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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040412 ID=TCONS_00040412|Name=TCONS_00040412|organism=Clytia hemisphaerica|type=transcript|length=1201bp
ATAGCAGGCTACAGATCAGCTATATCTGCGTTCCATGGTACAGTTGAGGG
ATGTAAAGTTGGTGATCATCCTCGGGTATCTTCGTTGCTCAAAGGGATGT
ACAACGAGAGACCGCCAATGCCAAAGTACGCTTTCATGTGGGATGTGGAT
AAGGTGTTAAATTATTTGGAGAAGTTGCCCGTGAAGGGTGATTTGAGTAA
TCTCACTCATAAGTTATCAATGCTGTTGGCCTTGACGTCAGCATCCAGGG
CATCCGAAATGCATCAGCTTGATTTACAGTTTGCGGTTAAGACGAACAAG
TTCCATAGGTTCACCCTGCCACAACCTACTAAGGTTCAGAAACCAGGGCA
TCCTCATCAAGAGGTGACCTTCTATGCTTTTGATGAGGTTCTGAGTTTAT
GTGTGTGTAAAACAATTGAGGAGTACTTAGAGATGACTAAAGCTATCAGG
GGGTCAGAGACAAAACTACTCATTGCCACAGTCAAACCGCACAAAGCAGT
GGCAGTTAGTACAATATCTAGGTGGCTCAAGACAGTCATAGGAGATGCAG
GTATCGATTCGAGTGTTTTTAAGGGTCATTCTACCAGGTCTGCATCTACA
TCAAAAGCGGTATTGAAGGGGGCATCCGTAGAGGATGTAATGAAGACAGC
TTATTGGTCGAACGAAAGTACGTTCCAGAAGTTCTATAACAAATCCTTTT
CGCTTCAGGGAAGTAAGTTCCAGGGAGCAATATATAAGAGCTTCAAACAA
AGGGAGTTGAAATTATGACCTTCAGTCATAATAAGAGTAGGGCGTACCCA
TATCAGATTGGGCGGAGATTTCAATGATATGAAATTGAGGATTGTGCAAG
GGCCCGAAGGGCCCGCAGTGCAATCCCGATTTTATGAATTGAAATCGAAG
CCAACGATCTGATATGCCCACCCTCTCCTCCCTAAATCTTAAAAGATGTA
ATATTCTcgatttattattttctttcagGTGGCCGTGGCCGTGGTGGACG
TGGTCGTGGCGGTTTTAATAGTTTTGGTTAACCTTGTATTTTATTTGTCA
CTAGTTTTTTGAGCCAGTTAACGGAGGTCCTGGCAAATATATTGTGTTCT
TATCAAGTTAAATATATattgtgttattttttgtttgtatccTAAGTTGA
AATTATGACCTTCATTCATAACTGCGAGTAGGGCGTACCCATATCAGATC
G Run BLAST on NCBI protein sequence of TCONS_00040412-protein >TCONS_00040412-protein ID=TCONS_00040412-protein|Name=TCONS_00040412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
IAGYRSAISAFHGTVEGCKVGDHPRVSSLLKGMYNERPPMPKYAFMWDVD
KVLNYLEKLPVKGDLSNLTHKLSMLLALTSASRASEMHQLDLQFAVKTNK
FHRFTLPQPTKVQKPGHPHQEVTFYAFDEVLSLCVCKTIEEYLEMTKAIR
GSETKLLIATVKPHKAVAVSTISRWLKTVIGDAGIDSSVFKGHSTRSAST
SKAVLKGASVEDVMKTAYWSNESTFQKFYNKSFSLQGSKFQGAIYKSFKQ
RELKL Run BLAST on NCBI transcript from alignment at sc0002419:7248..8448 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040412 ID=TCONS_00040412|Name=TCONS_00040412|organism=Clytia hemisphaerica|type=transcript|length=1201bp|location=Sequence derived from alignment at sc0002419:7248..8448 (Clytia hemisphaerica)
CGATCTGATATGGGTACGCCCTACTCGCAGTTATGAATGAAGGTCATAAT
TTCAACTTAggatacaaacaaaaaataacacaatATATATTTAACTTGAT
AAGAACACAATATATTTGCCAGGACCTCCGTTAACTGGCTCAAAAAACTA
GTGACAAATAAAATACAAGGTTAACCAAAACTATTAAAACCGCCACGACC
ACGTCCACCACGGCCACGGCCACctgaaagaaaataataaatcgAGAATA
TTACATCTTTTAAGATTTAGGGAGGAGAGGGTGGGCATATCAGATCGTTG
GCTTCGATTTCAATTCATAAAATCGGGATTGCACTGCGGGCCCTTCGGGC
CCTTGCACAATCCTCAATTTCATATCATTGAAATCTCCGCCCAATCTGAT
ATGGGTACGCCCTACTCTTATTATGACTGAAGGTCATAATTTCAACTCCC
TTTGTTTGAAGCTCTTATATATTGCTCCCTGGAACTTACTTCCCTGAAGC
GAAAAGGATTTGTTATAGAACTTCTGGAACGTACTTTCGTTCGACCAATA
AGCTGTCTTCATTACATCCTCTACGGATGCCCCCTTCAATACCGCTTTTG
ATGTAGATGCAGACCTGGTAGAATGACCCTTAAAAACACTCGAATCGATA
CCTGCATCTCCTATGACTGTCTTGAGCCACCTAGATATTGTACTAACTGC
CACTGCTTTGTGCGGTTTGACTGTGGCAATGAGTAGTTTTGTCTCTGACC
CCCTGATAGCTTTAGTCATCTCTAAGTACTCCTCAATTGTTTTACACACA
CATAAACTCAGAACCTCATCAAAAGCATAGAAGGTCACCTCTTGATGAGG
ATGCCCTGGTTTCTGAACCTTAGTAGGTTGTGGCAGGGTGAACCTATGGA
ACTTGTTCGTCTTAACCGCAAACTGTAAATCAAGCTGATGCATTTCGGAT
GCCCTGGATGCTGACGTCAAGGCCAACAGCATTGATAACTTATGAGTGAG
ATTACTCAAATCACCCTTCACGGGCAACTTCTCCAAATAATTTAACACCT
TATCCACATCCCACATGAAAGCGTACTTTGGCATTGGCGGTCTCTCGTTG
TACATCCCTTTGAGCAACGAAGATACCCGAGGATGATCACCAACTTTACA
TCCCTCAACTGTACCATGGAACGCAGATATAGCTGATCTGTAGCCTGCTA
T Coding sequence (CDS) from alignment at sc0002419:7248..8448 >TCONS_00040412 ID=TCONS_00040412|Name=TCONS_00040412|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0002419:7248..8448 (Clytia hemisphaerica)
TCATAATTTCAACTCCCTTTGTTTGAAGCTCTTATATATTGCTCCCTGGA
ACTTACTTCCCTGAAGCGAAAAGGATTTGTTATAGAACTTCTGGAACGTA
CTTTCGTTCGACCAATAAGCTGTCTTCATTACATCCTCTACGGATGCCCC
CTTCAATACCGCTTTTGATGTAGATGCAGACCTGGTAGAATGACCCTTAA
AAACACTCGAATCGATACCTGCATCTCCTATGACTGTCTTGAGCCACCTA
GATATTGTACTAACTGCCACTGCTTTGTGCGGTTTGACTGTGGCAATGAG
TAGTTTTGTCTCTGACCCCCTGATAGCTTTAGTCATCTCTAAGTACTCCT
CAATTGTTTTACACACACATAAACTCAGAACCTCATCAAAAGCATAGAAG
GTCACCTCTTGATGAGGATGCCCTGGTTTCTGAACCTTAGTAGGTTGTGG
CAGGGTGAACCTATGGAACTTGTTCGTCTTAACCGCAAACTGTAAATCAA
GCTGATGCATTTCGGATGCCCTGGATGCTGACGTCAAGGCCAACAGCATT
GATAACTTATGAGTGAGATTACTCAAATCACCCTTCACGGGCAACTTCTC
CAAATAATTTAACACCTTATCCACATCCCACATGAAAGCGTACTTTGGCA
TTGGCGGTCTCTCGTTGTACATCCCTTTGAGCAACGAAGATACCCGAGGA
TGATCACCAACTTTACATCCCTCAACTGTACCATGGAACGCAGATATAGC
TGATCTGTAGCCTGCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040412-exon-sc0002419-1491911889:7248..8448 | TCONS_00040412-exon-sc0002419-1491911889:7248..8448 | Clytia hemisphaerica | exon |
| TCONS_00040412-exon-sc0002419-1510915933:7248..8448 | TCONS_00040412-exon-sc0002419-1510915933:7248..8448 | Clytia hemisphaerica | exon |
| TCONS_00040412-exon-sc0002419-1575043694:7248..8448 | TCONS_00040412-exon-sc0002419-1575043694:7248..8448 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002419 | supercontig | sc0002419:7248..8448 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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