQTNIESHQG-DGDDTALNAISLRC--NDDVGAT--IKSGSTNWGTWQAESQKCINGFY--GGMLKFESSQGSDDDDTSTNAIRLICRDDNQWYRSGE--GGWGSWTQSTYCPAGYKIVGLQTQIESDQGSDDDTSLNGVRLLC 161
            G WG W   E CP G +       +E  QG  GDDTALN I L C   + +G T  ++S S +WG W +E   C  G Y     L+ E+   +  D+T+ N +R  C D  +    G   G +G W  S +CP G    GLQT+I+  +G  DDT+LN  RL C
Sbjct:   42 GPWGDWAWPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWGEW-SEPLWCRGGAYLVAFSLRVEAPT-TLGDNTAANNVRFRCSDGEELQGPGLSWGDFGDW--SDHCPKG--ACGLQTKIQGPRGLGDDTALNDARLFC 199

The following BLAST results are available for this feature:

BLAST of TCONS_00040449-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00040449-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VMO1	5.076e-19	37.80	Vitelline membrane outer layer protein 1 homolog O...	[more]

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TCONS_00040449-protein (polypeptide) - C. hemisphaerica